Ggra8788.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8788.t1
Unique NameGgra8788.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:119193..120329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0267129
PFAMsDUF1682
Max annot lvl554915|Amoebozoa
Evalue1.04e-14
EggNOG OGsKOG2357@1|root,KOG2357@2759|Eukaryota,3X9GC@554915|Amoebozoa
DescriptionProtein of unknown function (DUF1682)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8788Ggra8788Gracilaria gracilis GNS1m malegenetig00000860_pilon 119193..120329 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8788.t1.stop1Ggra8788.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 119193..119195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8788.t1.CDS1Ggra8788.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 119193..120329 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8788.t1.exon1Ggra8788.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 119193..120329 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8788.t1.start1Ggra8788.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 120327..120329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8788.t1Ggra8788.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 119193..120329 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8788.t1 ID=Ggra8788.t1|Name=Ggra8788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=379bp
MRHPTKDALQYWLALVRVTCLLCSFVAAEASESQPKSDVQTFISSLVADS
QTVFYFELFVASLVVAYVLGFLYGSYVNLNLARKVARNLHESLDQQFAKF
GAVDGKTLLKDGQSFYWYHATGRRYTSGLTVFMDLAKRMDLFSYTSSFMT
SPQRDRIVFYLPITRDVSMDPLTLFIVKRKELSRLKEVQEGEALESVERY
AGEVMDVNGLPGDLITMTEHSDIITALVPERIRTVIARQSKNLVSIHVTD
SGAKWDSQCRDYTRLIRIEFVLPWKSKQLPQVLEDMSRIGIHLVDTVAET
KISAAARKRAVELRRKVQQEKEKKLQKVRAEEAAARRQAKKREEEEAVGK
MSREKQIKYEEKKRKKELNARMRKVVRK*
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spliced messenger RNA

>Ggra8788.t1 ID=Ggra8788.t1|Name=Ggra8788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000860_pilon:119193..120329- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCACCCCACTAAGGATGCTCTCCAGTACTGGCTAGCGCTAGTGCG
AGTGACCTGTTTGCTGTGTTCGTTCGTTGCTGCCGAAGCATCCGAGTCTC
AGCCGAAGTCCGATGTGCAGACGTTCATATCTTCCTTGGTTGCAGACTCT
CAGACAGTCTTTTACTTCGAGCTTTTCGTAGCCTCTCTTGTCGTCGCTTA
CGTACTTGGTTTCTTGTATGGAAGCTACGTGAACTTGAATCTGGCACGCA
AGGTGGCGCGCAACCTGCATGAGAGTCTGGATCAACAGTTTGCTAAGTTT
GGAGCAGTAGATGGTAAGACGCTTCTCAAAGATGGGCAGTCGTTTTACTG
GTACCATGCTACGGGTCGACGATATACATCCGGCCTTACCGTGTTTATGG
ATTTGGCAAAGCGTATGGATTTATTCTCGTATACATCCAGCTTCATGACA
TCGCCACAGCGAGACCGCATTGTTTTTTACTTGCCTATCACGAGAGATGT
GTCAATGGACCCGCTAACGTTGTTCATCGTGAAGCGGAAAGAGCTCTCAC
GCTTGAAGGAGGTTCAAGAAGGGGAAGCTCTTGAATCGGTAGAACGATAT
GCCGGAGAGGTTATGGATGTAAACGGACTTCCAGGAGATCTCATCACAAT
GACTGAGCACAGTGACATCATTACAGCCCTAGTACCTGAAAGAATTCGCA
CAGTCATCGCTCGTCAATCAAAGAATCTAGTTTCTATTCATGTGACGGAC
AGTGGTGCGAAATGGGATTCTCAGTGCAGGGATTATACGCGACTTATCCG
CATTGAATTCGTTCTTCCGTGGAAGTCAAAACAGCTCCCACAGGTCCTCG
AAGATATGTCTCGGATAGGAATTCATTTAGTAGATACAGTGGCAGAAACC
AAGATTTCAGCCGCGGCACGCAAAAGAGCCGTAGAGCTACGCAGGAAAGT
ACAACAAGAAAAGGAAAAGAAGCTTCAAAAGGTTAGAGCTGAAGAAGCAG
CTGCTCGTCGACAGGCGAAGAAAAGGGAAGAGGAGGAGGCGGTAGGCAAA
ATGTCTCGTGAAAAGCAGATCAAGTATGAGGAGAAGAAGCGAAAGAAGGA
ACTCAATGCGCGTATGAGAAAGGTTGTGAGAAAATAA
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protein sequence of Ggra8788.t1

>Ggra8788.t1 ID=Ggra8788.t1|Name=Ggra8788.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=379bp
MRHPTKDALQYWLALVRVTCLLCSFVAAEASESQPKSDVQTFISSLVADS
QTVFYFELFVASLVVAYVLGFLYGSYVNLNLARKVARNLHESLDQQFAKF
GAVDGKTLLKDGQSFYWYHATGRRYTSGLTVFMDLAKRMDLFSYTSSFMT
SPQRDRIVFYLPITRDVSMDPLTLFIVKRKELSRLKEVQEGEALESVERY
AGEVMDVNGLPGDLITMTEHSDIITALVPERIRTVIARQSKNLVSIHVTD
SGAKWDSQCRDYTRLIRIEFVLPWKSKQLPQVLEDMSRIGIHLVDTVAET
KISAAARKRAVELRRKVQQEKEKKLQKVRAEEAAARRQAKKREEEEAVGK
MSREKQIKYEEKKRKKELNARMRKVVRK*
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mRNA from alignment at tig00000860_pilon:119193..120329-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8788.t1 ID=Ggra8788.t1|Name=Ggra8788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000860_pilon:119193..120329- (Gracilaria gracilis GNS1m male)
ATGAGGCACCCCACTAAGGATGCTCTCCAGTACTGGCTAGCGCTAGTGCG
AGTGACCTGTTTGCTGTGTTCGTTCGTTGCTGCCGAAGCATCCGAGTCTC
AGCCGAAGTCCGATGTGCAGACGTTCATATCTTCCTTGGTTGCAGACTCT
CAGACAGTCTTTTACTTCGAGCTTTTCGTAGCCTCTCTTGTCGTCGCTTA
CGTACTTGGTTTCTTGTATGGAAGCTACGTGAACTTGAATCTGGCACGCA
AGGTGGCGCGCAACCTGCATGAGAGTCTGGATCAACAGTTTGCTAAGTTT
GGAGCAGTAGATGGTAAGACGCTTCTCAAAGATGGGCAGTCGTTTTACTG
GTACCATGCTACGGGTCGACGATATACATCCGGCCTTACCGTGTTTATGG
ATTTGGCAAAGCGTATGGATTTATTCTCGTATACATCCAGCTTCATGACA
TCGCCACAGCGAGACCGCATTGTTTTTTACTTGCCTATCACGAGAGATGT
GTCAATGGACCCGCTAACGTTGTTCATCGTGAAGCGGAAAGAGCTCTCAC
GCTTGAAGGAGGTTCAAGAAGGGGAAGCTCTTGAATCGGTAGAACGATAT
GCCGGAGAGGTTATGGATGTAAACGGACTTCCAGGAGATCTCATCACAAT
GACTGAGCACAGTGACATCATTACAGCCCTAGTACCTGAAAGAATTCGCA
CAGTCATCGCTCGTCAATCAAAGAATCTAGTTTCTATTCATGTGACGGAC
AGTGGTGCGAAATGGGATTCTCAGTGCAGGGATTATACGCGACTTATCCG
CATTGAATTCGTTCTTCCGTGGAAGTCAAAACAGCTCCCACAGGTCCTCG
AAGATATGTCTCGGATAGGAATTCATTTAGTAGATACAGTGGCAGAAACC
AAGATTTCAGCCGCGGCACGCAAAAGAGCCGTAGAGCTACGCAGGAAAGT
ACAACAAGAAAAGGAAAAGAAGCTTCAAAAGGTTAGAGCTGAAGAAGCAG
CTGCTCGTCGACAGGCGAAGAAAAGGGAAGAGGAGGAGGCGGTAGGCAAA
ATGTCTCGTGAAAAGCAGATCAAGTATGAGGAGAAGAAGCGAAAGAAGGA
ACTCAATGCGCGTATGAGAAAGGTTGTGAGAAAATAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:119193..120329-

>Ggra8788.t1 ID=Ggra8788.t1|Name=Ggra8788.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000860_pilon:119193..120329- (Gracilaria gracilis GNS1m male)
ATGAGGCACCCCACTAAGGATGCTCTCCAGTACTGGCTAGCGCTAGTGCG
AGTGACCTGTTTGCTGTGTTCGTTCGTTGCTGCCGAAGCATCCGAGTCTC
AGCCGAAGTCCGATGTGCAGACGTTCATATCTTCCTTGGTTGCAGACTCT
CAGACAGTCTTTTACTTCGAGCTTTTCGTAGCCTCTCTTGTCGTCGCTTA
CGTACTTGGTTTCTTGTATGGAAGCTACGTGAACTTGAATCTGGCACGCA
AGGTGGCGCGCAACCTGCATGAGAGTCTGGATCAACAGTTTGCTAAGTTT
GGAGCAGTAGATGGTAAGACGCTTCTCAAAGATGGGCAGTCGTTTTACTG
GTACCATGCTACGGGTCGACGATATACATCCGGCCTTACCGTGTTTATGG
ATTTGGCAAAGCGTATGGATTTATTCTCGTATACATCCAGCTTCATGACA
TCGCCACAGCGAGACCGCATTGTTTTTTACTTGCCTATCACGAGAGATGT
GTCAATGGACCCGCTAACGTTGTTCATCGTGAAGCGGAAAGAGCTCTCAC
GCTTGAAGGAGGTTCAAGAAGGGGAAGCTCTTGAATCGGTAGAACGATAT
GCCGGAGAGGTTATGGATGTAAACGGACTTCCAGGAGATCTCATCACAAT
GACTGAGCACAGTGACATCATTACAGCCCTAGTACCTGAAAGAATTCGCA
CAGTCATCGCTCGTCAATCAAAGAATCTAGTTTCTATTCATGTGACGGAC
AGTGGTGCGAAATGGGATTCTCAGTGCAGGGATTATACGCGACTTATCCG
CATTGAATTCGTTCTTCCGTGGAAGTCAAAACAGCTCCCACAGGTCCTCG
AAGATATGTCTCGGATAGGAATTCATTTAGTAGATACAGTGGCAGAAACC
AAGATTTCAGCCGCGGCACGCAAAAGAGCCGTAGAGCTACGCAGGAAAGT
ACAACAAGAAAAGGAAAAGAAGCTTCAAAAGGTTAGAGCTGAAGAAGCAG
CTGCTCGTCGACAGGCGAAGAAAAGGGAAGAGGAGGAGGCGGTAGGCAAA
ATGTCTCGTGAAAAGCAGATCAAGTATGAGGAGAAGAAGCGAAAGAAGGA
ACTCAATGCGCGTATGAGAAAGGTTGTGAGAAAATAA
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