Ggra8488.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8488.t1
Unique NameGgra8488.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length142
Homology
BLAST of Ggra8488.t1 vs. uniprot
Match: A0A2V3II74 (Succinate dehydrogenase assembly factor 2, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II74_9FLOR)

HSP 1 Score: 182 bits (461), Expect = 1.200e-56
Identity = 83/125 (66.40%), Postives = 103/125 (82.40%), Query Frame = 0
Query:   17 FSKTSFTVRSLATGVKQWQAEHLRAPQGGAQIPDHVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLDADTPDVLKWVLGQKDPPVQFQNEIMDSLREYALGDGHVNER 141
            F + S  +RSL++  KQWQA +L+APQ GA IP  ++ RQRRIIYRSKQRGWLELDILFGNWAAKHVP ++++  + M E LL+A+TPDVLKWVLGQ +PP+ F+NEI+ SLREYA GDGHVN+R
Sbjct:   14 FQRASINLRSLSSTDKQWQAAYLKAPQAGAPIPRDLTARQRRIIYRSKQRGWLELDILFGNWAAKHVPGISDERHVEMVERLLEAETPDVLKWVLGQSEPPLHFRNEILASLREYATGDGHVNDR 138          
BLAST of Ggra8488.t1 vs. uniprot
Match: A0A5J4YQH3 (Succinate dehydrogenase assembly factor 2, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQH3_PORPP)

HSP 1 Score: 103 bits (256), Expect = 2.710e-25
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 0
Query:   29 TGVKQWQAEHLRAPQG----GAQIPDHVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEK-------------LTMTEDLLDADTPDVLKWVLGQKDPPVQFQNE-IMDSLREYALGDGHVNER 141
            TG  +W  +HL  PQG    G      +S RQ+R +YRSKQRGWLE+D++ G W + H+  + E +K             +   E +LDA+TPD+ KWV GQ++PP       +  S++E+A G G+++ R
Sbjct:   26 TGKPEWLKDHLANPQGAPVHGLGAMSELSSRQKRALYRSKQRGWLEMDVILGRWTSLHMQRLLESQKPGAPPSVLGDEQGMAQLERILDAETPDIFKWVTGQQEPPADVGGSTVFQSIQEFAFGAGNISTR 156          
BLAST of Ggra8488.t1 vs. uniprot
Match: A0A7S2AGR3 (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AGR3_9DINO)

HSP 1 Score: 84.3 bits (207), Expect = 4.930e-18
Identity = 39/96 (40.62%), Postives = 64/96 (66.67%), Query Frame = 0
Query:   41 APQGGAQIPDHVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLDADTPDVLKWVLGQKDPPVQFQ-NEIMDSLREYALGD 135
            A + GA++      R++R+++R+K RGWLELD+L G +AAKH+P  +E EKL + E++LD + PD+ KW  GQ + P + + NE+M  + ++   D
Sbjct:   51 AAEAGAEL----EKRKKRLLWRAKSRGWLELDVLMGTFAAKHIPDFDE-EKLDLLEEVLDLENPDLFKWFTGQVEVPDEIKGNEVMSMMLDFVKSD 141          
BLAST of Ggra8488.t1 vs. uniprot
Match: A0A7S2D3N9 (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3N9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.050e-18
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0
Query:   45 GAQIPDHVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLDADTPDVLKWVLGQKDPPVQFQNEIMDSLREYAL 133
            G +  D   +R++RIIYRSKQRGWLE+D+L G WA KHVP +  +E L   E +L+ +T D+  ++ G++ PP +  N IM  L+++ +
Sbjct:   78 GTRSIDPDGIRRKRIIYRSKQRGWLEVDLLLGTWAVKHVPDLTVEE-LDQYETILNRETMDIFNYITGKEAPPPEIDNAIMVQLKKWTI 165          
BLAST of Ggra8488.t1 vs. uniprot
Match: A0A2P4XKW9 (Succinate dehydrogenase subunit Emi5 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XKW9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.010e-17
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 0
Query:   41 APQGGAQIPDHVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLDADTPDVLKWVLGQKDPPVQFQNEIMDSLREYAL 133
            A  G  Q+ D     ++RIIYRSKQRGWLE+D+L G WA+++V  +++DE L   ED+L+ +T D+  ++ G+ D P Q    +M  L+EY L
Sbjct:   69 ASHGEHQV-DSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLSKDE-LKQYEDILNEETIDIFNYISGKSDVPEQLDTPMMKRLQEYCL 159          
BLAST of Ggra8488.t1 vs. uniprot
Match: G4ZRU4 (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZRU4_PHYSP)

HSP 1 Score: 80.1 bits (196), Expect = 1.510e-16
Identity = 38/99 (38.38%), Postives = 63/99 (63.64%), Query Frame = 0
Query:   35 QAEHLRAPQGGAQIPDHVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLDADTPDVLKWVLGQKDPPVQFQNEIMDSLREYAL 133
            +A+ LR  QG  ++ D     ++R+IYRSKQRGWLE+D+L G WA+++V  ++ DE L   ED+L+ +T D+  ++ G+   P +    +M  L++Y L
Sbjct:   17 RAQALRLLQGERRV-DANEANRKRVIYRSKQRGWLEVDLLLGRWASQNVMALSSDE-LRQYEDILNEETIDIFNYISGKSPVPARLDTPMMKRLQDYCL 113          
BLAST of Ggra8488.t1 vs. uniprot
Match: A0A812IWP6 (SDHAF2 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IWP6_SYMPI)

HSP 1 Score: 80.5 bits (197), Expect = 1.510e-16
Identity = 43/113 (38.05%), Postives = 67/113 (59.29%), Query Frame = 0
Query:   33 QWQAEHLRAPQG-GAQIPDHVSM--RQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLDADTPDVLKWVLGQKDPPVQF--QNEIMDSLREYALGDGHVNE 140
            +WQA HL   +G  A   D + +  R++R+ +R+K RGWLELD+L G +  KHV   +E +KL + E++L+ + PD+ KW   Q   P +   +NE+M  + EY   D H +E
Sbjct:   34 RWQAFHLAPTRGFNAAAADDLELLKRRKRLTWRAKSRGWLELDVLMGTFVEKHVAEFDE-QKLDLLEEVLELENPDLFKWFTKQVPVPEELLQENEVMQLMMEYVKSD-HTSE 144          
BLAST of Ggra8488.t1 vs. uniprot
Match: A0A329S672 (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S672_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.230e-16
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 0
Query:   45 GAQIPDHVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLDADTPDVLKWVLGQKDPPVQFQNEIMDSLREYAL 133
            G  + D     ++RIIYRSKQRGWLE+D+L G WA+++V  ++ DE L   ED+L+ +T D+  ++ G+ D P +    +M  L+EY L
Sbjct:   72 GDHLVDLEEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLSSDE-LQQYEDILNEETIDIFNYISGKSDVPQRLDTPMMKRLQEYCL 159          
BLAST of Ggra8488.t1 vs. uniprot
Match: A0A7S3RIM4 (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RIM4_9SPIT)

HSP 1 Score: 79.3 bits (194), Expect = 2.720e-16
Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 0
Query:   31 VKQWQAEHLRAPQGGAQIPDHVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLDADTPDVLKWVLGQKDPPVQF-QNEIMDSLREYALGD 135
            ++QWQ   +R+    A +   +  R++R+++R++ RGWLELD+L G +A KH+    +DEKL +  ++L+ + PD+ KW  GQ + P +   NE+M  L EY   D
Sbjct:   23 LRQWQ---IRSYAAEASV--EIVTRRKRLLWRARSRGWLELDVLMGTFADKHIHDF-DDEKLDLLHEVLELENPDLFKWFTGQVEVPEEIASNEVMAMLMEYVKSD 122          
BLAST of Ggra8488.t1 vs. uniprot
Match: A0A7S1W8N1 (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1W8N1_ALECA)

HSP 1 Score: 78.2 bits (191), Expect = 4.590e-16
Identity = 38/96 (39.58%), Postives = 61/96 (63.54%), Query Frame = 0
Query:   41 APQGGAQIPDHVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLDADTPDVLKWVLGQKDPPVQFQ-NEIMDSLREYALGD 135
            A + GA++      R++R+++R+K RGWLELD+L G + AKH+   +E EKL + E++LD + PD+ KW  GQ   P + + NE+M  + E+   D
Sbjct:   12 ASEAGAEM----EKRRKRLLWRAKARGWLELDVLMGTFVAKHISGFDE-EKLDLLEEVLDLENPDLFKWFTGQVAVPEEIKGNEVMAMMLEFVKSD 102          
The following BLAST results are available for this feature:
BLAST of Ggra8488.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3II741.200e-5666.40Succinate dehydrogenase assembly factor 2, mitocho... [more]
A0A5J4YQH32.710e-2537.40Succinate dehydrogenase assembly factor 2, mitocho... [more]
A0A7S2AGR34.930e-1840.63Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S2D3N96.050e-1842.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2P4XKW98.010e-1743.01Succinate dehydrogenase subunit Emi5 n=1 Tax=Phyto... [more]
G4ZRU41.510e-1638.38Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A812IWP61.510e-1638.05SDHAF2 protein n=1 Tax=Symbiodinium pilosum TaxID=... [more]
A0A329S6722.230e-1641.57Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A7S3RIM42.720e-1636.79Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S1W8N14.590e-1639.58Hypothetical protein n=1 Tax=Alexandrium catenella... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005631Flavinator of succinate dehydrogenasePFAMPF03937Sdh5coord: 57..131
e-value: 4.8E-18
score: 64.9
IPR036714Flavinator of succinate dehydrogenase superfamilyGENE3D1.10.150.250Flavinator of succinate dehydrogenasecoord: 52..136
e-value: 1.4E-20
score: 75.1
IPR036714Flavinator of succinate dehydrogenase superfamilySUPERFAMILY109910YgfY-likecoord: 52..130
NoneNo IPR availablePANTHERPTHR12469:SF2SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 2, MITOCHONDRIALcoord: 47..132
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 47..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:864421..864846 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8488.t1Ggra8488.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 864421..864846 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8488.t1 ID=Ggra8488.t1|Name=Ggra8488.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=142bp
MQRLSAIQNCCSHLKIFSKTSFTVRSLATGVKQWQAEHLRAPQGGAQIPD
HVSMRQRRIIYRSKQRGWLELDILFGNWAAKHVPLMNEDEKLTMTEDLLD
ADTPDVLKWVLGQKDPPVQFQNEIMDSLREYALGDGHVNER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005631SDH
IPR036714SDH_sf