Ggra8458.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8458.t2
Unique NameGgra8458.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:771139..772221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004365772.1
Preferred namePEX10
PFAMsPex2_Pex12,zf-C3HC4_2,zf-C3HC4_3,zf-RING_2
Max annot lvl33154|Opisthokonta
KEGG koko:K13346
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0000003,GO:0000038,GO:0000209,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0006082,GO:0006464,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007049,GO:0007112,GO:0007140,GO:0007276,GO:0007281,GO:0007283,GO:0007285,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016049,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033206,GO:0033365,GO:0034613,GO:0036211,GO:0040007,GO:0042579,GO:0042760,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048588,GO:0048589,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0061630,GO:0061640,GO:0061659,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140013,GO:0140096,GO:1901564,GO:1901575,GO:1903046,GO:1990351,GO:1990415,GO:1990429
Evalue1.85e-12
EggNOG OGsCOG5574@1|root,KOG0317@2759|Eukaryota,38ESB@33154|Opisthokonta
Descriptionbiogenesis factor 10
COG categoryO
BRITEko00000,ko00001,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8458Ggra8458Gracilaria gracilis GNS1m malegenetig00000041_pilon 771139..772221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8458.t2Ggra8458.t2Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 771139..772221 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8458.t2.stop1Ggra8458.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 771139..771141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8458.t2.CDS1Ggra8458.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 771139..771189 -
Ggra8458.t2.CDS2Ggra8458.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 771358..772221 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8458.t2.exon1Ggra8458.t2.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 771139..771189 -
Ggra8458.t2.exon2Ggra8458.t2.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 771358..772221 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8458.t2.intron1Ggra8458.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 771190..771357 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8458.t2.start1Ggra8458.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 772219..772221 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8458.t2 ID=Ggra8458.t2|Name=Ggra8458.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=305bp
MSQQPAAALPRAAAGDVLRAHSKDDEYMALLRADVSRLLRLTLSARQRQR
HAAQQPRALRFAAGALTRVLYQLWTTTAPLYATPGEQHAGVAPVAGRPPQ
PLTRRRALLLALLQSSSARLLSVALAAVCGCAFRAAAATPPPPRTRERIL
RALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGV
VMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDA
VPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNLLLYHPPTLSCC
ILHS*
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spliced messenger RNA

>Ggra8458.t2 ID=Ggra8458.t2|Name=Ggra8458.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000041_pilon:771139..772221- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAGCAGCCGGCGGCGGCGCTGCCGCGCGCCGCGGCGGGCGACGT
GCTGCGCGCGCACAGCAAGGACGACGAGTACATGGCGCTGCTGCGCGCGG
ACGTATCGCGCCTGCTGCGTCTCACGCTCTCGGCGCGGCAGCGGCAGCGC
CACGCCGCGCAGCAGCCGCGCGCGCTGCGCTTCGCGGCGGGCGCGCTCAC
GCGCGTGTTGTACCAGCTATGGACGACGACGGCGCCGCTGTACGCCACGC
CGGGCGAGCAGCACGCCGGCGTGGCGCCGGTGGCCGGCCGGCCGCCGCAG
CCGCTCACGCGCCGGCGCGCGCTGCTGCTCGCGCTGCTGCAGTCTTCGTC
GGCGCGCTTGCTGTCCGTCGCGCTGGCGGCCGTTTGCGGCTGCGCGTTCC
GCGCCGCCGCCGCCACGCCGCCGCCGCCGCGCACGCGCGAGCGCATACTG
CGCGCGCTGCGCGTGTTGCAGCGCGCGCATCTGGCGCTGTTCTACGTGCG
CGCGGTATACGGCGGCGCGGCGCGTCGCGCCGCGCGCGTACGTTACGTGG
CGACGGCCGAGTCGGACGGGCAGCCCACGCTGCTGCCGGCGCTGGGCGTG
GTGATGGGCGTCATGCTGCTGTCGGACGCGTGCGCGGCGCTGCTGGCGGC
GCGGCGGCGCCTTCGCGCCGTGGGCTGGCGCGCCGCGTTGGCGATGCACG
CCGTCGGCGCGGACGACGACCACGACCACGACGACGATGGGAAGGACGCC
GTGCCGCCGCGAGCGACGTGCATTCTGTGTCTGGGCGCCGTGCGCGATGC
TACGCTTACGCTGTGCGGCCATGTGTTTTGCTGGAACTGCATCTGTCACT
GGTGCTCGTCCAACTTGCTTTTATACCACCCGCCCACACTATCGTGTTGC
ATTCTTCACAGCTGA
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protein sequence of Ggra8458.t2

>Ggra8458.t2 ID=Ggra8458.t2|Name=Ggra8458.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MSQQPAAALPRAAAGDVLRAHSKDDEYMALLRADVSRLLRLTLSARQRQR
HAAQQPRALRFAAGALTRVLYQLWTTTAPLYATPGEQHAGVAPVAGRPPQ
PLTRRRALLLALLQSSSARLLSVALAAVCGCAFRAAAATPPPPRTRERIL
RALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGV
VMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDA
VPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNLLLYHPPTLSCC
ILHS*
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mRNA from alignment at tig00000041_pilon:771139..772221-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8458.t2 ID=Ggra8458.t2|Name=Ggra8458.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000041_pilon:771139..772221- (Gracilaria gracilis GNS1m male)
ATGTCGCAGCAGCCGGCGGCGGCGCTGCCGCGCGCCGCGGCGGGCGACGT
GCTGCGCGCGCACAGCAAGGACGACGAGTACATGGCGCTGCTGCGCGCGG
ACGTATCGCGCCTGCTGCGTCTCACGCTCTCGGCGCGGCAGCGGCAGCGC
CACGCCGCGCAGCAGCCGCGCGCGCTGCGCTTCGCGGCGGGCGCGCTCAC
GCGCGTGTTGTACCAGCTATGGACGACGACGGCGCCGCTGTACGCCACGC
CGGGCGAGCAGCACGCCGGCGTGGCGCCGGTGGCCGGCCGGCCGCCGCAG
CCGCTCACGCGCCGGCGCGCGCTGCTGCTCGCGCTGCTGCAGTCTTCGTC
GGCGCGCTTGCTGTCCGTCGCGCTGGCGGCCGTTTGCGGCTGCGCGTTCC
GCGCCGCCGCCGCCACGCCGCCGCCGCCGCGCACGCGCGAGCGCATACTG
CGCGCGCTGCGCGTGTTGCAGCGCGCGCATCTGGCGCTGTTCTACGTGCG
CGCGGTATACGGCGGCGCGGCGCGTCGCGCCGCGCGCGTACGTTACGTGG
CGACGGCCGAGTCGGACGGGCAGCCCACGCTGCTGCCGGCGCTGGGCGTG
GTGATGGGCGTCATGCTGCTGTCGGACGCGTGCGCGGCGCTGCTGGCGGC
GCGGCGGCGCCTTCGCGCCGTGGGCTGGCGCGCCGCGTTGGCGATGCACG
CCGTCGGCGCGGACGACGACCACGACCACGACGACGATGGGAAGGACGCC
GTGCCGCCGCGAGCGACGTGCATTCTGTGTCTGGGCGCCGTGCGCGATGC
TACGCTTACGCTGTGCGGCCATGTGTTTTGCTGGAACTGCATCTGTCACT
GGTGCTCGTCCAACGTGAGTTGTTTTTGTTCTTCTGCGGCCTTCTTGCTC
GTGTGCTTGTTTCTCACCGCTTTGTTTTCATGCGTTGCGGGGAGAGCAGC
AGATCTGTCCGCTTTGCCGCCAACAGCTTCTCACCAGAGAGCTTGTCTGT
CTCTACAACTATTGAACATGCACTTGAAACAGTTGCTTTTATACCACCCG
CCCACACTATCGTGTTGCATTCTTCACAGCTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:771139..772221-

>Ggra8458.t2 ID=Ggra8458.t2|Name=Ggra8458.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00000041_pilon:771139..772221- (Gracilaria gracilis GNS1m male)
ATGTCGCAGCAGCCGGCGGCGGCGCTGCCGCGCGCCGCGGCGGGCGACGT
GCTGCGCGCGCACAGCAAGGACGACGAGTACATGGCGCTGCTGCGCGCGG
ACGTATCGCGCCTGCTGCGTCTCACGCTCTCGGCGCGGCAGCGGCAGCGC
CACGCCGCGCAGCAGCCGCGCGCGCTGCGCTTCGCGGCGGGCGCGCTCAC
GCGCGTGTTGTACCAGCTATGGACGACGACGGCGCCGCTGTACGCCACGC
CGGGCGAGCAGCACGCCGGCGTGGCGCCGGTGGCCGGCCGGCCGCCGCAG
CCGCTCACGCGCCGGCGCGCGCTGCTGCTCGCGCTGCTGCAGTCTTCGTC
GGCGCGCTTGCTGTCCGTCGCGCTGGCGGCCGTTTGCGGCTGCGCGTTCC
GCGCCGCCGCCGCCACGCCGCCGCCGCCGCGCACGCGCGAGCGCATACTG
CGCGCGCTGCGCGTGTTGCAGCGCGCGCATCTGGCGCTGTTCTACGTGCG
CGCGGTATACGGCGGCGCGGCGCGTCGCGCCGCGCGCGTACGTTACGTGG
CGACGGCCGAGTCGGACGGGCAGCCCACGCTGCTGCCGGCGCTGGGCGTG
GTGATGGGCGTCATGCTGCTGTCGGACGCGTGCGCGGCGCTGCTGGCGGC
GCGGCGGCGCCTTCGCGCCGTGGGCTGGCGCGCCGCGTTGGCGATGCACG
CCGTCGGCGCGGACGACGACCACGACCACGACGACGATGGGAAGGACGCC
GTGCCGCCGCGAGCGACGTGCATTCTGTGTCTGGGCGCCGTGCGCGATGC
TACGCTTACGCTGTGCGGCCATGTGTTTTGCTGGAACTGCATCTGTCACT
GGTGCTCGTCCAACTTGCTTTTATACCACCCGCCCACACTATCGTGTTGC
ATTCTTCACAGCTGA
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