Ggra8778.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8778.t1
Unique NameGgra8778.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length412
Homology
BLAST of Ggra8778.t1 vs. uniprot
Match: A0A2V3IXI7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXI7_9FLOR)

HSP 1 Score: 325 bits (832), Expect = 7.420e-105
Identity = 178/355 (50.14%), Postives = 249/355 (70.14%), Query Frame = 0
Query:   69 RRVPTYKKLQRRERKGPAY------ERESARAATDAQRDTPSPA-EQPH-SDDKPPVQRQKREITLNFSDIFVGEKLHGVVRNTVPHGAYVNVGAEKDGLVHLRNMSVDFVHMPSDLVREGDSVTVWVKYVDPARKILGLTMVKPHLGFESRIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHVTAMWGERQRDTLDYLRLGQTIWVHVAEIDLRKSHVRLWARAENGGRLTDTNPVSQVYLGPEVVDVQPREAPRPTRRSWQ-----PETLEQEEDHSDQDDSXXEEQVQSAVLDQVEDAFNDEEFSFAEELSDWTEEN----RGPSENKIRGLEEIAHLFTDDTEFV 406
            +RVPTY+K+Q R R+GPA+      +R+ +  A  AQ +T S   E P+ +D++PP+ ++       FSDI +GE+L GVVRNTVPHGAYV+VGAEKDGLVH+R+M+VDFVH P+D+VR GD+VTVWVK+V+ ++++LGLTMVKPHLGFESRIK+ ++  GGRY+GV+ER+TNYGAY+DIGAERQAFLHV A+WG   R+TLD+LRLGQ IWVHVAE+D +++H+RLWAR ++   LT T  +  + +  E   V+    P PT R+W         + Q E+ S++DDS             V+  + ++EFSFAE+ S+W +E+    R P  ++   L E+AH+F + TEF+
Sbjct:   66 KRVPTYRKMQNRHRQGPAFHRREQQDRKLSEIADGAQSETQSQIQENPNKTDEQPPLPKRP------FSDIRLGERLFGVVRNTVPHGAYVDVGAEKDGLVHVRDMAVDFVHTPTDIVRSGDTVTVWVKFVNASKRVLGLTMVKPHLGFESRIKMKDIVEGGRYQGVIERITNYGAYVDIGAERQAFLHVAALWGALPRETLDFLRLGQKIWVHVAEVDTQRNHIRLWARGKDDLPLTYTTEILTIPVHSEQ-RVEDAPVPTPTLRAWDVNKTGDSDVNQVEEGSEEDDS-------------VQHEYEEDEFSFAEDDSEWLDESITGKRKP--HQTDNLREVAHMFDEATEFI 398          
BLAST of Ggra8778.t1 vs. uniprot
Match: A0A1X6P2E1 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2E1_PORUM)

HSP 1 Score: 155 bits (392), Expect = 6.870e-40
Identity = 76/171 (44.44%), Postives = 111/171 (64.91%), Query Frame = 0
Query:  131 IFVGEKLHGVVRNTVPHGAYVNVGAEKDGLVHLRNMSVDFVHMPSDLVREGDSVTVWVKYVDPARKILGLTMVKPHLGFES--------RIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHVTAMWGERQRDTLDYLRLGQTIWVHVAEIDLRKSHVRLWARAEN 293
            +  G++L G V N V HGAYV+VGA  DGLVHLR+MSV+FVH P D++  GD+V V+VKY +     L L++++P     +        R ++ +V VG R  G V RV+N+GAY+D+GA    F+HV+ ++G R R TL+ LRLGQ +WV V  +D+ +S ++L AR  +
Sbjct:  120 LVAGQRLDGTVTNLVKHGAYVDVGATTDGLVHLRDMSVEFVHEPEDILAPGDTVEVYVKYAEEVTGRLALSLLRPRPSVATPLPQAARGRTRLVDVAVGSRVLGTVRRVSNFGAYVDVGAAMDGFVHVSLLYGRRPRRTLEELRLGQELWVVVDAVDVARSAIKLRARGRS 290          
BLAST of Ggra8778.t1 vs. uniprot
Match: A0A0M8KAN0 (Small subunit ribosomal protein S1 n=2 Tax=Ardenticatenia TaxID=1382928 RepID=A0A0M8KAN0_9CHLR)

HSP 1 Score: 136 bits (343), Expect = 2.010e-33
Identity = 66/179 (36.87%), Postives = 110/179 (61.45%), Query Frame = 0
Query:  119 RQKREITLNFSDIFVGEKLHGVVRNTVPHGAYVNVGAEKDGLVHLRNMSVDFVHMPSDLVREGDSVTVWVKYVDPARKILGLTMVKPHLGFES-------RIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHVTAMWGERQRDTLDYLRLGQTIWVHVAEIDLRKSHVRLWAR 290
            +Q+REIT++  ++  G +L G+VR+T  +GA+V++GAE DGLVH+  +   FV    D+V EGD VTVWVK +D  RK + LTM+ P+   ES       ++++ ++E G  + G+V  + ++GA++DIGAE    +H++ +  ER     D + +GQ + V +  ID ++  + L  R
Sbjct:   67 KQQREITVHMDELTPGMELKGIVRSTQDYGAFVDIGAETDGLVHISELKDGFVEKVEDVVSEGDEVTVWVKEIDLERKRISLTMIDPNAPRESQREADDGKLRLRDLEEGQEFTGIVTSIVDFGAFVDIGAETDGLVHISELSEERVNRVEDVVEVGQEVKVRIIGIDRKRKRISLSMR 245          
BLAST of Ggra8778.t1 vs. uniprot
Match: A0A5J4YU14 (30S ribosomal protein S1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU14_PORPP)

HSP 1 Score: 134 bits (336), Expect = 1.990e-32
Identity = 66/159 (41.51%), Postives = 103/159 (64.78%), Query Frame = 0
Query:  133 VGEKLHGVVRNTVPHGAYVNVGAEKDGLVHLRNMSVDFVHMPSDLVREGDSVTVWVKYVDPARKILGLTMVKPHLGFESRIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHVTAMWGERQRDTLDYLRLGQTIWVHVAEIDLRKSHVRLWARA 291
            +G+K+ G V   VP GA+V++GA K GL+H+R+MS +FV  P D+V     V V++KY+D  ++ L L+++ P         +A   +G   +G V+RVTNYG ++D+GA   AFLHV+ +WG R R+T++ +R G+T+   V+ ID  KS +R+ ARA
Sbjct:  101 MGQKVTGKVFRLVPFGAFVDIGATKAGLLHVRDMSTEFVDRPEDVVSNKQVVEVYIKYLDVEQQKLALSLL-PRTATSRDKNLANFALGEEVKGTVQRVTNYGVFLDVGASCDAFLHVSDIWGRRPRETMESMRFGETVRAWVSHIDETKSFLRVSARA 258          
BLAST of Ggra8778.t1 vs. uniprot
Match: A0A7S0MIS4 (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MIS4_9CRYP)

HSP 1 Score: 127 bits (320), Expect = 1.870e-30
Identity = 73/196 (37.24%), Postives = 111/196 (56.63%), Query Frame = 0
Query:  121 KREITLNFSDIFVGE-KLHGVVRNTVPHGAYVNVGAEKDGLVHLRNMSVDFVHMPSDLVREGDSVTVWVKYVDPARKILGLTMVKPHLGFESRIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHVTAMWGERQ---RDTLDYLRLGQTIWVHVAEIDLRKSHVRLWA-----RAENGGRLTDTNPVSQVY 307
            KR+I     D+  G+  + G+VRN    GA+V+VGAE+DG VH+ ++S +F+H PSD +R G  +  WVKYVD A+  LGLTM+ P    E+ ++  E+ VG      + R+T++G ++DI A+   F+H T +   R    R +LD L +GQT+ V V E+DL +  V + +       E  GR        QV+
Sbjct:   75 KRKIMNPLKDLQYGQGPIKGIVRNVESFGAFVDVGAERDGFVHVSDISTEFIHQPSDFLRSGKQIDCWVKYVDEAQGKLGLTMI-PRKHGETPLE--EIAVGSELGAKILRITSFGIFVDINAQADGFMHSTKLPRRRNSASRVSLDELSIGQTLGVRVTEVDLVRRRVAVESVDKVTEVERDGRFAAPRTPGQVF 267          
BLAST of Ggra8778.t1 vs. uniprot
Match: A0A7C7UEQ3 (30S ribosomal protein S1 n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7UEQ3_9CHLR)

HSP 1 Score: 119 bits (298), Expect = 9.520e-28
Identity = 72/214 (33.64%), Postives = 117/214 (54.67%), Query Frame = 0
Query:  127 NFSDIFVGEKLHGVVRNTVPHGAYVNVGAEKDGLVHLRNMSVDFVHMPSDLVREGDSVTVWVKYVDPARKILGLTMVKPHLGFESRIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHVTAMWGERQRDTLDYLRLGQTIWVHVAEIDLRKSHVRLWA---RAENGGRLTDTNPVSQVYLGPEVVDVQPREAPRPTRRSWQPETLEQEE 337
            + SD+    +L G V+ T  +GA V++G E DG++H+  +S + V+  SD+V+ GDSVTVWV  VDPA+  +GLTMV+P      ++   E+  G  Y G V R+  YG ++DIGAER   LHV  M     R   + +++G+ + V + +++ RK  + L      AE+  +  +    + + +  E    QP E+ R   R   P+  E+E+
Sbjct:   13 SISDLQPKMRLRGTVKETQLYGAVVDIGLEYDGVIHISQLSSEHVNRVSDVVQPGDSVTVWVTKVDPAKGRIGLTMVEP-----PQVDWHELAEGQIYTGTVTRIEPYGVFVDIGAERPGLLHVREMSAGYVRHPSELVQIGEKVEVRILKLNRRKRRIDLTMMGIEAESEDKPEEQPVKTAMEIALERAQGQPSESKRRHERRRPPDLSERED 221          
BLAST of Ggra8778.t1 vs. uniprot
Match: A0A7C7VSR6 (S1 RNA-binding domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7VSR6_9CHLR)

HSP 1 Score: 117 bits (292), Expect = 8.090e-27
Identity = 62/160 (38.75%), Postives = 91/160 (56.88%), Query Frame = 0
Query:  128 FSDIFVGEKLHGVVRNTVPHGAYVNVGAEKDGLVHLRNMSVDFVHMPSDLVREGDSVTVWVKYVDPARKILGLTMVKPHLGFESRIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHVTAMWGERQRDTLDYLRLGQTIWVHVAEIDLRKSHVRL 287
             SD+    KL G +R    +GA+V++G E+DGL+H+  +S   V   SD+V+EGD VTVWV  VDP +  +GLTMV+P      +++  E++ G  Y G + R+  YG ++DIGA R   LHV  M G   R   +  R G  + V +  +D RK  + L
Sbjct:   22 ISDLRPKMKLEGTIRRVELYGAFVDIGLERDGLIHISQLSNRRVDRVSDVVKEGDRVTVWVARVDPEQGRIGLTMVEP-----PKVEWRELKEGQSYTGRIVRMERYGVFVDIGAGRPGLLHVREMGGRVFRHPSELFREGDEVEVRILSLDRRKKRIDL 176          
BLAST of Ggra8778.t1 vs. uniprot
Match: A0A523YWY0 (S1 RNA-binding domain-containing protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A523YWY0_9CHLR)

HSP 1 Score: 116 bits (291), Expect = 1.460e-26
Identity = 67/202 (33.17%), Postives = 109/202 (53.96%), Query Frame = 0
Query:  119 RQKREITLNFSDIFVGEKLHGVVRNTVPHGAYVNVGAEKDGLVHLRNMSVDFVHMPSDLVREGDSVTVWVKYVDPARKILGLTMVKPHLGFESRIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHVTAMWGERQRDTLDYLRLGQTIWVHVAEIDLRKSHVRLWARAENGGRLTDTNPVSQVYLGPEVVDVQPREA 320
            +++ +   +  D+   +KLHG +      GA+V+VG E  GL+H+  +    ++   D+V +GD V VWV  VDP    L LT++KP       +K  +++ G +Y G V R+  +GA+IDIGAER   +HV+ M  E   D  + +++G+ + V V E+D +K  +RL  +A       D  P  Q  L P  +++  REA
Sbjct:   12 KEETQSIKSLKDLKPAQKLHGKISKIELFGAFVDVGLEHQGLIHISQLKRGQINRVDDIVHQGDEVDVWVLRVDPTADRLDLTLIKP-----VGLKWKDIQPGNKYSGEVIRLEKFGAFIDIGAERPGLVHVSEMRDEYVSDPGELVKVGEKVDVSVLEVDSKKRQIRLSMKAAEMVETLDDEP--QEVL-PTAMEIALREA 205          
BLAST of Ggra8778.t1 vs. uniprot
Match: R7QIP7 (S1 motif domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIP7_CHOCR)

HSP 1 Score: 113 bits (282), Expect = 4.670e-26
Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = 0
Query:  215 VAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHVTAMWGERQRDTLDYLRLGQTIWVHVAEIDLRKSHVRLWARAENGGRLTDTNPVSQVYL--GPEVVDVQPREAPRPTRRSWQPETLEQEEDHSDQ 342
            + +VE+G RY G VERVTNYGAY+DIGAER  FLHV A+WG R R+TL+ LR+G+++WV+V ++D  +SH+RL AR      L    P+ ++    G +  D Q     +  +R W     E+++D +D+
Sbjct:    3 IRDVEIGKRYEGTVERVTNYGAYVDIGAERLGFLHVAAIWGRRPRETLEQLRIGESVWVNVDDVDEIRSHIRLRARGRRHTELRKDGPLGELARMEGDDQADGQEVVIRQAVQRPWSERDEEEDKDGTDE 132          
BLAST of Ggra8778.t1 vs. uniprot
Match: A0A7S2V5P7 (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P7_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.350e-25
Identity = 72/197 (36.55%), Postives = 111/197 (56.35%), Query Frame = 0
Query:  120 QKREITLNFSDIFVGEKLHGVVRNTVPHGAYVNVGAEKDGLVHLRNM-SVDFVHMPSDLVREGDSVTVWVKYVDPARKILGLTM--------------VKPHLGFESRIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHVTAMWGERQRDTLDYLRL------------GQTIWVHVAEIDLRKSHVRLWA 289
            +KR ++   S++  G++L+G VRN    GA+V+VGAEKDGL+H+++M S  +V    ++ + GD V+V VK+VD  +++LGLTM              V   L    R  +  +E   +  GVVERVT++GA++DIGAE QAFLH+           LDY R             GQ + ++V E++L K+ V++ A
Sbjct:  132 KKRVVSKPLSELQAGDRLNGTVRNVEKFGAFVHVGAEKDGLLHIKDMCSAQWVSRADEVFKSGDEVSVQVKFVDAEKRLLGLTMKELDDQGMPMIPEEVASALANLDRQSLKNLEEDDQVWGVVERVTSFGAFVDIGAEVQAFLHI-----------LDYPRRVKAASATKSFHRGQRLRLYVKEVELDKNRVKVTA 317          
The following BLAST results are available for this feature:
BLAST of Ggra8778.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXI77.420e-10550.14Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6P2E16.870e-4044.44Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A0M8KAN02.010e-3336.87Small subunit ribosomal protein S1 n=2 Tax=Ardenti... [more]
A0A5J4YU141.990e-3241.5130S ribosomal protein S1 n=1 Tax=Porphyridium purp... [more]
A0A7S0MIS41.870e-3037.24Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7C7UEQ39.520e-2833.6430S ribosomal protein S1 n=1 Tax=Anaerolineae bact... [more]
A0A7C7VSR68.090e-2738.75S1 RNA-binding domain-containing protein n=1 Tax=A... [more]
A0A523YWY01.460e-2633.17S1 RNA-binding domain-containing protein n=1 Tax=A... [more]
R7QIP74.670e-2643.08S1 motif domain-containing protein n=1 Tax=Chondru... [more]
A0A7S2V5P71.350e-2536.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 132..203
e-value: 4.7E-11
score: 52.7
coord: 219..290
e-value: 7.3E-8
score: 42.1
NoneNo IPR availableGENE3D2.40.50.140coord: 210..293
e-value: 7.1E-13
score: 50.2
coord: 117..205
e-value: 2.1E-16
score: 61.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..374
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 318..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 314..389
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 375..389
NoneNo IPR availablePANTHERPTHR1072430S RIBOSOMAL PROTEIN S1coord: 130..202
NoneNo IPR availablePANTHERPTHR1072430S RIBOSOMAL PROTEIN S1coord: 133..282
NoneNo IPR availablePANTHERPTHR1072430S RIBOSOMAL PROTEIN S1coord: 215..287
IPR003029S1 domainPFAMPF00575S1coord: 132..196
e-value: 1.6E-9
score: 37.9
coord: 218..287
e-value: 4.0E-8
score: 33.5
IPR003029S1 domainPROSITEPS50126S1coord: 221..290
score: 14.756466
IPR003029S1 domainPROSITEPS50126S1coord: 134..203
score: 15.431423
IPR035104Ribosomal protein S1-likePANTHERPTHR10724:SF730S RIBOSOMAL PROTEIN S1, CHLOROPLASTICcoord: 215..287
IPR035104Ribosomal protein S1-likePANTHERPTHR10724:SF730S RIBOSOMAL PROTEIN S1, CHLOROPLASTICcoord: 133..282
IPR035104Ribosomal protein S1-likePANTHERPTHR10724:SF730S RIBOSOMAL PROTEIN S1, CHLOROPLASTICcoord: 130..202
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 216..287
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 123..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:96526..97761 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8778.t1Ggra8778.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 96526..97761 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8778.t1 ID=Ggra8778.t1|Name=Ggra8778.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=412bp
MHAFCAPLAVPRARVNGGALCARWSPAPRLPRGATPPLSARRAGGSAPTS
AARGSSRSRKGTNASQNSRRVPTYKKLQRRERKGPAYERESARAATDAQR
DTPSPAEQPHSDDKPPVQRQKREITLNFSDIFVGEKLHGVVRNTVPHGAY
VNVGAEKDGLVHLRNMSVDFVHMPSDLVREGDSVTVWVKYVDPARKILGL
TMVKPHLGFESRIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHV
TAMWGERQRDTLDYLRLGQTIWVHVAEIDLRKSHVRLWARAENGGRLTDT
NPVSQVYLGPEVVDVQPREAPRPTRRSWQPETLEQEEDHSDQDDSEEEEQ
VQSAVLDQVEDAFNDEEFSFAEELSDWTEENRGPSENKIRGLEEIAHLFT
DDTEFVTEEDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR003029S1_domain
IPR035104Ribosomal_protein_S1-like
IPR012340NA-bd_OB-fold