Ggra8462.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8462.t1
Unique NameGgra8462.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Homology
BLAST of Ggra8462.t1 vs. uniprot
Match: A0A2V3ITA7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITA7_9FLOR)

HSP 1 Score: 186 bits (472), Expect = 1.170e-58
Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 0
Query:    1 MSRL----QPAQSFSNNSYREDDIPAELYDTSTSRYSDAQLFRRSAAGEPRTTFPWRTAFVALFLFGFGITFLLLGLLHFRDVDQATSIAFISVGCIAFLPGAYVTYNLIQALRGARGFHLSQFAHWDDYRW 128
            MSRL    QP     ++ YR D IP++LYDTSTSRYSDAQLFR SAAG  RT FPWRT FV LFLFGFGI+FLL G+LHF D DQ TSI+FI+VG IAFLPG Y+ +NLIQ  RGA GFHLSQFAHWDDYRW
Sbjct:    1 MSRLSTTSQPESQ--HDPYRPDAIPSDLYDTSTSRYSDAQLFRTSAAGHTRTIFPWRTIFVTLFLFGFGISFLLTGILHFWDRDQPTSISFIAVGSIAFLPGTYLAFNLIQTYRGAPGFHLSQFAHWDDYRW 130          
BLAST of Ggra8462.t1 vs. uniprot
Match: A0A1X6PFR1 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFR1_PORUM)

HSP 1 Score: 113 bits (282), Expect = 9.670e-30
Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 0
Query:    1 MSRLQPAQSFSNNSYREDDIPAELYDTSTSRYSDAQLFRRSA--AGEP----RTTFPWRTAFVALFLFGFGITFLLLGLLHFRDVDQATSIAFISVGCIAFLPGAYVTYNLIQALRGARGFHLSQFAHWDDYRW 128
            MS L+PA++       +D+  A+ Y     R+S  + F   A  AG P    R   PWRT  VAL LFG G+TFLLLG LHF D D+ T +AF+ +G + FLPG+Y TYNL  A RG  GFH  Q A +DD+RW
Sbjct:    6 MSDLRPARA-------DDEPSADQYVVDGRRFSGTEHFGAGAGDAGGPLPGGRARLPWRTMVVALLLFGIGLTFLLLGGLHFWDRDRDTGVAFLVIGSLCFLPGSYATYNLWHAWRGTPGFHFHQMAEFDDFRW 132          
BLAST of Ggra8462.t1 vs. uniprot
Match: R7Q6F0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6F0_CHOCR)

HSP 1 Score: 90.1 bits (222), Expect = 6.180e-20
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0
Query:   78 DVDQATSIAFISVGCIAFLPGAYVTYNLIQALRGARGFHLSQFAHWDDYRW 128
            D D+ TSIAFI +GC+ FLPG YV +NL+Q LRGA GFHLS FAHWDDYRW
Sbjct:  151 DKDRGTSIAFICLGCVTFLPGVYVVFNLVQVLRGAPGFHLSDFAHWDDYRW 201          
The following BLAST results are available for this feature:
BLAST of Ggra8462.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ITA71.170e-5871.21Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6PFR19.670e-3047.01Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7Q6F06.180e-2072.55Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008590Transmembrane protein 230/134PFAMPF05915TMEM_230_134coord: 21..119
e-value: 8.1E-11
score: 42.1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 104..128
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 77..81
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..54
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 82..103
NoneNo IPR availableTMHMMTMhelixcoord: 55..74
NoneNo IPR availableTMHMMTMhelixcoord: 84..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:778038..778596 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8462.t1Ggra8462.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 778038..778596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8462.t1 ID=Ggra8462.t1|Name=Ggra8462.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MSRLQPAQSFSNNSYREDDIPAELYDTSTSRYSDAQLFRRSAAGEPRTTF
PWRTAFVALFLFGFGITFLLLGLLHFRDVDQATSIAFISVGCIAFLPGAY
VTYNLIQALRGARGFHLSQFAHWDDYRW*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008590TMEM_230/134