Ggra8308.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra8308.t1
Unique Name	Ggra8308.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	130

Homology

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BLAST of Ggra8308.t1 vs. uniprot
Match: A0A2V3IYE4 (Proteasome activator complex subunit 4A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYE4_9FLOR)

HSP 1 Score: 103 bits (257), Expect = 3.720e-23
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 0

Query:   42 NVECIDGSPYIGRDVRDTHCRNLVSLLTKSRKFITPDDSAETFWKDFASELHSTDIDVKFKALLLLS----------CAYLPSGLVV 118
            +++C+DGSPY+GRDVRD+HCRNLVSLLTKSR F+TPDDSAE  W  FA  L + ++D  FK LLLLS           A++P G+ +
Sbjct:  185 HIDCVDGSPYVGRDVRDSHCRNLVSLLTKSRNFLTPDDSAERIWNHFAPNLTTKNVDDNFKQLLLLSHVLPTRGQSWSAWVPQGMAI 271

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BLAST of Ggra8308.t1 vs. uniprot
Match: A0A7S0BTP4 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BTP4_9RHOD)

HSP 1 Score: 79.3 bits (194), Expect = 3.410e-15
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 0

Query:   42 NVECIDGSPYIGRDVRDTHCRNLVSLLTKSRKFITPDDSAETFWKDFASELHSTDIDVKFKALLLLSCAYLPS 114
            +++C DG  YIG+D+RD HCRNLV LL K R F+ PDDSAE  W +   ++  T   + F+ LLLL C  LP+
Sbjct:  149 HIDCADGGAYIGKDIRDAHCRNLVPLLRKCRNFLQPDDSAERIWNELGVDIDPTRSMICFEPLLLL-CQVLPT 220

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BLAST of Ggra8308.t1 vs. uniprot
Match: A0A5J4Z085 (Proteasome activator complex subunit 4A n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z085_PORPP)

HSP 1 Score: 74.3 bits (181), Expect = 6.490e-13
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 0

Query:   42 NVECIDGSPYIGRDVRDTHCRNLVSLLTKSRKFITPDDSAETFWKDFASELHSTDIDVKFKALLLL 107
            +V+C  G PY+GRDVRD HCRN+++LL K R ++ P+D+AE  W  FA  +     D+ F  LL+L
Sbjct:  180 HVDCASGGPYVGRDVRDAHCRNMLTLLCKCRNYLHPEDTAEKIWDAFARRIQIHSADLAFGPLLVL 245

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BLAST of Ggra8308.t1 vs. uniprot
Match: A0A7S1TG62 (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TG62_9RHOD)

HSP 1 Score: 63.5 bits (153), Expect = 3.770e-9
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0

Query:   42 NVECIDGSPYIGRDVRDTHCRNLVSLLTKSRKFITPDDSAET--FWKDFASELHSTDIDVKFKALLLLS 108
            ++E  +GSP++G+DVRD HCR +  LL KSR F+ PD ++ T   W+D   ++    +D  F+ LL+LS
Sbjct:  155 HIESAEGSPFVGKDVRDAHCREMSILLRKSRNFLGPDLASATREIWEDLGLKIDPFRVDKAFEPLLMLS 223

The following BLAST results are available for this feature:

BLAST of Ggra8308.t1 vs. uniprot

BLAST of Ggra8308.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A2V3IYE4	3.720e-23	55.17	Proteasome activator complex subunit 4A n=1 Tax=Gr...	[more]
A0A7S0BTP4	3.410e-15	49.32	Hypothetical protein (Fragment) n=1 Tax=Rhodosorus...	[more]
A0A5J4Z085	6.490e-13	46.97	Proteasome activator complex subunit 4A n=1 Tax=Po...	[more]
A0A7S1TG62	3.770e-9	42.03	Hypothetical protein (Fragment) n=1 Tax=Compsopogo...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 126..129
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..102
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 103..125
None	No IPR available	TMHMM	TMhelix		coord: 103..125

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000958_pilon	contig	tig00000958_pilon:136361..136750 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8308.t1	Ggra8308.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000958_pilon 136361..136750 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra8308.t1 ID=Ggra8308.t1|Name=Ggra8308.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=130bp
MARYTERLGQRFFLLTVAITGKMPNDHRIIAIPEEVGFPLDNVECIDGSP
YIGRDVRDTHCRNLVSLLTKSRKFITPDDSAETFWKDFASELHSTDIDVK
FKALLLLSCAYLPSGLVVGLGAGGYEDIS*