Ggra8489.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8489.t1
Unique NameGgra8489.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Homology
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BLAST of Ggra8489.t1 vs. uniprot
Match: A0A2V3II48 (GOLD domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II48_9FLOR)

HSP 1 Score: 269 bits (688), Expect = 1.130e-88
Identity = 134/199 (67.34%), Postives = 156/199 (78.39%), Query Frame = 0 
Query:   22 AVQFAMSFGEKKCFMEHVPRGSTLYVEIRTSSTADPLAIDVFIANERGVIVANKAAIADQKFTIPGSGQTHNNPALEGYRFCFLNQIHPHQVPIKGETRVSFNVRFGAGGKGVQRVELLKSDQIGTTNDKIRSLEDDLNRVLTQMDDLKEQEAVLSRYNSATSKHLVTLSSLTSIIIIAIGALQFDAVKVTLRQRKAIP 220
            +VQ +M FG +KCFME VPRG+T+Y E+ T S ++PL IDVFI NERG++VANKAAI D KFTI GS      P  E YR CFL+Q HPHQV   GETRVSFNVR G GG G QRVELLK D +  TNDKI +LE DLNR+L Q+DDLK QE +LSRYNSATS+HLVTLSSLTS+II+AIG +QFDAVK+ LR+RK IP
Sbjct:   22 SVQISMMFGARKCFMEQVPRGATIYAEVHTFSASNPLDIDVFITNERGIVVANKAAITDHKFTIQGSTNNQGKPPFETYRLCFLHQPHPHQVTTPGETRVSFNVRIGGGGVGAQRVELLKRDHMDLTNDKIHNLEQDLNRLLLQIDDLKHQEEMLSRYNSATSRHLVTLSSLTSVIIVAIGVMQFDAVKLALRKRKVIP 220
[Close]
BLAST of Ggra8489.t1 vs. uniprot
Match: A0A2V3IGM5 (Transmembrane emp24 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGM5_9FLOR)

HSP 1 Score: 88.6 bits (218), Expect = 6.690e-18
Identity = 53/198 (26.77%), Postives = 99/198 (50.00%), Query Frame = 0 
Query:   22 AVQFAMSFGEKKCFMEHVPRGSTLYVEIRTSSTADPLAIDVFIANERGVIVANKAAIADQKFTIP-GSGQTHNNPALEGYRFCFLNQIHPHQVPIKGETR-VSFNVRFGAGGKGVQRVELLKSDQIGTTNDKIRSLEDDLNRVLTQMDDLKEQEAVLSRYNSATSKHLVTLSSLTSIIIIAIGALQFDAVKVTLRQRK 217
            ++ F + +G++KCF E +P  S     I  +S    +++D+F+++ RG +  +K  +   KF+   G  QTH    ++ YRFC +NQ+HPH     G  R V+ +V             L K +      +    +   ++ ++ +MD+L+E+EA L+  N  T+  +  LS L  +  +A G   F ++K   +++K
Sbjct:   34 SLTFELPYGQRKCFTEQLPPRSICRGTIHVASGKGEMSLDLFVSDMRGTVQFHKQDVNTVKFSFKTGLFQTHT---VQDYRFCVINQVHPHSHSTPGAVRRVTLDVDIVKDKDDESTSRLAKQEHADKIYNDFMMVSQSVDSIIEKMDELREKEANLTNINKQTTTTIFRLSMLACLFTVAAGVANFLSLKTFFKRKK 228
The following BLAST results are available for this feature:
BLAST of Ggra8489.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3II481.130e-8867.34GOLD domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IGM56.690e-1826.77Transmembrane emp24 domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 152..172
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 207..220
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..186
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 187..206
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availableTMHMMTMhelixcoord: 187..209
NoneNo IPR availableTMHMMTMhelixcoord: 4..23
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 22..214
e-value: 6.0E-12
score: 55.7
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 23..212
e-value: 3.5E-20
score: 72.7
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 32..127
score: 9.668098
IPR015720Transmembrane emp24 domain-containing proteinPANTHERPTHR22811TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEINcoord: 11..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:865582..866244 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8489.t1Ggra8489.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 865582..866244 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8489.t1 ID=Ggra8489.t1|Name=Ggra8489.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MGRSYGILVFFALLVAIDFVRAVQFAMSFGEKKCFMEHVPRGSTLYVEIR
TSSTADPLAIDVFIANERGVIVANKAAIADQKFTIPGSGQTHNNPALEGY
RFCFLNQIHPHQVPIKGETRVSFNVRFGAGGKGVQRVELLKSDQIGTTND
KIRSLEDDLNRVLTQMDDLKEQEAVLSRYNSATSKHLVTLSSLTSIIIIA
IGALQFDAVKVTLRQRKAIP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
IPR015720Emp24-like