Ggra8785.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8785.t1
Unique NameGgra8785.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:114397..115107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704949.1
Preferred nameRNF5
PFAMszf-C3HC4,zf-C3HC4_2,zf-C3HC4_3
Max annot lvl2759|Eukaryota
KEGG koko:K05744,ko:K10666
KEGG Pathwayko04141,ko04360,ko04666,ko04810,map04141,map04360,map04666,map04810
GOsGO:0000209,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005740,GO:0005783,GO:0005789,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006517,GO:0006725,GO:0006807,GO:0006810,GO:0006928,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009056,GO:0009057,GO:0009100,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010506,GO:0010507,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0016074,GO:0016241,GO:0016477,GO:0016567,GO:0016740,GO:0018996,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030054,GO:0030154,GO:0030163,GO:0030433,GO:0031090,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031647,GO:0031648,GO:0031966,GO:0031967,GO:0031975,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033554,GO:0034247,GO:0034470,GO:0034641,GO:0034660,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0036513,GO:0040011,GO:0040039,GO:0042175,GO:0042221,GO:0042303,GO:0042692,GO:0042802,GO:0043144,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043412,GO:0043632,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051146,GO:0051179,GO:0051234,GO:0051603,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0051788,GO:0051865,GO:0055001,GO:0055002,GO:0055085,GO:0055120,GO:0061061,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0070534,GO:0070647,GO:0070887,GO:0070936,GO:0071218,GO:0071310,GO:0071704,GO:0071712,GO:0090304,GO:0098796,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902115,GO:1904380,GO:1990904,GO:2000785
Evalue6.51e-34
EggNOG OGsCOG5574@1|root,KOG0823@2759|Eukaryota
EC2.3.2.27,2.7.11.1
DescriptionER-associated misfolded protein catabolic process
COG categoryO
BRITEko00000,ko00001,ko01000,ko01001,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8785Ggra8785Gracilaria gracilis GNS1m malegenetig00000860_pilon 114397..115107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8785.t1Ggra8785.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 114397..115107 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8785.t1.stop1Ggra8785.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 114397..114399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8785.t1.CDS1Ggra8785.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 114397..114455 -
Ggra8785.t1.CDS2Ggra8785.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 114540..115107 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8785.t1.exon1Ggra8785.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 114397..114455 -
Ggra8785.t1.exon2Ggra8785.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 114540..115107 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8785.t1.intron1Ggra8785.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 114456..114539 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8785.t1.start1Ggra8785.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 115105..115107 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8785.t1 ID=Ggra8785.t1|Name=Ggra8785.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=209bp
MGESDSASEHLTRAQQRTQAASQDAPEKKDENPFECHVCLDAPREPVVTP
CGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQI
DDGENPVPPRPSGHREQPARGMQGVPHFGVHHPTFGRFNPYGAGYENLGL
SAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTVF
IAVIITTF*
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spliced messenger RNA

>Ggra8785.t1 ID=Ggra8785.t1|Name=Ggra8785.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000860_pilon:114397..115107- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGAAAGCGACTCCGCCTCCGAACATCTGACAAGAGCCCAGCAGCG
GACGCAGGCCGCTTCACAAGACGCGCCCGAGAAAAAGGATGAGAACCCGT
TCGAGTGCCACGTCTGCCTTGACGCACCACGAGAGCCCGTCGTCACTCCA
TGTGGCCATCTCTACTGCTGGCCTTGTCTGTATCGCTGGCTAAGAATGCA
CGGTGAGAACGCACAATGTCCGGTTTGCAAGTCTGCCGTGGATAGGAGCT
CAGTCATTCCAATATACGGTCGCGGTGGCTCTACTTCTCGCGCTCAAATT
GACGACGGAGAGAATCCAGTTCCTCCTAGACCTTCCGGACATCGCGAACA
ACCTGCACGCGGCATGCAGGGTGTACCCCATTTTGGCGTCCATCACCCTA
CCTTCGGTCGTTTCAACCCCTACGGAGCTGGCTACGAGAACTTGGGATTG
TCTGCGTTTGGATTCTTTCCGAGCCTCTTTGGCTTACAAATTGCTTATCC
TCACATGAACGAGCCCCCCAGGGAAGAGCCTCACCATAATCAACAAGAAG
ACGGTTTTCCGGATATAGTTGCTAAGATCTTTTTACTTCTTACAGTTTTC
ATAGCGGTGATCATCACCACTTTCTAG
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protein sequence of Ggra8785.t1

>Ggra8785.t1 ID=Ggra8785.t1|Name=Ggra8785.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=209bp
MGESDSASEHLTRAQQRTQAASQDAPEKKDENPFECHVCLDAPREPVVTP
CGHLYCWPCLYRWLRMHGENAQCPVCKSAVDRSSVIPIYGRGGSTSRAQI
DDGENPVPPRPSGHREQPARGMQGVPHFGVHHPTFGRFNPYGAGYENLGL
SAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTVF
IAVIITTF*
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mRNA from alignment at tig00000860_pilon:114397..115107-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8785.t1 ID=Ggra8785.t1|Name=Ggra8785.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000860_pilon:114397..115107- (Gracilaria gracilis GNS1m male)
ATGGGGGAAAGCGACTCCGCCTCCGAACATCTGACAAGAGCCCAGCAGCG
GACGCAGGCCGCTTCACAAGACGCGCCCGAGAAAAAGGATGAGAACCCGT
TCGAGTGCCACGTCTGCCTTGACGCACCACGAGAGCCCGTCGTCACTCCA
TGTGGCCATCTCTACTGCTGGCCTTGTCTGTATCGCTGGCTAAGAATGCA
CGGTGAGAACGCACAATGTCCGGTTTGCAAGTCTGCCGTGGATAGGAGCT
CAGTCATTCCAATATACGGTCGCGGTGGCTCTACTTCTCGCGCTCAAATT
GACGACGGAGAGAATCCAGTTCCTCCTAGACCTTCCGGACATCGCGAACA
ACCTGCACGCGGCATGCAGGGTGTACCCCATTTTGGCGTCCATCACCCTA
CCTTCGGTCGTTTCAACCCCTACGGAGCTGGCTACGAGAACTTGGGATTG
TCTGCGTTTGGATTCTTTCCGAGCCTCTTTGGCTTACAAATTGCTTATCC
TCACATGAACGAGCCCCCCAGGGAAGAGCCTCACCATAATCAACAAGAAG
ACGGTTTTCCGGATATAGGTATGTTACGTCGCTCCTTATCCATTCACCTG
TACATCTGCTCAGCTTCCTAACTTGTCTTTTGTTTTGATTTAACCTGCAA
AGTTGCTAAGATCTTTTTACTTCTTACAGTTTTCATAGCGGTGATCATCA
CCACTTTCTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:114397..115107-

>Ggra8785.t1 ID=Ggra8785.t1|Name=Ggra8785.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=627bp|location=Sequence derived from alignment at tig00000860_pilon:114397..115107- (Gracilaria gracilis GNS1m male)
ATGGGGGAAAGCGACTCCGCCTCCGAACATCTGACAAGAGCCCAGCAGCG
GACGCAGGCCGCTTCACAAGACGCGCCCGAGAAAAAGGATGAGAACCCGT
TCGAGTGCCACGTCTGCCTTGACGCACCACGAGAGCCCGTCGTCACTCCA
TGTGGCCATCTCTACTGCTGGCCTTGTCTGTATCGCTGGCTAAGAATGCA
CGGTGAGAACGCACAATGTCCGGTTTGCAAGTCTGCCGTGGATAGGAGCT
CAGTCATTCCAATATACGGTCGCGGTGGCTCTACTTCTCGCGCTCAAATT
GACGACGGAGAGAATCCAGTTCCTCCTAGACCTTCCGGACATCGCGAACA
ACCTGCACGCGGCATGCAGGGTGTACCCCATTTTGGCGTCCATCACCCTA
CCTTCGGTCGTTTCAACCCCTACGGAGCTGGCTACGAGAACTTGGGATTG
TCTGCGTTTGGATTCTTTCCGAGCCTCTTTGGCTTACAAATTGCTTATCC
TCACATGAACGAGCCCCCCAGGGAAGAGCCTCACCATAATCAACAAGAAG
ACGGTTTTCCGGATATAGTTGCTAAGATCTTTTTACTTCTTACAGTTTTC
ATAGCGGTGATCATCACCACTTTCTAG
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