Ggra8462.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8462.t1
Unique NameGgra8462.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:778038..778596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra75784
PFAMsDUF872
Max annot lvl4776|Peronosporales
Evalue1.75e-07
EggNOG OGs2CXP8@1|root,2S4M2@2759|Eukaryota,3QG0H@4776|Peronosporales
DescriptionEukaryotic protein of unknown function (DUF872)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8462Ggra8462Gracilaria gracilis GNS1m malegenetig00000041_pilon 778038..778596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8462.t1Ggra8462.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 778038..778596 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8462.t1.start1Ggra8462.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 778038..778040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8462.t1.CDS1Ggra8462.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 778038..778088 +
Ggra8462.t1.CDS2Ggra8462.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 778150..778456 +
Ggra8462.t1.CDS3Ggra8462.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000041_pilon 778568..778596 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8462.t1.exon1Ggra8462.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 778038..778088 +
Ggra8462.t1.exon2Ggra8462.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 778150..778456 +
Ggra8462.t1.exon3Ggra8462.t1.exon3Gracilaria gracilis GNS1m maleexontig00000041_pilon 778568..778596 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8462.t1.intron1Ggra8462.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 778089..778149 +
Ggra8462.t1.intron2Ggra8462.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000041_pilon 778457..778567 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8462.t1.stop1Ggra8462.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 778594..778596 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8462.t1 ID=Ggra8462.t1|Name=Ggra8462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=129bp
MSRLQPAQSFSNNSYREDDIPAELYDTSTSRYSDAQLFRRSAAGEPRTTF
PWRTAFVALFLFGFGITFLLLGLLHFRDVDQATSIAFISVGCIAFLPGAY
VTYNLIQALRGARGFHLSQFAHWDDYRW*
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spliced messenger RNA

>Ggra8462.t1 ID=Ggra8462.t1|Name=Ggra8462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00000041_pilon:778038..778596+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCCTACAACCAGCCCAGTCCTTCTCCAACAACTCCTACAGAGA
GGATGACATTCCAGCCGAACTATACGACACCTCAACAAGCCGGTACAGCG
ATGCGCAACTCTTTCGCCGAAGCGCTGCGGGAGAACCAAGAACAACATTT
CCGTGGAGAACTGCTTTCGTAGCGTTGTTTCTGTTCGGATTCGGCATTAC
GTTCTTGCTACTCGGTCTGCTTCATTTTCGTGATGTGGATCAAGCAACTT
CTATTGCCTTCATTTCGGTTGGGTGCATTGCGTTTCTTCCTGGCGCCTAT
GTGACTTATAACTTGATACAAGCGTTGCGCGGAGCTCGTGGCTTTCATCT
ATCGCAATTCGCTCACTGGGATGACTACAGATGGTGA
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protein sequence of Ggra8462.t1

>Ggra8462.t1 ID=Ggra8462.t1|Name=Ggra8462.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MSRLQPAQSFSNNSYREDDIPAELYDTSTSRYSDAQLFRRSAAGEPRTTF
PWRTAFVALFLFGFGITFLLLGLLHFRDVDQATSIAFISVGCIAFLPGAY
VTYNLIQALRGARGFHLSQFAHWDDYRW*
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mRNA from alignment at tig00000041_pilon:778038..778596+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8462.t1 ID=Ggra8462.t1|Name=Ggra8462.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=559bp|location=Sequence derived from alignment at tig00000041_pilon:778038..778596+ (Gracilaria gracilis GNS1m male)
ATGTCGCGCCTACAACCAGCCCAGTCCTTCTCCAACAACTCCTACAGAGA
GGTTCGTGTATCATTACCCCGCCAACCGCCCGTGCAAACCGCTATCTGAC
CCCCAATACCAGGATGACATTCCAGCCGAACTATACGACACCTCAACAAG
CCGGTACAGCGATGCGCAACTCTTTCGCCGAAGCGCTGCGGGAGAACCAA
GAACAACATTTCCGTGGAGAACTGCTTTCGTAGCGTTGTTTCTGTTCGGA
TTCGGCATTACGTTCTTGCTACTCGGTCTGCTTCATTTTCGTGATGTGGA
TCAAGCAACTTCTATTGCCTTCATTTCGGTTGGGTGCATTGCGTTTCTTC
CTGGCGCCTATGTGACTTATAACTTGATACAAGCGTTGCGCGGAGCTCGT
GGCTTTCATCTATCGCAATGTGCGTTTGCTTCCCTATGCACCTCTTCTGG
CTTTGCTGCCCATGGCATGCGTGTGTTTCTTGTACTAACATTCTTTGTTT
CTTTTTGTTGTCTGCTACACTGCTGTTCAGTCGCTCACTGGGATGACTAC
AGATGGTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:778038..778596+

>Ggra8462.t1 ID=Ggra8462.t1|Name=Ggra8462.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00000041_pilon:778038..778596+ (Gracilaria gracilis GNS1m male)
ATGTCGCGCCTACAACCAGCCCAGTCCTTCTCCAACAACTCCTACAGAGA
GGATGACATTCCAGCCGAACTATACGACACCTCAACAAGCCGGTACAGCG
ATGCGCAACTCTTTCGCCGAAGCGCTGCGGGAGAACCAAGAACAACATTT
CCGTGGAGAACTGCTTTCGTAGCGTTGTTTCTGTTCGGATTCGGCATTAC
GTTCTTGCTACTCGGTCTGCTTCATTTTCGTGATGTGGATCAAGCAACTT
CTATTGCCTTCATTTCGGTTGGGTGCATTGCGTTTCTTCCTGGCGCCTAT
GTGACTTATAACTTGATACAAGCGTTGCGCGGAGCTCGTGGCTTTCATCT
ATCGCAATTCGCTCACTGGGATGACTACAGATGGTGA
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