Ggra8454.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8454.t1
Unique NameGgra8454.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Homology
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BLAST of Ggra8454.t1 vs. uniprot
Match: A0A2V3II54 (Clp protease adapter protein ClpF, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II54_9FLOR)

HSP 1 Score: 245 bits (626), Expect = 3.320e-79
Identity = 122/170 (71.76%), Postives = 137/170 (80.59%), Query Frame = 0 
Query:   83 AKRALDAQHPTAALRAQLRAALARQDFARACELRDRIDERSMMLLAERAKPAFAIGLVVVHKLLRYRMLLFGVDYRCRTARG-HDNCRCALIRRGEHQPWYHAAVDERDKSSGDNIVYVAEDECYPAAERTFVQHPITRIMFKGVYDADSCPGYTCYIPCGRDE--HEEY 249
            A+RALD   PTA LR +L+ AL  QDF+RAC LRDRID+ +MML AERAKP F IGLVV HKLL YRM+LFGVDYRCRTARG H      L  RG+ QPWYHAAVDERDK++GDNIVYVAEDEC PAAE T VQHPITRIMFKG+Y+  +CPG TCYIPCGRDE  +E+Y
Sbjct:   20 ARRALDDTDPTAKLRTELQHALDTQDFSRACALRDRIDQLTMMLFAERAKPKFPIGLVVRHKLLGYRMILFGVDYRCRTARGGHSFFSSGLNERGDDQPWYHAAVDERDKTAGDNIVYVAEDECCPAAEGTLVQHPITRIMFKGIYETTTCPGLTCYIPCGRDEEAYEDY 189
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BLAST of Ggra8454.t1 vs. uniprot
Match: R7QL48 (YccV-like domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL48_CHOCR)

HSP 1 Score: 202 bits (513), Expect = 4.520e-62
Identity = 101/165 (61.21%), Postives = 120/165 (72.73%), Query Frame = 0 
Query:   83 AKRALDAQHPTAALRAQLRAALARQDFARACELRDRIDERSMMLLAERAKPAFAIGLVVVHKLLRYRMLLFGVDYRCRTARGHDNCRCALIRRGEHQPWYHAAVDERDKSSGDNIVYVAEDECYPAAERTFVQHPITRIMFKGVYDADSCPGYTCYIPCGRDEHE 247
            A   LDA HPT ALR +L AAL+RQDFARA  LRD ID  +M  +A+R KP + +GLVVVH+ L YRM+LFG DYRCR  R     +    RRGE QPWYHAAVDERDKS+GDNIVYVAED+C PA     VQHPITRIMF+G++   +CPGY+ Y+P G +E E
Sbjct:   20 AAEQLDAAHPTFALRRRLEAALSRQDFARAAALRDEIDRVNMHAVADRCKPRYPLGLVVVHRRLSYRMVLFGADYRCRAPRATAG-QAWGSRRGELQPWYHAAVDERDKSTGDNIVYVAEDDCVPAPPGVQVQHPITRIMFRGLHSQRACPGYSWYVPVGNEEAE 183
The following BLAST results are available for this feature:
BLAST of Ggra8454.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3II543.320e-7971.76Clp protease adapter protein ClpF, chloroplastic n... [more]
R7QL484.520e-6261.21YccV-like domain-containing protein n=1 Tax=Chondr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011722Hemimethylated DNA-binding domainTIGRFAMTIGR02097TIGR02097coord: 134..228
e-value: 3.7E-12
score: 44.4
IPR011722Hemimethylated DNA-binding domainPFAMPF08755YccV-likecoord: 134..226
e-value: 5.1E-11
score: 42.9
IPR036623Hemimethylated DNA-binding domain superfamilyGENE3D2.30.30.390coord: 131..236
e-value: 2.5E-15
score: 58.2
IPR036623Hemimethylated DNA-binding domain superfamilySUPERFAMILY141255YccV-likecoord: 134..226

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:766256..767008 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8454.t1Ggra8454.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 766256..767008 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8454.t1 ID=Ggra8454.t1|Name=Ggra8454.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MKEPCFTTYALPLPLPLPLPLPPPAPPSLSPARCALADHAAHDAAARDAQ
PLSRAENHVLLSRMLQHALRAQDFEAAARLRDAKRALDAQHPTAALRAQL
RAALARQDFARACELRDRIDERSMMLLAERAKPAFAIGLVVVHKLLRYRM
LLFGVDYRCRTARGHDNCRCALIRRGEHQPWYHAAVDERDKSSGDNIVYV
AEDECYPAAERTFVQHPITRIMFKGVYDADSCPGYTCYIPCGRDEHEEYL
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011722Hemimethylated_DNA-bd_dom
IPR036623Hemimethylated_DNA-bd_sf