Ggra8788.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8788.t1
Unique NameGgra8788.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length379
Homology
BLAST of Ggra8788.t1 vs. uniprot
Match: A0A2V3IUI5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUI5_9FLOR)

HSP 1 Score: 432 bits (1111), Expect = 2.890e-148
Identity = 259/361 (71.75%), Postives = 300/361 (83.10%), Query Frame = 0
Query:   18 VTCLLCSFVAAEASESQPKSDVQTFISSLVADSQTVFYFELFVASLVVAYVLGFLYGSYVNLNLARKVARNLHESLDQQFAKFGAVDGKTLLKDGQSFYWYHATGRRYTSGLTVFMDLAKRMDLFSYTSSFMTSPQRDRIVFYLPITRDVSMDPLTLFIVKRKELSRLKEVQEGEALESVERYAGEVMDVNGLPGDLITMTEHSDIITALVPERIRTVIARQSKNLVSIHVTDSGAKWDSQCRDYTRLIRIEFVLPWKSKQLPQVLEDMSRIGIHLVDTVAETKISAAARKRAVELRRKVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMSREKQIKYEEKKRKKELNARMRKVVRK 378
            +  LL +  AAE +ES        FIS+LVAD QTV +FELFVASLVV YV+ FLYGS+ NLNLAR VA NL   L+ QF  FG  +GKTLLKDGQS++WYHATGRR TSGLTVF+DLAKRMD+FSYTS  MTSP+RDR+VFYLPIT DVSMDPLTLFIVKRKEL RL+ V+EG ALESVER+AG+V+DVNG P DL+TMTEHSDI TAL+PERIR +IARQ++NL+SIHVT++GAKWD+QC    RL+R+EFVLP +   LP VLEDM +I IH VD VA+TK+SA ARK+A+ELRR+ Q  XXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMS +KQ+KYE KKRKKELNARM+K  RK
Sbjct:    5 ILALLSTTAAAERTES--------FISALVADKQTVLFFELFVASLVVIYVICFLYGSHQNLNLARAVAHNLRNILEYQFVSFGTEEGKTLLKDGQSYFWYHATGRRNTSGLTVFLDLAKRMDIFSYTSGLMTSPERDRVVFYLPITNDVSMDPLTLFIVKRKELDRLRNVEEGLALESVERFAGQVIDVNGFPSDLVTMTEHSDISTALLPERIRNMIARQARNLISIHVTENGAKWDAQCSVSKRLVRVEFVLPRQKSNLPDVLEDMCQIAIHFVDAVADTKMSATARKKALELRRRAQLEXXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMSGDKQVKYEAKKRKKELNARMKKSARK 357          
BLAST of Ggra8788.t1 vs. uniprot
Match: R7QHT1 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHT1_CHOCR)

HSP 1 Score: 319 bits (817), Expect = 1.910e-103
Identity = 195/365 (53.42%), Postives = 257/365 (70.41%), Query Frame = 0
Query:   15 LVRVTC-LLCSFVAAEASESQPKSDVQTFISSLVADSQTVFYFELFVASLVVAYVLGFLYGSYVNLNLARKVARNLHESLDQQFAKFGAVDGKTLLKDGQSFYWYHATGRRYTSGLTVFMDLAKRMDLFSYTSSFMTSPQRDRIVFYLPITRDVSMDPLTLFIVKRKELSRLKEVQEGEALESVERYAGEVMDVNGLPGDLITMTEHSDIITALVPERIRTVIARQSKNLVSIHVTDSGAKWDSQCRDYTRLIRIEFVLPWKSKQLPQVLEDMSRIGIHLVDTVAETKISAAARKRAVELRRKVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGKMSREKQIKYEEKKRKKELNARMRKVVRK 378
            LV   C +LC  V A+A+  +P S      S L+AD  T+  FE+ +A+LVVA+ + F+YGS  N +LARKVA+ + + L  +FA  G    + LLKDG+S+YWY+ATGRRYTSGLTVFMDLAKRMD+F+YTS   ++PQ+DRIVFYLP+T D  M+P++L +V++KEL RL+E++EG  L   E  A  V+++NG+P D + MTEHSD+ TAL+PERIRT+I    K + SIHV ++GA WDSQC    RLIR++F LP KS  LP VL+ M +I +HLVD   E +++  ++K+A+ELR+K           XXXXXXXXXXXXXXXXXXX         Q+KYEEKKRKKE+NARMRK  RK
Sbjct:   17 LVASACVILCVQVQAQAAGGKPASKRSE--SPLIADENTMQLFEMAMAALVVAFAITFMYGSITNRSLARKVAKLMEDLLTLEFAHSGVSSTEKLLKDGESYYWYYATGRRYTSGLTVFMDLAKRMDVFAYTSGLFSTPQKDRIVFYLPLTDDFDMEPMSLLLVRKKELFRLRELKEGAPLREAETVAANVLELNGIPVDFVCMTEHSDVATALLPERIRTLIQENGKYINSIHVAENGASWDSQCTLTKRLIRVDFSLPGKSSLLPAVLQAMLQISMHLVDAAGEVRLTPVSKKKAIELRKKAVQEAERHIQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKYEEKKRKKEINARMRKATRK 379          
BLAST of Ggra8788.t1 vs. uniprot
Match: A0A3P7VQQ7 (Uncharacterized protein n=1 Tax=Brugia timori TaxID=42155 RepID=A0A3P7VQQ7_9BILA)

HSP 1 Score: 68.6 bits (166), Expect = 3.170e-9
Identity = 62/269 (23.05%), Postives = 123/269 (45.72%), Query Frame = 0
Query:   60 VASLVVAYVLGFLYGSYVNLNLARKVARNLHESLDQQFAKFGAVDGKTLLKDGQ------SFYWYHATGRRYTSGLTVFMDLAKRMDLFSYTSSFMTSPQRDRIVFYLPITRDVSMDPLTLFIVKRKELSRLKEVQEGEALESVERYAGEVMDVNGLPGDLITMTEHSDIITALVPERIRTVIARQSKNLVSIHVTD--SGAKWDSQCRDYTRLIRIEFVLPWKSKQLPQVLE--DMSRIGIHLVDTVAETKISAAARKRAVELRRKVQ 318
            V S++V Y+L +++G   N N+A K   +    L++QF   G       L++G       S Y    +GR    G+ + + L KR DL     + +  P+ D+++  + +  +  MD     I +RK +++  + +   +L ++ER     +D  GLP  ++   E  + + A++   + ++  +    +   H +D  SG K  S    +TRL     VL +  K    ++E   + R+  H  + +   ++S   + +A + R+ VQ
Sbjct:    2 VLSVLVLYMLNYIFGRARNRNIANKWFMDATSLLEEQFTLVGDDGTSENLREGHMHKETDSIYTIWCSGRVGCQGMLITLKLVKRQDLIHVVMN-LIRPKEDKVIIRIDVDNN-EMDSFVFAIGQRKLVTKASKEKMDLSLFTIERKG---VDRLGLPSSIVVYAEMFEAVNAIIDPAVLSMFRKYENAIDYFHFSDQYSGYK-PSDGESFTRLPETSRVLFFAFKMSSDIVEIDALLRMVFHCFEKIRRYRLSREGKLKADKKRQSVQ 264          
BLAST of Ggra8788.t1 vs. uniprot
Match: A0A5J4Z548 (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z548_PORPP)

HSP 1 Score: 61.6 bits (148), Expect = 8.720e-7
Identity = 95/337 (28.19%), Postives = 151/337 (44.81%), Query Frame = 0
Query:   57 ELFVASLVVAYVLGFLYGSYVNLNLARKVARNLHESLDQQ-FAKFGA----VDGKTLLKDGQSFYWYHATGRRYT-SGLTVFMDLAKRMDLFSYTSSFMTSPQRDRIVFYLPITRDVSMDPLTLFIVKRKELSRLKEVQEGEALESVERYAGEVMDVNGLPGDL----------ITMTEHSDIITALVPERIRTVIARQSKNLVSIHVTDSG-AKWDSQCRDYTRLIRIEFVL-PWKSKQLPQVLEDMSRIGIHLVDTVAE--TKISAAARKRAVELRRKVQXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AVGKMSREKQIKYEEKKRKKELNAR 371
            E+   +L + Y L F  G  VN  L R +A     +L    FA  G        + L ++  +  + +A+GR+   +GLT+ ++   R DLF    S M   + D++ F +P+  D  + PL L I + +EL   +          ++ Y     D   LPG L          +  ++  D       ER+ +++    + LV +H+TD G    + Q     +L+ +E  L P     + +++     + + L D + +  +  SA   +RA  LRRKV+                   XXXXXXXXX   V KMSR++QIKYE+KKRK EL  R
Sbjct:   83 EIAAFALALIYALVFAAGRTVNEMLLRSIAAASKAALTAAGFAHVGVHAPGTPEQILFQNSSNEAYAYASGRKNCPTGLTLRVNCRPRHDLFGILKSLMFHSEDDKLRFVMPL--DPKLSPLVLLICRNEELMLYRSHHP-----DIDIYC----DKQPLPGALARTLPNDAEFVFASDSPDAANLFQSERLVSLLLSMKQFLVCLHLTDQGDGGAEPQVLGEKKLVFLECDLHPINKTPVGEIMARSVELLVTLSDGIPKWSSSRSAVGLERARMLRRKVEEVETKEKVKTRDSQAEKDEXXXXXXXXXDERVAKMSRDEQIKYEDKKRKAELRKR 408          
The following BLAST results are available for this feature:
BLAST of Ggra8788.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IUI52.890e-14871.75Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QHT11.910e-10353.42Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A3P7VQQ73.170e-923.05Uncharacterized protein n=1 Tax=Brugia timori TaxI... [more]
A0A5J4Z5488.720e-728.19Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 303..347
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..367
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..378
NoneNo IPR availablePANTHERPTHR12883:SF0COILED-COIL DOMAIN-CONTAINING PROTEIN 47coord: 51..375
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..74
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..53
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 75..378
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..25
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 13..30
IPR012879PAT complex subunit CCDC47PFAMPF07946DUF1682coord: 54..368
e-value: 2.3E-55
score: 188.0
IPR012879PAT complex subunit CCDC47PANTHERPTHR12883ADIPOCYTE-SPECIFIC PROTEIN 4-RELATEDcoord: 51..375

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:119193..120329 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8788.t1Ggra8788.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 119193..120329 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8788.t1 ID=Ggra8788.t1|Name=Ggra8788.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=379bp
MRHPTKDALQYWLALVRVTCLLCSFVAAEASESQPKSDVQTFISSLVADS
QTVFYFELFVASLVVAYVLGFLYGSYVNLNLARKVARNLHESLDQQFAKF
GAVDGKTLLKDGQSFYWYHATGRRYTSGLTVFMDLAKRMDLFSYTSSFMT
SPQRDRIVFYLPITRDVSMDPLTLFIVKRKELSRLKEVQEGEALESVERY
AGEVMDVNGLPGDLITMTEHSDIITALVPERIRTVIARQSKNLVSIHVTD
SGAKWDSQCRDYTRLIRIEFVLPWKSKQLPQVLEDMSRIGIHLVDTVAET
KISAAARKRAVELRRKVQQEKEKKLQKVRAEEAAARRQAKKREEEEAVGK
MSREKQIKYEEKKRKKELNARMRKVVRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012879CCDC47