Ggra8227.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8227.t1
Unique NameGgra8227.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1361
Homology
BLAST of Ggra8227.t1 vs. uniprot
Match: A0A2V3J6J3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6J3_9FLOR)

HSP 1 Score: 524 bits (1349), Expect = 1.140e-166
Identity = 346/655 (52.82%), Postives = 443/655 (67.63%), Query Frame = 0
Query:  681 MTNSRNPRRRRPSKRPQDLFNFFDEEEMKTSRSRNNXXXXXRRKHNADAIEANELDDVVDAVADDAVDDGFFSRYKKDAENGRIFDVSDLDAEAKEEFKSSSADHQTAARAFDAVDKLFGNLNAKKGDKASGSAMSDERIDKSSWLNDIKARAATSGEPERANAVDVQAFDDSSILKAVADESDFSEAKVTPDPDEKGSFSDVGQQESFPQTTRDKSSEKKESRSSTASSFERFMSFARKGPAPVQVIESKERDPRREKTNREDFRRRSRSSSLSNLLSTNRPSDRYSKATYEPADDIMAAEIEVGNASSGKRNGRRQQFSAVRRVGGKTRRILKPPREWEPIISDDVRNVRSDSRGMGGRA-RPSHLRNAVANCTSCRGSGMETCALCIGSGWVAPMKEFALLDGQERKALCEEFWSTPGLVIDSQGNAQCIRCNGIGKQFCPTCKGSGSALETGFNYNDRYEVFDNFPNVRDEAVVENDYDEXXXXXXXXXXXEDDFESFQLYQGSVDSFDLSTGKGRNDDSEDKL-EDDEVVLGVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEESEELLATLTSMDLRDQKRSDGISGVFSPLEKDGELLEDEEDEEDLDFEVEDDEFXXXXXXSEELFDLEL--DDFADGVDDVSAD 1331
            MTNSRNPRRRRP++RPQD+FNFFD+E+    + R++      R+ N    + +E D  +D    DAVDDGFFSRY K+AENGR+F+VS LDAE +EEFKSS+ DHQTAARAFDAVD+LFG++NA+K   ASGS+ +D++ DKSSWL+DIKARAATSGE + A AVDVQA D+S  L     + DF+EA ++PDP E   +S    Q       R+K S +    S  +S+F+ FM+FARKGP   +  +++E         RED R R R    S++L+  R  +R S   YEP DD M AEIE G+    +R+GRRQ+++AVRRVGG+TRRIL PP EW+P+  D+V  VRS++R +GGR  R S L+  +A+C SCRG+G ETCA+C+GSGWVAP+ E +  +   R+ L EEFWS P LV+D  GNAQC+RCNGIGKQFC +C+GSGSAL  GF+ ++RYEVFD FP+V D+AVV  D DE  XXXXXXXXX   FESFQLYQGS D F+LSTGKGR    E KL EDD+ VL VGD          XXXXXXXXXXXXXXXXX         A L SMDL ++K      G+F+ LEK   LLED++D ++        E+X      + L+DLEL  D++ DG ++ S+D
Sbjct:   31 MTNSRNPRRRRPNRRPQDMFNFFDDEDNSGYKQRSHKQRRPHRRRNPPVEDEDETDQDID----DAVDDGFFSRYVKEAENGRVFNVSKLDAEPREEFKSSNLDHQTAARAFDAVDRLFGSINAQKDKGASGSSTTDDKFDKSSWLDDIKARAATSGERDTAAAVDVQAVDESQSLDERVMDDDFAEAGISPDPSE---YSRSKSQ------NREKGSARGNEGSEHSSTFQTFMNFARKGPTTDREEDTREXXXXXXXXAREDIRGRPRRPPPSSVLNLGRFGERDSTDNYEPLDDEMEAEIEFGSKPK-RRSGRRQRYTAVRRVGGRTRRILNPPLEWQPMDQDEVGQVRSENRPLGGRGPRKSQLQGVIADCQSCRGAGTETCAICLGSGWVAPLNEPSGKEKTGRRELLEEFWSRPNLVVDIHGNAQCVRCNGIGKQFCGSCQGSGSALRKGFSLSERYEVFDMFPSVSDDAVV--DGDEEYXXXXXXXXXXXXFESFQLYQGSADLFNLSTGKGRTGGEESKLQEDDDDVLDVGDDEDAVVMNVEXXXXXXXXXXXXXXXXX---------AGLESMDLGEEKGRTRGEGMFTELEKSEGLLEDDDDIDEXXXXXXXXEYXESDE-GDGLYDLELEEDEYDDGFEEGSSD 659          
BLAST of Ggra8227.t1 vs. uniprot
Match: A0A2V3J5R9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5R9_9FLOR)

HSP 1 Score: 310 bits (794), Expect = 9.530e-92
Identity = 187/351 (53.28%), Postives = 230/351 (65.53%), Query Frame = 0
Query:    1 MASSSADFVLDEGLDEDEDVLVFQSGHHYTAPESSTTSSQHQADRTIPEPQGQPSSSTH-IDPNTPASLSSP-AVIIDGLPISSSRADLDAFLDSAPITNVRLRRLEKDGLLRVRVQFADSIAATKVLSQDGADFRGSVIAVKVATDERWEASNAEQTSR----RMQQPQTKIIPDAKQVQTGFWNAFAAAKNVAERLEKGARHLSEDLERRLQVSEKVEQTKTAIVNIDQQYGVSKTVSDVAKKGREXXXXXXXXXXXXXXXXXXXXNVSGAAGVVAREVDESFRVSDRARNVFNDAIKNDTVGNVAKGVVGALDGDTPTTKKRTQPTADEKEELP-SSEQSNSTNFEVG 344
            M SS+ADFVLDEGLDEDEDVL FQS  H    +   +  Q  ++     PQ  PS        N P    +P AVIIDGLPIS+SRADLDA LD APITNVRLRRLEKD LLRVRVQF  +  A K L +DG DFRG+VI+VK AT+ERW+AS  +        R  +  T  +PDAK VQ+GFW+AFAAAKNVAERLE+GARHL +DLERRL V+EKVEQTK AI  +DQQY VSKTV ++ ++G++                    +VSG A +VAREVDESFRV DRARN    A++ND V  VAK  +  LD +    K ++QP  +E E+ P S++ ++  +FEVG
Sbjct:    1 MTSSAADFVLDEGLDEDEDVLAFQSSLHPPPIQEKNSPPQTPSE----PPQSLPSXXXXSXXQNAPLPQDAPTAVIIDGLPISASRADLDALLDGAPITNVRLRRLEKDRLLRVRVQFEHAQTAAKALEKDGTDFRGAVISVKKATEERWQASFLDSPRHTPNPRSPRSPTLSLPDAKAVQSGFWSAFAAAKNVAERLEQGARHLGDDLERRLHVTEKVEQTKRAIDQLDQQYSVSKTVVEMTERGKQAAVQVDKSLGLSDGVNKVSTDVSGVARIVAREVDESFRVGDRARNAVQGAMQNDAVSGVAKRAMATLDRNASPGKSKSQPMTEEPEQPPPSTDDASGQHFEVG 347          
BLAST of Ggra8227.t1 vs. uniprot
Match: R7QUL0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUL0_CHOCR)

HSP 1 Score: 192 bits (487), Expect = 9.270e-49
Identity = 137/348 (39.37%), Postives = 193/348 (55.46%), Query Frame = 0
Query:  931 KERDPRREKTNRE---DFRRRSRSSSLSNLLSTNRPSD-RYSKA-------TYEPADDIMAAEIEVGNASSGKRNGRRQQFSAVRRVGGKTRRILKPPREWEPIISDDVRNVRSDSRGMGG-RARPSHLRNAVANCTSCRGSGMETCALCIGSGWVAPMKEFALLDGQERKALCEEFWSTPGLVIDSQGNAQCIRCNGIGKQFCPTCKGSGSALETGFNYNDRYEVFDNFPNVRDEAVVENDYDEXXXXXXXXXXXEDDFESFQLYQGSVDSFDLS-TGKGRNDDSEDKLE-DDEVVLGVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEESEELLATLTSMDLRD 1264
            K ++P+  KT RE   D  R   +S++S +L   +  D R + A       +YE  DD M   I +   +  K + RRQ+F+AVRRV  ++ +I KPP EW+P+  +++  VRSD R +GG R   S  +  VANC +CRGSG++TC+ C+GSGWV P+ +  +   + RK L E+ W+ P L +D+ G AQCI CNGIGKQFC +CKGSGSAL  GF+ +++ E+FD      D++ +  D   XXXXXXXXXXX       QLY G  +SF+   T    N ++ D  E DD++ +G  D                             +ES ELLATL +M L D
Sbjct:   40 KRKEPQERKTTREPRIDEGRAPPASNISRILGLTKQIDSRRADAPREKDDDSYEALDDEMEESISIRGDAVRKGSLRRQKFTAVRRVANRSFKIHKPPDEWKPMTEEEIAKVRSDGRSIGGGRVGSSKGKGIVANCQTCRGSGLDTCSACLGSGWVPPLDKIGM--SESRKELLEKIWNRPNLCVDNYGEAQCILCNGIGKQFCDSCKGSGSALRKGFSLSEKREIFDFDDPEEDDSCLGEDXXXXXXXXXXXXXXXXXXXXXQLYTGPEESFNFHRTSTSFNSETGDGDESDDDLRIGNEDELEVD------------------------DESAELLATLEAMHLAD 361          
BLAST of Ggra8227.t1 vs. uniprot
Match: R7QRC8 (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRC8_CHOCR)

HSP 1 Score: 167 bits (423), Expect = 1.330e-41
Identity = 124/361 (34.35%), Postives = 178/361 (49.31%), Query Frame = 0
Query:    1 MASSSADFVLDEGLDEDEDVLVFQSGHHYTAPESSTTSSQHQADRTIPEPQGQPSSSTHIDPNTPASLSSP--AVIIDGLPISSSRADLDAFLDSA--PITNVRLRRLEKDGLLRVRVQFADSIAATKVLSQDGADFRGSVIAVKV--ATDERWEASNAEQTSR-----RMQQPQTKI---IPDAKQVQTGFWNAFAAAKNVAERLEKGARHLSEDLERRLQVSEKVEQTKTAIVNIDQQYGVSKTVSDVAKKGREXXXXXXXXXXXXXXXXXXXXNVSGAAGVVAREVDESFRVSDRARNVFNDAIKNDTVGNVAKGVVGALDGDTPTTKKRTQPTAD----EKEELPSSEQSNSTNFEV 343
            MA   +DFVLDEGLD+DED+L F S         + T+         P+P   P+                   VIIDG+P +SSR DLDAF  +    I +++LRR+E   +LR R++F    AA   L +DG  F  S +AV V  A+ ERW      Q         +  P   I   +PD   V +GFW+AF+AA+   ERLE+ A  L E LE +L +SEKV++T+ A+V +D++  VS+ V  +A  G+                     +V  AA  +A EVDE F +S++AR   N A++NDTVG   + +V    G TPT +    P  D    +K   PS  + N+   ++
Sbjct:    1 MAQEFSDFVLDEGLDDDEDILAFHSNRQRGGGGYAETAG-------TPQPNASPTXXXXXXXXXXXXXXXXXTTVIIDGMPPTSSRPDLDAFFSACGGKILSLQLRRIEASNILRARIKFDSEEAAASALQRDGQVFPRSDLAVSVKPASMERWNDGCGSQRGNGAPGATLTSPTNSIMQMLPDTNAVTSGFWSAFSAARXXXERLEEKATKLGEQLEEKLHLSEKVDETRDALVEVDRKLQVSEKVGKMAVAGKSAAQGIDETYGISKQVGKVAADVGSAARTMASEVDEDFHLSEKARVATNLALQNDTVGPAVRSIVDNF-GATPTGEAAPSPRKDGVRRKKNYQPSGVEQNAVQTQL 353          
The following BLAST results are available for this feature:
BLAST of Ggra8227.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J6J31.140e-16652.82Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5R99.530e-9253.28Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QUL09.270e-4939.37Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QRC81.330e-4134.35RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1236..1263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 305..347
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 951..967
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 693..714
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 367..393
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 670..686
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 926..950
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 590..729
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1205..1254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 893..907
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 865..970
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1153..1173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1192..1360
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1157..1173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1282..1360
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 826..846
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 604..669

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:186808..193408 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8227.t1Ggra8227.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 186808..193408 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8227.t1 ID=Ggra8227.t1|Name=Ggra8227.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1361bp
MASSSADFVLDEGLDEDEDVLVFQSGHHYTAPESSTTSSQHQADRTIPEP
QGQPSSSTHIDPNTPASLSSPAVIIDGLPISSSRADLDAFLDSAPITNVR
LRRLEKDGLLRVRVQFADSIAATKVLSQDGADFRGSVIAVKVATDERWEA
SNAEQTSRRMQQPQTKIIPDAKQVQTGFWNAFAAAKNVAERLEKGARHLS
EDLERRLQVSEKVEQTKTAIVNIDQQYGVSKTVSDVAKKGREAAEDVDKT
YGISNGVTKVASNVSGAAGVVAREVDESFRVSDRARNVFNDAIKNDTVGN
VAKGVVGALDGDTPTTKKRTQPTADEKEELPSSEQSNSTNFEVGDDIAIT
PGFPGVYPSVVITSESPASRHATTRRTSEKANTGQVKEKVASEYGNGISN
GGSCCAEHDPVAESGARVGEGRVHGPDSFKTGLEIVERFEEVTKVEKVYA
GDEVGNVGACVAGGERTSDGPFDPSSLPDEDYLDMMFIPLSNEDRTRLSE
KKTLASLFHELLPELQANETEGPEPRDCGEFERRTEPVPTTVLGDDYLDQ
MFAPLPSEDKIRLSSNQTQESLLEELLGNDYAVGGPRACEGRLKEDVHPK
SQIGNADTMEQHGPMPSTQVPTSMTDPLVSSPRQVGVTHNQNVLEGSPSA
SWTQDGKRQDGNLNPAKTGKRKTSSREKDAMTNSRNPRRRRPSKRPQDLF
NFFDEEEMKTSRSRNNRTRRPRRKHNADAIEANELDDVVDAVADDAVDDG
FFSRYKKDAENGRIFDVSDLDAEAKEEFKSSSADHQTAARAFDAVDKLFG
NLNAKKGDKASGSAMSDERIDKSSWLNDIKARAATSGEPERANAVDVQAF
DDSSILKAVADESDFSEAKVTPDPDEKGSFSDVGQQESFPQTTRDKSSEK
KESRSSTASSFERFMSFARKGPAPVQVIESKERDPRREKTNREDFRRRSR
SSSLSNLLSTNRPSDRYSKATYEPADDIMAAEIEVGNASSGKRNGRRQQF
SAVRRVGGKTRRILKPPREWEPIISDDVRNVRSDSRGMGGRARPSHLRNA
VANCTSCRGSGMETCALCIGSGWVAPMKEFALLDGQERKALCEEFWSTPG
LVIDSQGNAQCIRCNGIGKQFCPTCKGSGSALETGFNYNDRYEVFDNFPN
VRDEAVVENDYDEDDYDDDDEDEVEDDFESFQLYQGSVDSFDLSTGKGRN
DDSEDKLEDDEVVLGVGDDDDEVLSVEDEDADDMNVEQGDDDMDEVEEES
EELLATLTSMDLRDQKRSDGISGVFSPLEKDGELLEDEEDEEDLDFEVED
DEFEEENEDSEELFDLELDDFADGVDDVSADSTDDGEYAFDEDEDEDEDE
DEDGAEEEVA*
back to top