Ggra8785.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8785.t1
Unique NameGgra8785.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length209
Homology
BLAST of Ggra8785.t1 vs. uniprot
Match: A0A2V3IWD6 (RING-type E3 ubiquitin transferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWD6_9FLOR)

HSP 1 Score: 353 bits (907), Expect = 1.920e-122
Identity = 166/208 (79.81%), Postives = 186/208 (89.42%), Query Frame = 0
Query:    1 MGESDSASEHLTRAQQRTQAASQDAPEKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQIDDGENPVPPRPSGHREQPARGMQGVPHFGVHHPTFGRFNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTVFIAVIITTF 208
            M  ++S  EHLT+A+Q + A S +  EKK+EN FECHVCL+APREPVVTPCGHLYCWPCL+RWLRM G+NAQCPVCK+A+ RSSVIPIYGRGGS+SRA+ ++G   VPPRPSGHREQP RGM GVPHFGVHHPTFGRFNPYGAGYEN+GLSAFGFFP+LFG+QIAYPHMNEPPREEP  N+QEDG PDIVAKIFLLLTVFIAVIITTF
Sbjct:    1 MATNNSVPEHLTQARQTSTATSSEVTEKKEENLFECHVCLEAPREPVVTPCGHLYCWPCLFRWLRMQGQNAQCPVCKAAISRSSVIPIYGRGGSSSRARNEEG---VPPRPSGHREQPPRGMPGVPHFGVHHPTFGRFNPYGAGYENVGLSAFGFFPNLFGMQIAYPHMNEPPREEPQQNEQEDGLPDIVAKIFLLLTVFIAVIITTF 205          
BLAST of Ggra8785.t1 vs. uniprot
Match: R7QGZ6 (RING-type E3 ubiquitin transferase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGZ6_CHOCR)

HSP 1 Score: 224 bits (570), Expect = 1.000e-70
Identity = 112/187 (59.89%), Postives = 133/187 (71.12%), Query Frame = 0
Query:   31 ENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQIDDG------ENPVPPRPSGHREQPARGMQGVPH---FGVHHPTFGRFNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTVFIAVIITTF 208
            E+ FEC+VC D P  PVVTPCGHLYCW CLY+W+R   ++ QCPVCK+ VD+ SVIPIYGRG    RA+  D       E  VPPRPSGHR  PA   QG+     FG+ H  FGR NPYGA Y+N+ LS FG FPSLFGLQIAYP +NEPPREE   N  +DG  ++VA++FLLL+VFI +IITTF
Sbjct:   55 ESAFECNVCFDVPTGPVVTPCGHLYCWLCLYKWMRQRADSPQCPVCKAGVDKRSVIPIYGRG----RAEDSDPREHAAPEEDVPPRPSGHRATPAGQTQGMHPGNPFGMQHTPFGRINPYGANYDNVSLSTFGLFPSLFGLQIAYPQVNEPPREELPANP-DDGMSELVARVFLLLSVFIVIIITTF 236          
BLAST of Ggra8785.t1 vs. uniprot
Match: A0A5J4YRT6 (RING-type E3 ubiquitin transferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRT6_PORPP)

HSP 1 Score: 135 bits (340), Expect = 2.680e-35
Identity = 69/159 (43.40%), Postives = 93/159 (58.49%), Query Frame = 0
Query:   24 DAPEKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQ---------CPVCKSAVDRSSVIPIYGRGGSTSRAQIDDGENPVPPRPSGHREQPAR------GMQGVPHFGVHHPTFGRFNPYGAGYENLGLSAFGFFPSLFGLQIAYP 167
            DAP  +  +PFEC++C D PR+PVVT CGHLYCWPCL+RW+ +   +           CPVCKS V +S+VIPIYGR  S ++   +     VPPRP G R +  +      G+   P+FGV  P  GRF+ +   Y +   +AFG FP +FG  + YP
Sbjct:   83 DAP-AETASPFECNICFDLPRDPVVTQCGHLYCWPCLFRWMNVGPSSGAARHPTAPTLCPVCKSVVQKSTVIPIYGRNSSENKDPRESPVEDVPPRPLGQRSEAPQVEARPAGINFPPYFGV--PN-GRFSAHENAYGSFSFTAFGLFPQIFGFYMNYP 237          
BLAST of Ggra8785.t1 vs. uniprot
Match: M2XYA1 (RING-type E3 ubiquitin transferase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XYA1_GALSU)

HSP 1 Score: 130 bits (326), Expect = 6.740e-34
Identity = 71/194 (36.60%), Postives = 98/194 (50.52%), Query Frame = 0
Query:   34 FECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQIDDGEN---PVPPRPSGHREQ------------------PARGMQGVPHFG------VHHPTFGRFNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREE---PHHNQQEDGFPDIVAKIFLLL 197
            F+CH+C D+P +PVVTPCGHLYCW C+Y+W+  H +   CP+CKS++++  +IPIYGR G     Q+D        +P RPSG R +                  P     G P +       VHH  FG F+          +SAFG FPSLFGLQ  YP    PP+     P    +E      V+++ L++
Sbjct:   52 FDCHICFDSPNDPVVTPCGHLYCWSCIYKWMAAHPDCPSCPLCKSSIEKDKIIPIYGRNGQD---QVDPRTKVIPDIPARPSGQRTELPRSSSTSQSSGGGAFHSPHSPFYGSPFYPGPFSSPVHHSNFGPFS----------VSAFGPFPSLFGLQFTYP----PPQSTGSVPETMTEEQANQAFVSRLLLVM 228          
BLAST of Ggra8785.t1 vs. uniprot
Match: R4WD90 (RING-type E3 ubiquitin transferase n=2 Tax=Pentatomomorpha TaxID=33357 RepID=R4WD90_RIPPE)

HSP 1 Score: 127 bits (318), Expect = 2.100e-33
Identity = 71/174 (40.80%), Postives = 94/174 (54.02%), Query Frame = 0
Query:   27 EKKDENP-FECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQIDDGENPVPPRPSGHREQPARGMQGVPHFGV----HHPTFGRFNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFL 195
            E+K+ENP FEC++CLD  ++ VV+ CGHL+CWPCL++WL        CPVCK+A+ +  VIP+YGRG +    Q +D  N VPPRP+G R +P     G P FG      H +FG           +G   FGF  S F      PH   P    P     ED F   ++K+FL
Sbjct:   17 EEKEENPMFECNICLDTAKDAVVSMCGHLFCWPCLHQWLETRPTRQLCPVCKAAIGKDKVIPLYGRGSN----QHEDPRNKVPPRPAGQRTEPENNT-GFPGFGFGDGGFHMSFG-----------IGAFPFGFITSTFN-----PHDQRPSSHAPRGLPNEDEF---ISKMFL 166          
BLAST of Ggra8785.t1 vs. uniprot
Match: D6X296 (RING-type E3 ubiquitin transferase n=2 Tax=Tribolium TaxID=7069 RepID=D6X296_TRICA)

HSP 1 Score: 126 bits (316), Expect = 5.720e-33
Identity = 69/173 (39.88%), Postives = 96/173 (55.49%), Query Frame = 0
Query:   27 EKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQIDDGENPVPPRPSGHREQPARGMQGVPHFGVHHPTFGRFNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTV 199
            +KKD+  FEC++CLD  R+ VV+ CGHL+CWPCL++WL        CPVCK+A+ +  VIP+YGRG +      +D    VPPRP+G R +P  G    P FG     FG  N +   +  +G   FGFF S F    A P  +  PR    H +++      ++K+FL L V
Sbjct:   27 DKKDDRMFECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPNRQVCPVCKAAISKEKVIPLYGRGSTKQ----EDPREKVPPRPAGQRTEPEPGST-FPGFG-----FGGDNGFHMSF-GIGAFPFGFFTSTFNFGDARP--SPAPRGTQQHMEEQ-----FLSKLFLWLAV 181          
BLAST of Ggra8785.t1 vs. uniprot
Match: A0A1Y1KVF0 (RING-type E3 ubiquitin transferase n=3 Tax=Lampyridae TaxID=7049 RepID=A0A1Y1KVF0_PHOPY)

HSP 1 Score: 125 bits (315), Expect = 8.070e-33
Identity = 69/180 (38.33%), Postives = 95/180 (52.78%), Query Frame = 0
Query:   24 DAPEKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQIDDGENPVPPRPSGHREQPARGMQGVPHFGV----HHPTFGRFNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTV 199
            D  EKK++  FEC++CLD  R+ VV+ CGHL+CWPCL++WL        CPVCK+A+ +  V+P+YGRG +      +D    VPPRP+G R +P  G    P FG      H +FG           +G   FGFF S F    A P     P   P H +++      ++K+FL L V
Sbjct:   25 DKEEKKEDRTFECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISKEKVVPLYGRGSTKQ----EDPREKVPPRPAGQRTEPEGGST-FPGFGFGDTGFHMSFG-----------IGAFPFGFFTSTFNFGDARP--GAAPHGTPQHLEEQ-----YLSKLFLWLAV 181          
BLAST of Ggra8785.t1 vs. uniprot
Match: A0A6P7F8S1 (RING-type E3 ubiquitin transferase n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7F8S1_DIAVI)

HSP 1 Score: 125 bits (314), Expect = 1.080e-32
Identity = 67/177 (37.85%), Postives = 92/177 (51.98%), Query Frame = 0
Query:   27 EKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQIDDGENPVPPRPSGHREQPARGMQGVPHFGV----HHPTFGRFNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTV 199
            EKKD++ FEC++CLD  R+ VV+ CGHL+CWPCL++WL        CPVCK+A+ +  V+P+YGRG +      +D    VPPRP+G R +P  G    P FG      H +FG           +G   FGFF S F          +P      H  Q+      ++KIFL L +
Sbjct:   26 EKKDDSMFECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPNRQVCPVCKAAISKEKVVPLYGRGSTKQ----EDPREKVPPRPAGQRTEPEPGTS-FPGFGFGDNSFHMSFG-----------IGAFPFGFFTSTFNF-------GDPRPSAAAHGSQQHMEEQFLSKIFLWLAI 179          
BLAST of Ggra8785.t1 vs. uniprot
Match: E3 ubiquitin-protein ligase RNF185-like n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000873AF17 (E3 ubiquitin-protein ligase RNF185-like n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000873AF17)

HSP 1 Score: 125 bits (314), Expect = 1.080e-32
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 0
Query:   27 EKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQIDDGENPVPPRPSGHREQPARGMQGVPHFGV----HHPTFGRFNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTV 199
            EKKD+  FEC++CLD  R+ VV+ CGHL+CWPCL++WL        CPVCK+A+ +  V+P+YGRG +      +D    VPPRP+G R +P  G    P FG      H +FG           +G   FGFF S   L    P  +  PR    H +++      ++KIFL L +
Sbjct:   26 EKKDDQMFECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPNRQVCPVCKAAISKEKVVPLYGRGSTKQ----EDPREKVPPRPAGQRTEPEPGTS-FPGFGFGDNGFHMSFG-----------IGAFPFGFFTST--LNFGDPRPSAAPRGTQQHMEEQ-----FLSKIFLWLAI 179          
BLAST of Ggra8785.t1 vs. uniprot
Match: A0A2J7PD34 (RING-type E3 ubiquitin transferase n=2 Tax=Polyneoptera TaxID=33341 RepID=A0A2J7PD34_9NEOP)

HSP 1 Score: 125 bits (313), Expect = 1.220e-32
Identity = 67/176 (38.07%), Postives = 93/176 (52.84%), Query Frame = 0
Query:   28 KKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQIDDGENPVPPRPSGHREQPARGMQGVPHFGV----HHPTFGRFNPYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTV 199
            +KDE   EC++CLDA R+ VV+ CGHL+CWPCL++WL        CPVCK+A+ +  V+P+YGRG +      +D  N VPPRP G R +P     G P FG      H +FG           +G   FGFF S F      P  +  PR  P   +++      ++K+FL + V
Sbjct:   19 EKDETMLECNICLDAARDAVVSMCGHLFCWPCLHQWLETRPNRQVCPVCKAAISKEKVVPLYGRGSTKQ----EDPRNKVPPRPPGQRSEPENNS-GFPGFGFGDGGFHMSFG-----------IGAFPFGFFTSTFNF--GEPRPSAAPRGTPQFEEEQ-----FLSKVFLWVAV 171          
The following BLAST results are available for this feature:
BLAST of Ggra8785.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWD61.920e-12279.81RING-type E3 ubiquitin transferase n=1 Tax=Gracila... [more]
R7QGZ61.000e-7059.89RING-type E3 ubiquitin transferase n=1 Tax=Chondru... [more]
A0A5J4YRT62.680e-3543.40RING-type E3 ubiquitin transferase n=1 Tax=Porphyr... [more]
M2XYA16.740e-3436.60RING-type E3 ubiquitin transferase n=1 Tax=Galdier... [more]
R4WD902.100e-3340.80RING-type E3 ubiquitin transferase n=2 Tax=Pentato... [more]
D6X2965.720e-3339.88RING-type E3 ubiquitin transferase n=2 Tax=Triboli... [more]
A0A1Y1KVF08.070e-3338.33RING-type E3 ubiquitin transferase n=3 Tax=Lampyri... [more]
A0A6P7F8S11.080e-3237.85RING-type E3 ubiquitin transferase n=1 Tax=Diabrot... [more]
E3 ubiquitin-protein ligase RNF185-like n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000873AF171.080e-3238.42E3 ubiquitin-protein ligase RNF185-like n=1 Tax=An... [more]
A0A2J7PD341.220e-3238.07RING-type E3 ubiquitin transferase n=2 Tax=Polyneo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 36..76
e-value: 1.4E-9
score: 47.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 36..77
score: 13.640012
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 35..82
e-value: 5.8E-12
score: 45.2
NoneNo IPR availablePIRSRPIRSR004030-1PIRSR004030-1coord: 1..80
e-value: 0.0072
score: 14.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..22
NoneNo IPR availablePANTHERPTHR12313:SF0FI06431P-RELATEDcoord: 7..182
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 170..188
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..169
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 208..208
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 189..207
NoneNo IPR availableCDDcd16745RING-HC_AtRMA_likecoord: 34..78
e-value: 6.87098E-28
score: 97.7599
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 31..89
NoneNo IPR availableTMHMMTMhelixcoord: 144..166
NoneNo IPR availableTMHMMTMhelixcoord: 186..205
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 2..89
e-value: 1.6E-19
score: 71.7
IPR045103E3 ubiquitin-protein ligase RNF5/RNF185-likePANTHERPTHR12313E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATEDcoord: 7..182
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 51..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:114397..115107 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8785.t1Ggra8785.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 114397..115107 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8785.t1 ID=Ggra8785.t1|Name=Ggra8785.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=209bp
MGESDSASEHLTRAQQRTQAASQDAPEKKDENPFECHVCLDAPREPVVTP
CGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQI
DDGENPVPPRPSGHREQPARGMQGVPHFGVHHPTFGRFNPYGAGYENLGL
SAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTVF
IAVIITTF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR045103RNF5/RNF185-like
IPR017907Znf_RING_CS