Ggra8793.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8793.t1
Unique NameGgra8793.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length202
Homology
BLAST of Ggra8793.t1 vs. uniprot
Match: A0A2V3IUH1 (Polyketide_cyc domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUH1_9FLOR)

HSP 1 Score: 241 bits (615), Expect = 3.610e-78
Identity = 118/193 (61.14%), Postives = 151/193 (78.24%), Query Frame = 0
Query:    6 NVAFTTTAVFIPRRNAFPSTPLTHSKAPRTFTTPRAEMVRVSVPLKIEAPHLYCFELFADLSNMPEWSAALEAVERDAEDPSFSEWKFAWNGVRLSWRAKDVENVQNQVSDIPSIRWRSVTGLVHTGEVQFEDL-QPNGTNLVMTVDYDIESLLASIMRSSLVSSFVEGAIESDLSKFRRYALRKYRKARMSS 197
            N AF  ++ F+P+   F S  +T ++A   F+ P  +MVRVSVPLKIEAP+ YC+ LFADLSNMPEWS+ LEAVERDA+DP FS+WKF+WNG+RL WRAKDV N +    D P + W+SV+GLVHTG VQF  L Q   T +++TV YDI++LLA+IM+SSLVS+FV+ AIE+DLSKFR YALRKYR+A++SS
Sbjct:    6 NAAFAFSSPFLPKATPFSSAHVTSTRAAPKFSAPTMQMVRVSVPLKIEAPNQYCYSLFADLSNMPEWSSTLEAVERDAQDPLFSDWKFSWNGIRLKWRAKDVLNDEQNHDDAPEVCWKSVSGLVHTGVVQFHPLEQDKSTTMILTVHYDIDNLLATIMQSSLVSNFVQSAIENDLSKFRSYALRKYRRAKISS 198          
BLAST of Ggra8793.t1 vs. uniprot
Match: uncharacterized 17.2 kDa protein in melC2-rnhH intergenic region-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E07DE (uncharacterized 17.2 kDa protein in melC2-rnhH intergenic region-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E07DE)

HSP 1 Score: 159 bits (402), Expect = 8.940e-46
Identity = 82/171 (47.95%), Postives = 107/171 (62.57%), Query Frame = 0
Query:   29 HSKAPRTFTTPRA---EMVRVSVPLKIEAPHLYCFELFADLSNMPEWSAALEAVERDAEDPSFSEWKFAWNGVRLSWRAKDVENVQNQVSDIPSIRWRSVTGLVHTGEVQFEDLQPNGTNLVMTVDYDIESLLASIMRSSLVSSFVEGAIESDLSKFRRYALRKYRKARMS 196
            +SK  R  +TP     + V+V VP+ +E P    F LFADL +M +WS+ L  V RDA D + S W F WNGVRLSW A+D + ++     +  I W SV GL H G V F +L P  T L MTVDYD+ SLLA IM +  + +FVE AI++DL KFR YALR  R+A+M+
Sbjct:   38 YSKERRPCSTPGTATMKFVQVRVPVPVEVPREMAFGLFADLDSMSQWSSTLAKVSRDAHDHTLSHWNFEWNGVRLSWSARDKDRIE-----LERISWESVDGLTHKGRVDFVELGPTATELTMTVDYDVASLLAVIMETRFIQNFVESAIKADLEKFRTYALRMQRRAKMN 203          
BLAST of Ggra8793.t1 vs. uniprot
Match: A0A5J4Z3L0 (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3L0_PORPP)

HSP 1 Score: 110 bits (275), Expect = 8.300e-27
Identity = 62/176 (35.23%), Postives = 95/176 (53.98%), Query Frame = 0
Query:   31 KAPRTFTTPRAEMVRVSVPLKIE-APHLYCFELFADLSNMPEWSAALEAVERDAEDPSFSEWKFAWNGVRLSWRAKDVENVQNQVSDIPSIRWRSVTGLVHTGEVQFEDL-------QPNGTNLVMTVDYDIESLLASIMRSSLVSSFVEGAIESDLSKFRRYALRKYRKARMSSE 198
            + P   + PR       V   +E  P  + +  F++ SNMPEWS+A++ V+RDA +P  + W+     + L W A D E +  ++     I W+S+TGL H G V F            +GT ++M VDYD++S LAS+ RS  VS+ +E A  ++L  FR+Y L  +RK RM  +
Sbjct:   29 RRPLRHSAPRMTWNAFEVQTFVENVPSDFAYARFSNFSNMPEWSSAVKRVKRDAAEPRKTSWEARVQSIPLQWEAMDEEVIVGKL-----ISWKSLTGLTHRGRVSFHHNGDKGSRGDGSGTMIIMRVDYDVQSFLASMARSRFVSNIIEQACAAELKNFRQYCLLAHRKERMQKK 199          
The following BLAST results are available for this feature:
BLAST of Ggra8793.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IUH13.610e-7861.14Polyketide_cyc domain-containing protein n=1 Tax=G... [more]
uncharacterized 17.2 kDa protein in melC2-rnhH intergenic region-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E07DE8.940e-4647.95uncharacterized 17.2 kDa protein in melC2-rnhH int... [more]
A0A5J4Z3L08.300e-2735.23Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019587Polyketide cyclase/dehydrasePFAMPF10604Polyketide_cyc2coord: 43..185
e-value: 3.4E-9
score: 37.1
IPR023393START-like domain superfamilyGENE3D3.30.530.20coord: 43..190
e-value: 8.5E-25
score: 89.2
NoneNo IPR availablePANTHERPTHR33824POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORT SUPERFAMILY PROTEINcoord: 30..192
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..201
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availableSUPERFAMILY55961Bet v1-likecoord: 43..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:138917..139522 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8793.t1Ggra8793.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 138917..139522 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8793.t1 ID=Ggra8793.t1|Name=Ggra8793.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=202bp
MPSKTNVAFTTTAVFIPRRNAFPSTPLTHSKAPRTFTTPRAEMVRVSVPL
KIEAPHLYCFELFADLSNMPEWSAALEAVERDAEDPSFSEWKFAWNGVRL
SWRAKDVENVQNQVSDIPSIRWRSVTGLVHTGEVQFEDLQPNGTNLVMTV
DYDIESLLASIMRSSLVSSFVEGAIESDLSKFRRYALRKYRKARMSSELS
F*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019587Polyketide_cyclase/dehydratase
IPR023393START-like_dom_sf