Ggra8512.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8512.t1
Unique NameGgra8512.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length306
Homology
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BLAST of Ggra8512.t1 vs. uniprot
Match: A0A2V3IBM0 (Ubiquitinyl hydrolase 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBM0_9FLOR)

HSP 1 Score: 294 bits (753), Expect = 6.000e-96
Identity = 158/278 (56.83%), Postives = 191/278 (68.71%), Query Frame = 0 
Query:   34 DAEQPTDQQIVDEIGLLYHQSCASVYGAASALNAVLQGPYFDDDSLATLTGGTELDAYAMNMALQSFALTLQPIRSRRSSVPLHLERAFLCFHEQQWYAFRRFGVHWMHLRDTLQRPCNVEQLELCLSQQQADGCEIYVVCGKLPHCSADERSFWQVPFSWHSLTQQDAAAYMSANDAVCVNDVCATLPHCMCGGXXXXXXXXXXXXXXXXXEQHGVRD----DQEAFDRRFEEDMRAAIAASLQDLSARSGGAA---AMRIKRDVSSGVVRNGADGG 304
            DAEQP+DQQ+++EIGLL+HQ+  +++GAA+ALNAVLQGPYFD+ SL +LTGGTE DAY MNMALQSF + L+P RSRRS+ PL  E AFLCFHEQ+WYA RRFGVHWMH +DTL RP N+EQ+ELCLSQ Q+DGCE+YVV GKLP C  DERSFW VPFSW SL +       S+    C ++ C  +  CMC                   ++ G  D    D+  FDRRFEED+RAAIAAS+ D+    G      A+RIKRDVSSGV      GG
Sbjct:   46 DAEQPSDQQMLEEIGLLFHQNSPALHGAATALNAVLQGPYFDEHSLMSLTGGTESDAYTMNMALQSFDVRLEPARSRRSTQPLQSENAFLCFHEQRWYALRRFGVHWMHFKDTLDRPHNIEQVELCLSQLQSDGCEVYVVRGKLPACVGDERSFWHVPFSWDSLVR-------SSGMHGCGSEACQEVGLCMC-------------------DEDGSFDGGVGDEAVFDRRFEEDLRAAIAASVLDVGGGKGDXXXXXAVRIKRDVSSGVGSKRKGGG 297
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BLAST of Ggra8512.t1 vs. uniprot
Match: ATX3H (Ataxin-3 homolog n=9 Tax=Brassicaceae TaxID=3700 RepID=ATX3H_ARATH)

HSP 1 Score: 57.4 bits (137), Expect = 7.230e-6
Identity = 59/270 (21.85%), Postives = 97/270 (35.93%), Query Frame = 0 
Query:   48 GLLYHQSCASVYGAASALNAVLQGPYFDDDSLATLTG----------------------------------GTELDAYAMNMALQSFALTLQPIR---SRRSSVPLHLERAFLCFHEQQWYAFRRFGVHWMHLRDTLQRPCNVEQLELC--LSQQQADGCEIYVVCGKLPHCSADERSFWQVPFSWHSLTQQDAAAYMSANDAVCVNDVCATLPHCMCGGXXXXXXXXXXXXXXXXXEQHGVRDDQEAFDRRFEEDMRAAIAASLQDLSA 278
            G+LYH+   S   A   +N VLQGP+F +  LA +                                    G +     +  AL+ + L + P+    +  + +   LE AF+C     W+  R+    W +    L  P ++ +  L   L   +  G  I++V G  P          + P S  S        ++S  DA  +    ++       G                  Q   R++ +AF    ++D++AAIAASL D SA
Sbjct:    8 GMLYHEVQESNLCAVHCVNTVLQGPFFSEFDLAAVAADLDGKERQVMLEGAAVGGFAPGDFLAEESHNVSLGGDFSIQVLQKALEVWDLQVIPLNCPDAEPAQIDPELESAFICHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQ---------ECPMSSSSEASNSFGQWLSPEDAERIRKNTSS-------GSSARNKRSNDNVNQQRRNQALSREEVQAFSEMEDDDLKAAIAASLLDASA 261
The following BLAST results are available for this feature:
BLAST of Ggra8512.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IBM06.000e-9656.83Ubiquitinyl hydrolase 1 n=1 Tax=Gracilariopsis cho... [more]
ATX3H7.230e-621.85Ataxin-3 homolog n=9 Tax=Brassicaceae TaxID=3700 R... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.40coord: 60..187
e-value: 2.7E-15
score: 58.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
IPR006155Josephin domainPFAMPF02099Josephincoord: 93..173
e-value: 1.5E-5
score: 25.0
IPR033865Machado-Joseph disease proteinPANTHERPTHR14159ATAXIN-3-RELATEDcoord: 95..281

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:936571..937595 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8512.t1Ggra8512.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 936571..937595 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8512.t1 ID=Ggra8512.t1|Name=Ggra8512.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=306bp
MSHAPSAAADDDGAHSFAPQEPFYDDDDDDDDEDAEQPTDQQIVDEIGLL
YHQSCASVYGAASALNAVLQGPYFDDDSLATLTGGTELDAYAMNMALQSF
ALTLQPIRSRRSSVPLHLERAFLCFHEQQWYAFRRFGVHWMHLRDTLQRP
CNVEQLELCLSQQQADGCEIYVVCGKLPHCSADERSFWQVPFSWHSLTQQ
DAAAYMSANDAVCVNDVCATLPHCMCGGGGGGGVGVGVDDDDDDDEQHGV
RDDQEAFDRRFEEDMRAAIAASLQDLSARSGGAAAMRIKRDVSSGVVRNG
ADGGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006155Josephin
IPR033865Ataxin-3