Ggra8778.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8778.t1
Unique NameGgra8778.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:96526..97761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926550.CLDAP_39600
PFAMsS1
Max annot lvl200795|Chloroflexi
Evalue4.98e-21
EggNOG OGsCOG0539@1|root,COG0539@2|Bacteria,2G90B@200795|Chloroflexi
DescriptionPFAM RNA binding S1 domain protein
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8778Ggra8778Gracilaria gracilis GNS1m malegenetig00000860_pilon 96526..97761 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8778.t1.stop1Ggra8778.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 96526..96528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8778.t1.CDS1Ggra8778.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 96526..97761 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8778.t1.exon1Ggra8778.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 96526..97761 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8778.t1.start1Ggra8778.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 97759..97761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8778.t1Ggra8778.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 96526..97761 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8778.t1 ID=Ggra8778.t1|Name=Ggra8778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=412bp
MHAFCAPLAVPRARVNGGALCARWSPAPRLPRGATPPLSARRAGGSAPTS
AARGSSRSRKGTNASQNSRRVPTYKKLQRRERKGPAYERESARAATDAQR
DTPSPAEQPHSDDKPPVQRQKREITLNFSDIFVGEKLHGVVRNTVPHGAY
VNVGAEKDGLVHLRNMSVDFVHMPSDLVREGDSVTVWVKYVDPARKILGL
TMVKPHLGFESRIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHV
TAMWGERQRDTLDYLRLGQTIWVHVAEIDLRKSHVRLWARAENGGRLTDT
NPVSQVYLGPEVVDVQPREAPRPTRRSWQPETLEQEEDHSDQDDSEEEEQ
VQSAVLDQVEDAFNDEEFSFAEELSDWTEENRGPSENKIRGLEEIAHLFT
DDTEFVTEEDS*
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spliced messenger RNA

>Ggra8778.t1 ID=Ggra8778.t1|Name=Ggra8778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000860_pilon:96526..97761- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCCTTCTGCGCACCGCTTGCGGTGCCGCGAGCGCGCGTGAACGG
CGGCGCTCTGTGCGCGCGTTGGTCGCCAGCGCCGCGGCTGCCACGCGGCG
CCACGCCGCCGCTTTCGGCGCGCCGCGCTGGCGGCTCTGCGCCCACTTCG
GCGGCGCGCGGCAGCAGCCGCAGCAGGAAGGGCACCAATGCCTCGCAGAA
CAGTCGGCGCGTGCCGACGTACAAGAAGCTGCAGCGCCGCGAACGAAAGG
GGCCTGCGTATGAGCGCGAGTCGGCGCGTGCTGCCACGGACGCGCAGCGG
GACACACCCAGCCCAGCTGAGCAGCCGCACTCGGATGACAAGCCGCCCGT
GCAGCGGCAGAAACGGGAGATCACGCTCAACTTTTCTGACATCTTCGTCG
GCGAGAAGTTGCATGGCGTGGTACGAAATACCGTTCCGCACGGCGCGTAC
GTTAATGTCGGCGCTGAGAAGGACGGGCTTGTACACTTGCGTAACATGTC
TGTGGACTTTGTTCATATGCCATCCGATCTCGTTCGCGAAGGAGACTCCG
TTACCGTCTGGGTCAAGTACGTCGACCCTGCGAGGAAGATACTGGGTCTT
ACCATGGTCAAGCCGCACTTGGGCTTTGAGTCCCGCATCAAAGTGGCTGA
AGTTGAGGTGGGCGGTCGCTACCGCGGCGTCGTGGAACGCGTCACCAACT
ATGGAGCCTATATCGATATCGGAGCCGAACGGCAGGCGTTTTTGCATGTC
ACCGCCATGTGGGGAGAACGTCAGAGGGATACATTGGACTACCTTCGACT
CGGACAGACCATTTGGGTACATGTGGCAGAAATAGACCTTCGGAAAAGTC
ATGTACGACTGTGGGCAAGGGCAGAAAACGGAGGCAGGTTGACGGACACC
AATCCAGTTTCACAAGTTTACTTGGGTCCAGAAGTTGTTGACGTTCAACC
CCGCGAAGCTCCGAGGCCCACCAGACGTAGCTGGCAGCCTGAAACTTTGG
AGCAGGAGGAGGACCATAGTGATCAGGACGATAGTGAGGAAGAAGAGCAA
GTCCAGAGTGCTGTGCTGGACCAAGTTGAGGACGCTTTCAATGATGAGGA
GTTTTCGTTTGCGGAAGAACTGTCTGATTGGACTGAAGAGAATAGAGGTC
CTAGCGAGAACAAGATTAGGGGCCTGGAAGAAATTGCTCACCTGTTTACG
GACGACACCGAGTTTGTCACAGAAGAAGATAGCTAA
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protein sequence of Ggra8778.t1

>Ggra8778.t1 ID=Ggra8778.t1|Name=Ggra8778.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=412bp
MHAFCAPLAVPRARVNGGALCARWSPAPRLPRGATPPLSARRAGGSAPTS
AARGSSRSRKGTNASQNSRRVPTYKKLQRRERKGPAYERESARAATDAQR
DTPSPAEQPHSDDKPPVQRQKREITLNFSDIFVGEKLHGVVRNTVPHGAY
VNVGAEKDGLVHLRNMSVDFVHMPSDLVREGDSVTVWVKYVDPARKILGL
TMVKPHLGFESRIKVAEVEVGGRYRGVVERVTNYGAYIDIGAERQAFLHV
TAMWGERQRDTLDYLRLGQTIWVHVAEIDLRKSHVRLWARAENGGRLTDT
NPVSQVYLGPEVVDVQPREAPRPTRRSWQPETLEQEEDHSDQDDSEEEEQ
VQSAVLDQVEDAFNDEEFSFAEELSDWTEENRGPSENKIRGLEEIAHLFT
DDTEFVTEEDS*
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mRNA from alignment at tig00000860_pilon:96526..97761-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8778.t1 ID=Ggra8778.t1|Name=Ggra8778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000860_pilon:96526..97761- (Gracilaria gracilis GNS1m male)
ATGCACGCCTTCTGCGCACCGCTTGCGGTGCCGCGAGCGCGCGTGAACGG
CGGCGCTCTGTGCGCGCGTTGGTCGCCAGCGCCGCGGCTGCCACGCGGCG
CCACGCCGCCGCTTTCGGCGCGCCGCGCTGGCGGCTCTGCGCCCACTTCG
GCGGCGCGCGGCAGCAGCCGCAGCAGGAAGGGCACCAATGCCTCGCAGAA
CAGTCGGCGCGTGCCGACGTACAAGAAGCTGCAGCGCCGCGAACGAAAGG
GGCCTGCGTATGAGCGCGAGTCGGCGCGTGCTGCCACGGACGCGCAGCGG
GACACACCCAGCCCAGCTGAGCAGCCGCACTCGGATGACAAGCCGCCCGT
GCAGCGGCAGAAACGGGAGATCACGCTCAACTTTTCTGACATCTTCGTCG
GCGAGAAGTTGCATGGCGTGGTACGAAATACCGTTCCGCACGGCGCGTAC
GTTAATGTCGGCGCTGAGAAGGACGGGCTTGTACACTTGCGTAACATGTC
TGTGGACTTTGTTCATATGCCATCCGATCTCGTTCGCGAAGGAGACTCCG
TTACCGTCTGGGTCAAGTACGTCGACCCTGCGAGGAAGATACTGGGTCTT
ACCATGGTCAAGCCGCACTTGGGCTTTGAGTCCCGCATCAAAGTGGCTGA
AGTTGAGGTGGGCGGTCGCTACCGCGGCGTCGTGGAACGCGTCACCAACT
ATGGAGCCTATATCGATATCGGAGCCGAACGGCAGGCGTTTTTGCATGTC
ACCGCCATGTGGGGAGAACGTCAGAGGGATACATTGGACTACCTTCGACT
CGGACAGACCATTTGGGTACATGTGGCAGAAATAGACCTTCGGAAAAGTC
ATGTACGACTGTGGGCAAGGGCAGAAAACGGAGGCAGGTTGACGGACACC
AATCCAGTTTCACAAGTTTACTTGGGTCCAGAAGTTGTTGACGTTCAACC
CCGCGAAGCTCCGAGGCCCACCAGACGTAGCTGGCAGCCTGAAACTTTGG
AGCAGGAGGAGGACCATAGTGATCAGGACGATAGTGAGGAAGAAGAGCAA
GTCCAGAGTGCTGTGCTGGACCAAGTTGAGGACGCTTTCAATGATGAGGA
GTTTTCGTTTGCGGAAGAACTGTCTGATTGGACTGAAGAGAATAGAGGTC
CTAGCGAGAACAAGATTAGGGGCCTGGAAGAAATTGCTCACCTGTTTACG
GACGACACCGAGTTTGTCACAGAAGAAGATAGCTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:96526..97761-

>Ggra8778.t1 ID=Ggra8778.t1|Name=Ggra8778.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000860_pilon:96526..97761- (Gracilaria gracilis GNS1m male)
ATGCACGCCTTCTGCGCACCGCTTGCGGTGCCGCGAGCGCGCGTGAACGG
CGGCGCTCTGTGCGCGCGTTGGTCGCCAGCGCCGCGGCTGCCACGCGGCG
CCACGCCGCCGCTTTCGGCGCGCCGCGCTGGCGGCTCTGCGCCCACTTCG
GCGGCGCGCGGCAGCAGCCGCAGCAGGAAGGGCACCAATGCCTCGCAGAA
CAGTCGGCGCGTGCCGACGTACAAGAAGCTGCAGCGCCGCGAACGAAAGG
GGCCTGCGTATGAGCGCGAGTCGGCGCGTGCTGCCACGGACGCGCAGCGG
GACACACCCAGCCCAGCTGAGCAGCCGCACTCGGATGACAAGCCGCCCGT
GCAGCGGCAGAAACGGGAGATCACGCTCAACTTTTCTGACATCTTCGTCG
GCGAGAAGTTGCATGGCGTGGTACGAAATACCGTTCCGCACGGCGCGTAC
GTTAATGTCGGCGCTGAGAAGGACGGGCTTGTACACTTGCGTAACATGTC
TGTGGACTTTGTTCATATGCCATCCGATCTCGTTCGCGAAGGAGACTCCG
TTACCGTCTGGGTCAAGTACGTCGACCCTGCGAGGAAGATACTGGGTCTT
ACCATGGTCAAGCCGCACTTGGGCTTTGAGTCCCGCATCAAAGTGGCTGA
AGTTGAGGTGGGCGGTCGCTACCGCGGCGTCGTGGAACGCGTCACCAACT
ATGGAGCCTATATCGATATCGGAGCCGAACGGCAGGCGTTTTTGCATGTC
ACCGCCATGTGGGGAGAACGTCAGAGGGATACATTGGACTACCTTCGACT
CGGACAGACCATTTGGGTACATGTGGCAGAAATAGACCTTCGGAAAAGTC
ATGTACGACTGTGGGCAAGGGCAGAAAACGGAGGCAGGTTGACGGACACC
AATCCAGTTTCACAAGTTTACTTGGGTCCAGAAGTTGTTGACGTTCAACC
CCGCGAAGCTCCGAGGCCCACCAGACGTAGCTGGCAGCCTGAAACTTTGG
AGCAGGAGGAGGACCATAGTGATCAGGACGATAGTGAGGAAGAAGAGCAA
GTCCAGAGTGCTGTGCTGGACCAAGTTGAGGACGCTTTCAATGATGAGGA
GTTTTCGTTTGCGGAAGAACTGTCTGATTGGACTGAAGAGAATAGAGGTC
CTAGCGAGAACAAGATTAGGGGCCTGGAAGAAATTGCTCACCTGTTTACG
GACGACACCGAGTTTGTCACAGAAGAAGATAGCTAA
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