Ggra8454.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8454.t1
Unique NameGgra8454.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:766256..767008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004490135.1
PFAMsUVR,YccV-like
Max annot lvl35493|Streptophyta
KEGG koko:K11940
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009368,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009840,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Evalue2.43e-08
EggNOG OGsCOG3785@1|root,2QPQU@2759|Eukaryota,37MXA@33090|Viridiplantae,3G7K7@35493|Streptophyta,4JNGX@91835|fabids
DescriptionHemimethylated DNA-binding protein YccV like
COG categoryS
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8454Ggra8454Gracilaria gracilis GNS1m malegenetig00000041_pilon 766256..767008 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8454.t1.start1Ggra8454.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 766256..766258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8454.t1.CDS1Ggra8454.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 766256..767008 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8454.t1.exon1Ggra8454.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 766256..767008 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8454.t1.stop1Ggra8454.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 767006..767008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8454.t1Ggra8454.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 766256..767008 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8454.t1 ID=Ggra8454.t1|Name=Ggra8454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=251bp
MKEPCFTTYALPLPLPLPLPLPPPAPPSLSPARCALADHAAHDAAARDAQ
PLSRAENHVLLSRMLQHALRAQDFEAAARLRDAKRALDAQHPTAALRAQL
RAALARQDFARACELRDRIDERSMMLLAERAKPAFAIGLVVVHKLLRYRM
LLFGVDYRCRTARGHDNCRCALIRRGEHQPWYHAAVDERDKSSGDNIVYV
AEDECYPAAERTFVQHPITRIMFKGVYDADSCPGYTCYIPCGRDEHEEYL
*
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spliced messenger RNA

>Ggra8454.t1 ID=Ggra8454.t1|Name=Ggra8454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000041_pilon:766256..767008+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGAGCCGTGCTTCACGACGTACGcgctgccgctgccgctgccgct
gccgctgccgctgccgccgccgGCGCCGCCGTCGCTGTCGCCGGCGCGCT
GCGCGCTGGCGGACCACGCCGCGCACGACGCGGCGGCGCGCGACGCGCAG
CCGCTGTCGCGCGCGGAGAACCACGTGCTGCTGTCGCGCATGCTGCAGCA
CGCGCTGCGCGCGCAGGACTTTGAGGCGGCGGCGCGGCTGCGCGACGCCA
AGCGCGCGCTGGACGCGCAGCACCCGACGGCGGCGCTGCGCGCGCAGCTG
CGCGCCGCGCTGGCGCGCCAGGACTTTGCGCGCGCGTGCGAGCTGCGCGA
CCGCATCGACGAGCGCTCCATGATGCTGCTGGCGGAGCGCGCAAAGCCCG
CGTTTGCGATTGGACTCGTGGTGGTGCACAAGCTGCTGCGCTACCGCATG
CTGCTGTTTGGCGTCGATTATCGCTGCCGTACCGCCAGGGGGCATGACAA
CTGCAGGTGCGCGCTCATACGCAGGGGCGAGCACCAGCCGTGGTATCACG
CCGCGGTGGATGAGAGGGATAAGAGCTCGGGCGATAACATTGTGTACGTG
GCGGAGGATGAGTGCTATCCGGCCGCGGAGCGCACTTTTGTGCAGCACCC
CATTACCAGAATCATGTTCAAGGGCGTGTATGACGCCGACAGTTGCCCGG
GATACACGTGCTACATTCCTTGTGGCAGGGACGAGCATGAGGAGTACCTA
TGA
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protein sequence of Ggra8454.t1

>Ggra8454.t1 ID=Ggra8454.t1|Name=Ggra8454.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MKEPCFTTYALPLPLPLPLPLPPPAPPSLSPARCALADHAAHDAAARDAQ
PLSRAENHVLLSRMLQHALRAQDFEAAARLRDAKRALDAQHPTAALRAQL
RAALARQDFARACELRDRIDERSMMLLAERAKPAFAIGLVVVHKLLRYRM
LLFGVDYRCRTARGHDNCRCALIRRGEHQPWYHAAVDERDKSSGDNIVYV
AEDECYPAAERTFVQHPITRIMFKGVYDADSCPGYTCYIPCGRDEHEEYL
*
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mRNA from alignment at tig00000041_pilon:766256..767008+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8454.t1 ID=Ggra8454.t1|Name=Ggra8454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000041_pilon:766256..767008+ (Gracilaria gracilis GNS1m male)
ATGAAAGAGCCGTGCTTCACGACGTACGcgctgccgctgccgctgccgct
gccgctgccgctgccgccgccgGCGCCGCCGTCGCTGTCGCCGGCGCGCT
GCGCGCTGGCGGACCACGCCGCGCACGACGCGGCGGCGCGCGACGCGCAG
CCGCTGTCGCGCGCGGAGAACCACGTGCTGCTGTCGCGCATGCTGCAGCA
CGCGCTGCGCGCGCAGGACTTTGAGGCGGCGGCGCGGCTGCGCGACGCCA
AGCGCGCGCTGGACGCGCAGCACCCGACGGCGGCGCTGCGCGCGCAGCTG
CGCGCCGCGCTGGCGCGCCAGGACTTTGCGCGCGCGTGCGAGCTGCGCGA
CCGCATCGACGAGCGCTCCATGATGCTGCTGGCGGAGCGCGCAAAGCCCG
CGTTTGCGATTGGACTCGTGGTGGTGCACAAGCTGCTGCGCTACCGCATG
CTGCTGTTTGGCGTCGATTATCGCTGCCGTACCGCCAGGGGGCATGACAA
CTGCAGGTGCGCGCTCATACGCAGGGGCGAGCACCAGCCGTGGTATCACG
CCGCGGTGGATGAGAGGGATAAGAGCTCGGGCGATAACATTGTGTACGTG
GCGGAGGATGAGTGCTATCCGGCCGCGGAGCGCACTTTTGTGCAGCACCC
CATTACCAGAATCATGTTCAAGGGCGTGTATGACGCCGACAGTTGCCCGG
GATACACGTGCTACATTCCTTGTGGCAGGGACGAGCATGAGGAGTACCTA
TGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:766256..767008+

>Ggra8454.t1 ID=Ggra8454.t1|Name=Ggra8454.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00000041_pilon:766256..767008+ (Gracilaria gracilis GNS1m male)
ATGAAAGAGCCGTGCTTCACGACGTACGcgctgccgctgccgctgccgct
gccgctgccgctgccgccgccgGCGCCGCCGTCGCTGTCGCCGGCGCGCT
GCGCGCTGGCGGACCACGCCGCGCACGACGCGGCGGCGCGCGACGCGCAG
CCGCTGTCGCGCGCGGAGAACCACGTGCTGCTGTCGCGCATGCTGCAGCA
CGCGCTGCGCGCGCAGGACTTTGAGGCGGCGGCGCGGCTGCGCGACGCCA
AGCGCGCGCTGGACGCGCAGCACCCGACGGCGGCGCTGCGCGCGCAGCTG
CGCGCCGCGCTGGCGCGCCAGGACTTTGCGCGCGCGTGCGAGCTGCGCGA
CCGCATCGACGAGCGCTCCATGATGCTGCTGGCGGAGCGCGCAAAGCCCG
CGTTTGCGATTGGACTCGTGGTGGTGCACAAGCTGCTGCGCTACCGCATG
CTGCTGTTTGGCGTCGATTATCGCTGCCGTACCGCCAGGGGGCATGACAA
CTGCAGGTGCGCGCTCATACGCAGGGGCGAGCACCAGCCGTGGTATCACG
CCGCGGTGGATGAGAGGGATAAGAGCTCGGGCGATAACATTGTGTACGTG
GCGGAGGATGAGTGCTATCCGGCCGCGGAGCGCACTTTTGTGCAGCACCC
CATTACCAGAATCATGTTCAAGGGCGTGTATGACGCCGACAGTTGCCCGG
GATACACGTGCTACATTCCTTGTGGCAGGGACGAGCATGAGGAGTACCTA
TGA
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