Ggra8512.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8512.t1
Unique NameGgra8512.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:936571..937595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6183.Smp_122940.1
Preferred nameATXN3
PFAMsJosephin,SUIM_assoc,UIM
Max annot lvl33208|Metazoa
KEGG koko:K11863
KEGG Pathwayko04141,map04141
GOsGO:0000226,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006325,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007610,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010810,GO:0016020,GO:0016043,GO:0016234,GO:0016569,GO:0016570,GO:0016575,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0023052,GO:0030029,GO:0030036,GO:0030155,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031625,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033036,GO:0033554,GO:0034605,GO:0034641,GO:0034976,GO:0035520,GO:0035601,GO:0035640,GO:0035966,GO:0035967,GO:0036211,GO:0036459,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045103,GO:0045104,GO:0045732,GO:0045862,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0051788,GO:0060255,GO:0061136,GO:0061578,GO:0065007,GO:0070011,GO:0070013,GO:0070536,GO:0070646,GO:0070647,GO:0070887,GO:0070932,GO:0071108,GO:0071218,GO:0071310,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0098732,GO:0098916,GO:0099536,GO:0099537,GO:0101005,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1904327,GO:1904379,GO:1905897,GO:1905898,GO:1990380
Evalue2.61e-09
EggNOG OGsKOG2935@1|root,KOG2935@2759|Eukaryota,38FCI@33154|Opisthokonta,3BBAX@33208|Metazoa,3CZ57@33213|Bilateria
DescriptionAtaxin-3 isoform X1
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8512Ggra8512Gracilaria gracilis GNS1m malegenetig00000041_pilon 936571..937595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8512.t1Ggra8512.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 936571..937595 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8512.t1.stop1Ggra8512.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 936571..936573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8512.t1.CDS1Ggra8512.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 936571..937302 -
Ggra8512.t1.CDS2Ggra8512.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 937410..937595 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8512.t1.exon1Ggra8512.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 936571..937302 -
Ggra8512.t1.exon2Ggra8512.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 937410..937595 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8512.t1.intron1Ggra8512.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 937303..937409 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8512.t1.start1Ggra8512.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 937593..937595 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8512.t1 ID=Ggra8512.t1|Name=Ggra8512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp
MSHAPSAAADDDGAHSFAPQEPFYDDDDDDDDEDAEQPTDQQIVDEIGLL
YHQSCASVYGAASALNAVLQGPYFDDDSLATLTGGTELDAYAMNMALQSF
ALTLQPIRSRRSSVPLHLERAFLCFHEQQWYAFRRFGVHWMHLRDTLQRP
CNVEQLELCLSQQQADGCEIYVVCGKLPHCSADERSFWQVPFSWHSLTQQ
DAAAYMSANDAVCVNDVCATLPHCMCGGGGGGGVGVGVDDDDDDDEQHGV
RDDQEAFDRRFEEDMRAAIAASLQDLSARSGGAAAMRIKRDVSSGVVRNG
ADGGE*
back to top

spliced messenger RNA

>Ggra8512.t1 ID=Ggra8512.t1|Name=Ggra8512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000041_pilon:936571..937595- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCACGCGCCGTCCGCCGCCGCCGACGACGACGGCGCGCACTCGTT
CGCGCCTCAAGAGCCGTTCTACGACGATGACGACGACGACGACGACGAGG
ACGCCGAGCAGCCCACAGACCAACAAATAGTGGACGAGATAGGGCTGTTG
TACCACCAGTCATGTGCGTCTGTCTATGGCGCTGCGAGTGCGCTCAATGC
GGTGCTACAGGGGCCGTACTTTGACGACGACAGTTTAGCCACACTCACCG
GTGGCACCGAGCTTGACGCGTACGCCATGAACATGGCGTTGCAATCGTTC
GCGCTCACGTTGCAACCCATCCGATCGCGGCGTTCGTCCGTGCCACTGCA
CCTCGAGCGCGCATTCCTGTGCTTCCACGAGCAGCAGTGGTACGCCTTCC
GTCGCTTCGGCGTGCATTGGATGCATCTACGCGACACGCTGCAACGCCCA
TGTAACGTGGAGCAACTGGAGCTGTGTCTGTCGCAGCAGCAAGCGGACGG
CTGCGAAATCTACGTGGTGTGCGGCAAGCTGCCGCACTGCAGCGCGGACG
AACGCTCATTCTGGCAGGTGCCCTTCTCATGGCACTCTCTAACGCAACAA
GACGCGGCGGCATACATGTCAGCCAACGACGCCGTATGCGTAAACGACGT
CTGCGCCACGCTGCCGCACTGCATGTGCGGTGGGGGCGGCGGGGGCGGCG
TCGGCGTCGGCGTCGACGACGACGACGACGACGACGAGCAGCACGGCGTG
CGCGACGACCAGGAGGCGTTCGATCGTCGTTTTGAAGAGGATATGCGCGC
CGCCATCGCCGCCAGCCTGCAGGACTTGTCCGCTCGCAGCGGCGGCGCCG
CGGCGATGCGTATCAAACGTGACGTGTCGTCCGGCGTGGTGCGCAACGGC
GCCGACGGCGGCGAGTAG
back to top

protein sequence of Ggra8512.t1

>Ggra8512.t1 ID=Ggra8512.t1|Name=Ggra8512.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=306bp
MSHAPSAAADDDGAHSFAPQEPFYDDDDDDDDEDAEQPTDQQIVDEIGLL
YHQSCASVYGAASALNAVLQGPYFDDDSLATLTGGTELDAYAMNMALQSF
ALTLQPIRSRRSSVPLHLERAFLCFHEQQWYAFRRFGVHWMHLRDTLQRP
CNVEQLELCLSQQQADGCEIYVVCGKLPHCSADERSFWQVPFSWHSLTQQ
DAAAYMSANDAVCVNDVCATLPHCMCGGGGGGGVGVGVDDDDDDDEQHGV
RDDQEAFDRRFEEDMRAAIAASLQDLSARSGGAAAMRIKRDVSSGVVRNG
ADGGE*
back to top

mRNA from alignment at tig00000041_pilon:936571..937595-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8512.t1 ID=Ggra8512.t1|Name=Ggra8512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1025bp|location=Sequence derived from alignment at tig00000041_pilon:936571..937595- (Gracilaria gracilis GNS1m male)
ATGTCGCACGCGCCGTCCGCCGCCGCCGACGACGACGGCGCGCACTCGTT
CGCGCCTCAAGAGCCGTTCTACGACGATGACGACGACGACGACGACGAGG
ACGCCGAGCAGCCCACAGACCAACAAATAGTGGACGAGATAGGGCTGTTG
TACCACCAGTCATGTGCGTCTGTCTATGGCGCTGCGGTATGTGCACGCGC
TTCCGTTCCCGCCAGCCGCGCGCGAGAGAGCCGCGCGCAGGTTCGCCGCG
CGCCTCAGTGCTAACAAAACATCACGTGCATGTAACCTTTTAGAGTGCGC
TCAATGCGGTGCTACAGGGGCCGTACTTTGACGACGACAGTTTAGCCACA
CTCACCGGTGGCACCGAGCTTGACGCGTACGCCATGAACATGGCGTTGCA
ATCGTTCGCGCTCACGTTGCAACCCATCCGATCGCGGCGTTCGTCCGTGC
CACTGCACCTCGAGCGCGCATTCCTGTGCTTCCACGAGCAGCAGTGGTAC
GCCTTCCGTCGCTTCGGCGTGCATTGGATGCATCTACGCGACACGCTGCA
ACGCCCATGTAACGTGGAGCAACTGGAGCTGTGTCTGTCGCAGCAGCAAG
CGGACGGCTGCGAAATCTACGTGGTGTGCGGCAAGCTGCCGCACTGCAGC
GCGGACGAACGCTCATTCTGGCAGGTGCCCTTCTCATGGCACTCTCTAAC
GCAACAAGACGCGGCGGCATACATGTCAGCCAACGACGCCGTATGCGTAA
ACGACGTCTGCGCCACGCTGCCGCACTGCATGTGCGGTGGGGGCGGCGGG
GGCGGCGTCGGCGTCGGCGTCGACGACGACGACGACGACGACGAGCAGCA
CGGCGTGCGCGACGACCAGGAGGCGTTCGATCGTCGTTTTGAAGAGGATA
TGCGCGCCGCCATCGCCGCCAGCCTGCAGGACTTGTCCGCTCGCAGCGGC
GGCGCCGCGGCGATGCGTATCAAACGTGACGTGTCGTCCGGCGTGGTGCG
CAACGGCGCCGACGGCGGCGAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000041_pilon:936571..937595-

>Ggra8512.t1 ID=Ggra8512.t1|Name=Ggra8512.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00000041_pilon:936571..937595- (Gracilaria gracilis GNS1m male)
ATGTCGCACGCGCCGTCCGCCGCCGCCGACGACGACGGCGCGCACTCGTT
CGCGCCTCAAGAGCCGTTCTACGACGATGACGACGACGACGACGACGAGG
ACGCCGAGCAGCCCACAGACCAACAAATAGTGGACGAGATAGGGCTGTTG
TACCACCAGTCATGTGCGTCTGTCTATGGCGCTGCGAGTGCGCTCAATGC
GGTGCTACAGGGGCCGTACTTTGACGACGACAGTTTAGCCACACTCACCG
GTGGCACCGAGCTTGACGCGTACGCCATGAACATGGCGTTGCAATCGTTC
GCGCTCACGTTGCAACCCATCCGATCGCGGCGTTCGTCCGTGCCACTGCA
CCTCGAGCGCGCATTCCTGTGCTTCCACGAGCAGCAGTGGTACGCCTTCC
GTCGCTTCGGCGTGCATTGGATGCATCTACGCGACACGCTGCAACGCCCA
TGTAACGTGGAGCAACTGGAGCTGTGTCTGTCGCAGCAGCAAGCGGACGG
CTGCGAAATCTACGTGGTGTGCGGCAAGCTGCCGCACTGCAGCGCGGACG
AACGCTCATTCTGGCAGGTGCCCTTCTCATGGCACTCTCTAACGCAACAA
GACGCGGCGGCATACATGTCAGCCAACGACGCCGTATGCGTAAACGACGT
CTGCGCCACGCTGCCGCACTGCATGTGCGGTGGGGGCGGCGGGGGCGGCG
TCGGCGTCGGCGTCGACGACGACGACGACGACGACGAGCAGCACGGCGTG
CGCGACGACCAGGAGGCGTTCGATCGTCGTTTTGAAGAGGATATGCGCGC
CGCCATCGCCGCCAGCCTGCAGGACTTGTCCGCTCGCAGCGGCGGCGCCG
CGGCGATGCGTATCAAACGTGACGTGTCGTCCGGCGTGGTGCGCAACGGC
GCCGACGGCGGCGAGTAG
back to top