Ggra8458.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8458.t2
Unique NameGgra8458.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length305
Homology
BLAST of Ggra8458.t2 vs. uniprot
Match: A0A2V3IC87 (Peroxisome biogenesis factor 10 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IC87_9FLOR)

HSP 1 Score: 112 bits (280), Expect = 7.510e-26
Identity = 64/131 (48.85%), Postives = 74/131 (56.49%), Query Frame = 0
Query:  158 RAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSN 288
            RAHLALFY+R  Y    RR   VRY+AT+    Q  LLP LG ++  MLL D C+AL    +R R  G       HA+G     +     K+       CILCLGA R  TLT CGHVFCW CICHWCSSN
Sbjct:  106 RAHLALFYLRGRYATFVRRLVSVRYLATSHVTIQDALLPFLGTILLFMLLVDICSALCKLFKRFRVGG--VPQVAHALGLTSPPED----KELSDSHTKCILCLGAARHPTLTSCGHVFCWQCICHWCSSN 230          
BLAST of Ggra8458.t2 vs. uniprot
Match: peroxisome biogenesis factor 10-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D63733 (peroxisome biogenesis factor 10-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D63733)

HSP 1 Score: 79.0 bits (193), Expect = 3.270e-13
Identity = 81/281 (28.83%), Postives = 130/281 (46.26%), Query Frame = 0
Query:   16 DVLRAHSKDDEYMALLRADVSRLLRLTLSARQRQRHAAQQPRALRFAAGALTRVLYQLWTTTAPLYATPGEQHAGVAPV-AGRPPQPLTRRRALLLALLQSSSARLLSVALAAVCGCAFRAXXXXXXXXRTRERILR-------ALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSN 288
            +++R++ KD  Y   LR+ ++ + +    AR   R   +           L  VLY   TT A  Y T GE++  +  V   R   P  +RR L L LL + S  LL   LA +                 R+RI +       A+ +LQR H+ALFY+R V+   A+R   + Y+    +    ++ P+  + +G + ++    +LL +  ++R  G   A        +D+   ++ G   V PR  C LCL   R++T T CGH+FCW+CI  WCS+ 
Sbjct:   10 EIIRSNQKDQFYANFLRSSLADICQSFAGARVWARWRKELD--------VLGDVLYFGLTTIAG-YQTLGEEYVNILQVDPTRRAVPSAKRR-LALVLLYACSPYLLDRLLAYIPKLLESERARAGLSPEVRQRIAQCVPILRQAVMILQRTHIALFYLRGVFYHVAKRMTGIHYLMVRRNLSASSMRPSFHL-LGWLSVTQLTVSLLYSLYKMRR-GTVDAEESDTSVTEDERASEEGG--IVEPRLRCALCLERRRNSTATPCGHLFCWHCITEWCSTK 276          
BLAST of Ggra8458.t2 vs. uniprot
Match: peroxisome biogenesis factor 10-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014550812 (peroxisome biogenesis factor 10-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014550812)

HSP 1 Score: 76.3 bits (186), Expect = 2.930e-12
Identity = 75/280 (26.79%), Postives = 122/280 (43.57%), Query Frame = 0
Query:   16 DVLRAHSKDDEYMALLRADVSRLLRLTLSARQRQRHAAQQPRALRFAAGALTRVLYQLWTTTAPLYATPGEQHAGVAPVAGRPPQPLTRRRALLLALLQSSSARLLSVALAAVCGCAFRAXXXXXXXXRTRERILR-------ALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSN 288
            +++R++ KD  Y+  LR  ++ + +     R   R   +           L  VLY   TT A  Y T GE++  +  V          +R L L L+ S S  LL   LA +                 R+RI +       A+ ++QR H+ALFY+R V+   A+R   ++Y+      G  ++ P+  V+  + L+    A+LL +  +++A               D     +DG+    P   C LCL   R++T T CGH+FCW CI  WC++ 
Sbjct:    9 EIIRSNQKDQFYVDFLRNSLADICQSLAGPRVWARWRKELD--------VLGEVLYFGLTTVAG-YQTLGEEYVSILQVDHAQRAVPNIKRRLALVLMYSCSPYLLDRLLAYIPKLLETDRAAERISPERRQRISKMIPVLRHAVAIIQRTHMALFYLRGVFYHLAKRWTGIQYLLVRRGPGYGSMKPSFKVLAWLSLI-QLTASLLHSLYKIKAGQGTVTTGTETTSESDLKRVVEDGR-GTNPALRCPLCLETRRNSTATPCGHLFCWECITEWCATK 277          
BLAST of Ggra8458.t2 vs. uniprot
Match: A0A109FJR4 (RING-type domain-containing protein (Fragment) n=1 Tax=Rhodotorula sp. JG-1b TaxID=1305733 RepID=A0A109FJR4_9BASI)

HSP 1 Score: 72.0 bits (175), Expect = 6.330e-11
Identity = 45/129 (34.88%), Postives = 60/129 (46.51%), Query Frame = 0
Query:  156 LQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHW 284
            L+  HLA+FY+   Y   ++RA  VR+V    +   P+    LGV+M V + + A  A     +R +            V   DD D      D       C LCLG +RDAT T CGHVFCW C+  W
Sbjct:  121 LRSVHLAVFYLFGRYYNLSKRATGVRFVRLITTSPAPSSYEVLGVLMVVQIAASAAEA----EQRKKRFMIDGLPLQRVVFDPDDPDQAAPYPDEEDAERRCTLCLGTMRDATATECGHVFCWECVVGW 245          
BLAST of Ggra8458.t2 vs. uniprot
Match: K1R1W6 (Peroxisome biogenesis factor 10 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1R1W6_CRAGI)

HSP 1 Score: 64.7 bits (156), Expect = 2.120e-8
Identity = 51/166 (30.72%), Postives = 72/166 (43.37%), Query Frame = 0
Query:  145 TRERILRALRVLQRA-------HLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAM---------HAVGADDDHDHDDD-----GKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNL 289
            TRE IL +L VLQ+A       HLALFY+R V+   A+R   V Y+  + S  + +                      + ++  RA+GW +   +         H+  +        D       DA+  +  C LCL A R  T T CGH+FCW CI  WCS+ L
Sbjct:  101 TREFILNSLPVLQQALSLLQRFHLALFYLRGVFYHIAKRLTNVSYIKFSVSPTEGS----------------------SVQQSFRALGWLSLAQLGFSVLQTLYHSYRSSGTSSPQKDISTRTSNDAIDRK--CCLCLEARRSPTATPCGHLFCWQCIYEWCSTKL 242          
BLAST of Ggra8458.t2 vs. uniprot
Match: A0A836CLL0 (Peroxisome biogenesis factor 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.370e-8
Identity = 51/151 (33.77%), Postives = 63/151 (41.72%), Query Frame = 0
Query:  151 RALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAV-------------GWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSN 288
            R LR L   HLALF++   Y  AA RAARVR +     D        LGV+M      +  A    A R+L  +               +A LA   V      D      +A   R  C LC+G       TLCGH+FCW CI  WC +N
Sbjct:  206 RVLRWLGAFHLALFFLNGRYANAAMRAARVRLMYNRAQDAPLPRYTILGVLMLARFGFEFGAQ---AARKLHGIIFSDGDGSGGXXXXXKANLASQRVPGLSGSD-----TEAAARRHRCALCMGPREHTAATLCGHLFCWECIVGWCETN 348          
BLAST of Ggra8458.t2 vs. uniprot
Match: A0A0B6XY22 (RING-type domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6XY22_9EUPU)

HSP 1 Score: 63.5 bits (153), Expect = 6.870e-8
Identity = 76/291 (26.12%), Postives = 123/291 (42.27%), Query Frame = 0
Query:   12 AAAGDVLRAHSKDDEYMALLRADVSRLLRLTLSAR---QRQRHAAQQPRALRFAAGALTRVLYQLWTTTAPLYATPGEQHAGVAPV-AGRPPQPLTRRRALLLALLQSSSARLLSVALAAVCGCAFRAXXXXXXXXRTRERIL-------RALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLL---PALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSN 288
            A   +++R+H KDD +++LLR+  + + +     R   Q ++H              +T  L     TT     T GE++  +          P   RRAL+LAL Q  +  ++   L  +     +          TRE +L       +A+ +L R HL +FY+  ++   ++R A + Y+     +   + L     LG +    L S     L+     LR    R   + H   +  D + + D    V P   C LCLG  R +TLT CGH++CW+CI  WC S 
Sbjct:    5 AGTAEIIRSHQKDDNFLSLLRSSFADICQRIAGPRVWIQWRKHLD------------VTADLAYFCLTTLSDLQTVGEEYVNIIQTDKSLRTLPSKWRRALMLAL-QVCAPYIVQATLDKL-ERHVQDSSPSSIRPTTREAVLSILPLIRKAVTILHRIHLMMFYINGIFYHLSKRVAGIHYIQYMSRERDHSSLRPFQILGYLSVFQLFSSFVINLVLLVTALR----RQRQSSHVSSSLSDVETETDHV-RVMPNEKCPLCLGRRRRSTLTPCGHLYCWSCIHEWCLSK 276          
BLAST of Ggra8458.t2 vs. uniprot
Match: A0A6P7N436 (peroxisome biogenesis factor 10 n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7N436_BETSP)

HSP 1 Score: 63.2 bits (152), Expect = 1.080e-7
Identity = 47/141 (33.33%), Postives = 64/141 (45.39%), Query Frame = 0
Query:  153 LRVLQRAHLALFYVRAVYGGAARRAARVRYVAT-AESDGQPTLLPA---LGVVMGVMLLSDACAALLAARRRLRA-VGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSN 288
            L +LQR H+ALFY+   +   +RR A + Y+     + G  T+      LG V  + LL   C  L   R+R RA   W+    +                   P  A CILCL   R +T T CGH+FCW CI  WC++ 
Sbjct:  173 LTLLQRLHVALFYIGGCFYHLSRRVAGISYLRVMGPNTGDGTIRSCYRLLGAVSLLQLLFTVCLQLNNFRQRQRARQEWKLYRNLSPQRTQSSR----------PRAARCILCLEERRHSTSTPCGHLFCWECITEWCNNK 303          
BLAST of Ggra8458.t2 vs. uniprot
Match: peroxisome biogenesis factor 10-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D9E1 (peroxisome biogenesis factor 10-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D9E1)

HSP 1 Score: 62.8 bits (151), Expect = 1.230e-7
Identity = 45/143 (31.47%), Postives = 64/143 (44.76%), Query Frame = 0
Query:  149 ILRALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAES---DGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSN 288
            I RA+ +LQR HLA FYVR +Y   A+R   V Y++       D        LG++    LLS    +  + R  +            A    ++         ++ PR+ C LCL   RD T T CGH+FCW CI  W ++ 
Sbjct:  141 IRRAVELLQRWHLAWFYVRGMYYQLAKRFTGVTYLSVRSELWRDSARHSYRMLGMLSLTQLLSTLAYSAYSNRNNV--------TEFFAGDLQENTTPAKSSAASLEPRSKCSLCLDVRRDTTATSCGHLFCWRCIFEWAANK 275          
BLAST of Ggra8458.t2 vs. uniprot
Match: A0A194S8N0 (RING-type domain-containing protein (Fragment) n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194S8N0_RHOGW)

HSP 1 Score: 62.0 bits (149), Expect = 2.140e-7
Identity = 44/137 (32.12%), Postives = 60/137 (43.80%), Query Frame = 0
Query:  156 LQRAHLALFYVRAVYGGAARRAARVRYVATAE--SDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRAT------CILCLGAVRDATLTLCGHVFCWNCICHW 284
            L+  HLA+FY+   Y   ++RA  +R+  +    S   P+    LGV+M V L+       LA R+R       A  +                +     R T      C LCLG +RDAT T CGHVFCW C+  W
Sbjct:  132 LRSVHLAVFYLFGRYYNLSKRAVGIRFALSGAQASSSAPSSYEVLGVLMAVQLVVRGA---LAIRKRRADAELAAVASRXXXXXXXXXXXXXXXRQQRKKRFTEDAERRCTLCLGTMRDATATECGHVFCWECVVGW 265          
The following BLAST results are available for this feature:
BLAST of Ggra8458.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A2V3IC877.510e-2648.85Peroxisome biogenesis factor 10 n=1 Tax=Gracilario... [more]
peroxisome biogenesis factor 10-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D637333.270e-1328.83peroxisome biogenesis factor 10-like n=1 Tax=Patir... [more]
peroxisome biogenesis factor 10-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145508122.930e-1226.79peroxisome biogenesis factor 10-like n=1 Tax=Aster... [more]
A0A109FJR46.330e-1134.88RING-type domain-containing protein (Fragment) n=1... [more]
K1R1W62.120e-830.72Peroxisome biogenesis factor 10 n=2 Tax=Crassostre... [more]
A0A836CLL05.370e-833.77Peroxisome biogenesis factor 10 n=1 Tax=Tribonema ... [more]
A0A0B6XY226.870e-826.12RING-type domain-containing protein n=1 Tax=Arion ... [more]
A0A6P7N4361.080e-733.33peroxisome biogenesis factor 10 n=1 Tax=Betta sple... [more]
peroxisome biogenesis factor 10-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D9E11.230e-731.47peroxisome biogenesis factor 10-like n=1 Tax=Priap... [more]
A0A194S8N02.140e-732.12RING-type domain-containing protein (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 231..302
e-value: 6.4E-8
score: 34.1
NoneNo IPR availablePANTHERPTHR23350:SF0PEROXISOME BIOGENESIS FACTOR 10coord: 8..287
NoneNo IPR availablePANTHERPTHR23350PEROXISOME ASSEMBLY PROTEIN 10coord: 8..287
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 137..193
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..106
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 218..304
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 194..217
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 107..136
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 256..289
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 272..281
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 257..299
score: 8.786275

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:771139..772221 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8458.t2Ggra8458.t2Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 771139..772221 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8458.t2 ID=Ggra8458.t2|Name=Ggra8458.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MSQQPAAALPRAAAGDVLRAHSKDDEYMALLRADVSRLLRLTLSARQRQR
HAAQQPRALRFAAGALTRVLYQLWTTTAPLYATPGEQHAGVAPVAGRPPQ
PLTRRRALLLALLQSSSARLLSVALAAVCGCAFRAAAATPPPPRTRERIL
RALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGV
VMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDA
VPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNLLLYHPPTLSCC
ILHS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001841Znf_RING