Ggra8793.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8793.t1
Unique NameGgra8793.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:138917..139522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703046.1
PFAMsPolyketide_cyc
Max annot lvl2759|Eukaryota
Evalue2.3e-24
EggNOG OGsCOG5637@1|root,2QSDH@2759|Eukaryota
DescriptionPolyketide cyclase / dehydrase and lipid transport
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8793Ggra8793Gracilaria gracilis GNS1m malegenetig00000860_pilon 138917..139522 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8793.t1.stop1Ggra8793.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 138917..138919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8793.t1.CDS1Ggra8793.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 138917..139522 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8793.t1.exon1Ggra8793.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 138917..139522 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8793.t1.start1Ggra8793.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 139520..139522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8793.t1Ggra8793.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 138917..139522 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8793.t1 ID=Ggra8793.t1|Name=Ggra8793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=202bp
MPSKTNVAFTTTAVFIPRRNAFPSTPLTHSKAPRTFTTPRAEMVRVSVPL
KIEAPHLYCFELFADLSNMPEWSAALEAVERDAEDPSFSEWKFAWNGVRL
SWRAKDVENVQNQVSDIPSIRWRSVTGLVHTGEVQFEDLQPNGTNLVMTV
DYDIESLLASIMRSSLVSSFVEGAIESDLSKFRRYALRKYRKARMSSELS
F*
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spliced messenger RNA

>Ggra8793.t1 ID=Ggra8793.t1|Name=Ggra8793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000860_pilon:138917..139522- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGCAAAACCAATGTAGCCTTCACCACCACTGCCGTCTTTATCCC
GCGGCGCAATGCATTCCCATCAACCCCTCTCACCCACTCTAAAGCGCCGC
GTACTTTCACTACACCAAGAGCAGAGATGGTGCGTGTCAGCGTGCCGCTC
AAGATTGAAGCCCCCCATCTCTACTGCTTTGAGCTGTTCGCCGACTTGTC
CAACATGCCTGAGTGGTCCGCAGCGCTAGAGGCCGTCGAAAGAGACGCAG
AAGACCCTTCCTTCTCAGAGTGGAAGTTCGCGTGGAACGGCGTGCGTCTA
AGTTGGCGAGCAAAGGATGTGGAGAATGTTCAAAATCAGGTCAGTGATAT
CCCTTCAATTCGCTGGAGAAGTGTGACAGGTCTCGTTCATACTGGCGAGG
TACAGTTTGAAGATTTACAACCCAACGGCACAAATCTTGTTATGACTGTA
GATTATGACATCGAAAGTCTCTTGGCATCAATTATGCGCTCTTCTTTGGT
TTCCAGCTTTGTTGAAGGAGCCATTGAGAGCGACTTGTCCAAGTTCCGAC
GTTATGCGCTGCGCAAGTACCGCAAGGCAAGAATGTCCAGCGAATTGTCA
TTCTAG
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protein sequence of Ggra8793.t1

>Ggra8793.t1 ID=Ggra8793.t1|Name=Ggra8793.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=202bp
MPSKTNVAFTTTAVFIPRRNAFPSTPLTHSKAPRTFTTPRAEMVRVSVPL
KIEAPHLYCFELFADLSNMPEWSAALEAVERDAEDPSFSEWKFAWNGVRL
SWRAKDVENVQNQVSDIPSIRWRSVTGLVHTGEVQFEDLQPNGTNLVMTV
DYDIESLLASIMRSSLVSSFVEGAIESDLSKFRRYALRKYRKARMSSELS
F*
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mRNA from alignment at tig00000860_pilon:138917..139522-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8793.t1 ID=Ggra8793.t1|Name=Ggra8793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000860_pilon:138917..139522- (Gracilaria gracilis GNS1m male)
ATGCCCAGCAAAACCAATGTAGCCTTCACCACCACTGCCGTCTTTATCCC
GCGGCGCAATGCATTCCCATCAACCCCTCTCACCCACTCTAAAGCGCCGC
GTACTTTCACTACACCAAGAGCAGAGATGGTGCGTGTCAGCGTGCCGCTC
AAGATTGAAGCCCCCCATCTCTACTGCTTTGAGCTGTTCGCCGACTTGTC
CAACATGCCTGAGTGGTCCGCAGCGCTAGAGGCCGTCGAAAGAGACGCAG
AAGACCCTTCCTTCTCAGAGTGGAAGTTCGCGTGGAACGGCGTGCGTCTA
AGTTGGCGAGCAAAGGATGTGGAGAATGTTCAAAATCAGGTCAGTGATAT
CCCTTCAATTCGCTGGAGAAGTGTGACAGGTCTCGTTCATACTGGCGAGG
TACAGTTTGAAGATTTACAACCCAACGGCACAAATCTTGTTATGACTGTA
GATTATGACATCGAAAGTCTCTTGGCATCAATTATGCGCTCTTCTTTGGT
TTCCAGCTTTGTTGAAGGAGCCATTGAGAGCGACTTGTCCAAGTTCCGAC
GTTATGCGCTGCGCAAGTACCGCAAGGCAAGAATGTCCAGCGAATTGTCA
TTCTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:138917..139522-

>Ggra8793.t1 ID=Ggra8793.t1|Name=Ggra8793.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000860_pilon:138917..139522- (Gracilaria gracilis GNS1m male)
ATGCCCAGCAAAACCAATGTAGCCTTCACCACCACTGCCGTCTTTATCCC
GCGGCGCAATGCATTCCCATCAACCCCTCTCACCCACTCTAAAGCGCCGC
GTACTTTCACTACACCAAGAGCAGAGATGGTGCGTGTCAGCGTGCCGCTC
AAGATTGAAGCCCCCCATCTCTACTGCTTTGAGCTGTTCGCCGACTTGTC
CAACATGCCTGAGTGGTCCGCAGCGCTAGAGGCCGTCGAAAGAGACGCAG
AAGACCCTTCCTTCTCAGAGTGGAAGTTCGCGTGGAACGGCGTGCGTCTA
AGTTGGCGAGCAAAGGATGTGGAGAATGTTCAAAATCAGGTCAGTGATAT
CCCTTCAATTCGCTGGAGAAGTGTGACAGGTCTCGTTCATACTGGCGAGG
TACAGTTTGAAGATTTACAACCCAACGGCACAAATCTTGTTATGACTGTA
GATTATGACATCGAAAGTCTCTTGGCATCAATTATGCGCTCTTCTTTGGT
TTCCAGCTTTGTTGAAGGAGCCATTGAGAGCGACTTGTCCAAGTTCCGAC
GTTATGCGCTGCGCAAGTACCGCAAGGCAAGAATGTCCAGCGAATTGTCA
TTCTAG
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