Ggra8486.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8486.t1
Unique NameGgra8486.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Homology
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BLAST of Ggra8486.t1 vs. uniprot
Match: A0A2V3IPF1 (Mediator of RNA polymerase II transcription subunit 18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPF1_9FLOR)

HSP 1 Score: 232 bits (591), Expect = 8.720e-74
Identity = 105/194 (54.12%), Postives = 146/194 (75.26%), Query Frame = 0 
Query:   14 DASAVTRTLIRGTLPLINAKPLIFLVKCLCPEKGQLGDFREWDRVYNSTPDAKAPKASVRLRTHLPPSPNAMRHTLMYFGAKDRRVPAPCESRTVSLVDIGPEADAFLSLLGCVFAFEYMRRGLRFRTRNGIIIDIFTIEKFEKRHDIASTTPLVPPENNHAVIELISEQTASPEELQAFVHHLSPYIHIHSPP 207
            D  +VTRT+IRGT PL +A+P++FL+KCLC + GQ GDF EWDRVY+ +P+   PK S+ LR H  P+   +  +L Y G  +RRV APCE R+++ V IG EADA LSLLGC F +EYMR+GLR RTRNGI+I+IFTIE+F+++HD+ ST PL+  +  +A+IELIS+  ASP+EL+  + H+SP++ +H+ P
Sbjct:   28 DQKSVTRTVIRGTFPLSSAEPIVFLIKCLCSQSGQFGDFNEWDRVYSMSPETSTPKNSILLRNHSVPNYPDLPVSLFYLGRPERRVTAPCERRSITAVSIGREADAVLSLLGCTFVYEYMRKGLRCRTRNGIVIEIFTIERFQEKHDVHSTIPLLSDDEKYAIIELISDTGASPQELEDLMRHISPHVSLHTHP 221
The following BLAST results are available for this feature:
BLAST of Ggra8486.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IPF18.720e-7454.12Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.320.10coord: 33..205
e-value: 2.3E-12
score: 49.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..227

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:861634..862317 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8486.t1Ggra8486.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 861634..862317 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8486.t1 ID=Ggra8486.t1|Name=Ggra8486.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MIGAVAPAPDRHDDASAVTRTLIRGTLPLINAKPLIFLVKCLCPEKGQLG
DFREWDRVYNSTPDAKAPKASVRLRTHLPPSPNAMRHTLMYFGAKDRRVP
APCESRTVSLVDIGPEADAFLSLLGCVFAFEYMRRGLRFRTRNGIIIDIF
TIEKFEKRHDIASTTPLVPPENNHAVIELISEQTASPEELQAFVHHLSPY
IHIHSPPQPKLSPRRRLSPQPRPVSRP*
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