Ggra820.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra820.t1
Unique NameGgra820.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length450
Homology
BLAST of Ggra820.t1 vs. uniprot
Match: A0A2V3IRR6 (RNA polymerase II-associated factor 1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRR6_9FLOR)

HSP 1 Score: 604 bits (1557), Expect = 1.990e-213
Identity = 312/442 (70.59%), Postives = 373/442 (84.39%), Query Frame = 0
Query:    1 MSTPYEKLIRPGSQPSRE--KPRVPPPAQSATAAKKMLRRPARIEKPQLPFSVRPRFRFDVPPPPMDPKMLLGTLSTASYAEPHFSELERNFRPSAIPSNPTHGLRVNLVDTQLYKAPARLTAEDMSLLETIMKGRSGGGLLNPRSGAPDKMRNPGMPPPPRKPETTTAPWMRRMAYDEYDRT-AHKNVHAADLAAQMQEINREKEARLEKSRRERLMKSFKQPSRNMRHPGRKMGNVRAVSAAPIYPDFLHMLRELVSVEVDKDEILTVQERLRNNPEAAEESLRTTATVSVAERSTTRGSQKYVACYTPTLKTLEKRKRRREESKPDEKQSSKKVCFGDKEDYQWVGEYSIREGKFEDPRVSGVHGRSCFAISEHTISGGTARVVTAGRVGTIWKLSRRPQTSGIKLGKNGLRITLQPELDETNDDHVESMLSGTSTKRR 439
            MSTPYE+LIRP SQPSRE  KP   P A +ATAAKKM+RRP RIEKPQLPFSVRPRFRF+VPPPPMDPKMLLGTLSTA+YAEPHFS+LER+FRPSAIPSNPTHGLR NLVDTQLYKAP +L ++D++LL+ IMKGRSGG  LN R+   DKMR+P MPPPPRKPE T  PWMRRMAYDEYD T AHKN+HA +LAA+M+EINR+KEA+ +K RR+RL+KSFK PSRNM+HPGRK+GNVR V+AAPIYPD L+++REL+++EVDKDE+LTV +R++ +PEAA+ES+ TTATVSVAER   +  +K+VACYTPTLKTL KRKR +     D  Q SKK+ FGDKEDYQWVGEY+IREG FED RV+G+ GRSCF ++EH I+GG ARVVTA R+GT WKLSRR Q+   +LGKNGLRIT + E D+ N++ +ES+LSG + KRR
Sbjct:    1 MSTPYERLIRPVSQPSREHEKPPQQPTATTATAAKKMMRRPVRIEKPQLPFSVRPRFRFEVPPPPMDPKMLLGTLSTAAYAEPHFSDLERDFRPSAIPSNPTHGLRANLVDTQLYKAPVKLESDDIALLDMIMKGRSGGEPLNARNTTRDKMRDPRMPPPPRKPEPTNVPWMRRMAYDEYDTTTAHKNMHAVELAAKMREINRQKEAQSDKHRRDRLLKSFKPPSRNMKHPGRKIGNVRPVNAAPIYPDVLNLMRELIAIEVDKDEVLTVPKRVKKDPEAADESILTTATVSVAERRANQREKKFVACYTPTLKTLRKRKRVKXXXXGDGDQMSKKMHFGDKEDYQWVGEYAIREGVFEDQRVTGIPGRSCFGVTEHFIAGGKARVVTASRIGTTWKLSRRAQSGRARLGKNGLRIT-KDEQDDINEEVLESLLSGENLKRR 441          
BLAST of Ggra820.t1 vs. uniprot
Match: R7Q0U1 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0U1_CHOCR)

HSP 1 Score: 261 bits (666), Expect = 2.000e-77
Identity = 175/446 (39.24%), Postives = 256/446 (57.40%), Query Frame = 0
Query:    1 MSTPYEKLIRPG--SQPSREKPRVPPPAQSATAAKKMLRRPARIEKPQLPFSVRPRFRFDVPPPPMDPKMLLGTLSTASYAEPHFSELERNFRPSAIPSNPTHGLRVNLVDTQLYKAPARLTAEDMSLLETIMKGRSGGGLLNPRSGAPDKMRNP----GMPPPPRKPETTTAPWMRRMAYDEYDRTAHKNVH----------AADLAAQMQEINREKEARLEKSRRERLMKSFKQPSRNMRHPGRKMGNVRAVSAAPIYPDFLHMLRELVSVEVDKDEILTVQERLRNNPEAAEESLRTTATVSVAERSTTRGSQKYVACYTPTLKTLEKRKRRREESKPDEKQSSKKVCFGDKEDYQWVGEYSIREGKFEDPRVS-GVHGRSCFAISEHTISGGT-ARVVTAGRVGTIWKLSRRPQTSGIKLGKNGLRIT----LQPELDETND 424
            MS PY++++R     +P R   R   P+ S  +  K +R    + KP + F+VRPRFRFD+P PPMDPKMLLG LSTASY+ P +S+LE++FRP AIP++P +GLR NLV+  LY+    L+ +D +LL ++M GR   G  + R+G PD +R      G+ PP +KP TTT P++R M+YDEY  ++    H          AA LA  M+      + +L + RR  ++ SF+   +  RHP R+  +++ V  AP+ PDF  + +  V++E DKD+ LT  ER R   EA +ES RT   + V +       ++ +ACYTP+  T+ +RK  REE  P+  +  KK+ + D+E Y W+ EY++RE K  +   S     RSCFA  E+T +      VV   R+   WKLS+RP T   K GK GL++     +QP+ D   D
Sbjct:   44 MSNPYDQILRSSVPQKPQRAPVRDSQPSSSVLSRAKRIRP---VPKPPIRFNVRPRFRFDLPDPPMDPKMLLGRLSTASYSRPVYSDLEKDFRPPAIPADPKYGLRPNLVENALYRKSNELSMDDNALLFSVMAGRP--GYTSSRTG-PDSIRRGSQKIGVRPPQQKP-TTTNPFLRAMSYDEYQGSSSVTRHMLSAKDDEDKAAKLANDMKH-----DPKLRERRRRAMLHSFEAARQRPRHPDRRKAHLKPVHVAPVLPDFDTLGQAFVAIEFDKDDNLTHLERQREESEATDESERTFTVIPVGKSDL--NDRQIIACYTPSGHTIARRKHLREEDGPNADRDPKKIRYDDEETYDWIAEYAVRETKIGNGYKSRNTLARSCFAAVEYTKADNPKVGVVLFSRIDATWKLSKRPGTIE-KFGKPGLKLKRDNQMQPDEDFQRD 474          
BLAST of Ggra820.t1 vs. uniprot
Match: A0A7S3ECG8 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECG8_9RHOD)

HSP 1 Score: 74.3 bits (181), Expect = 9.390e-11
Identity = 87/314 (27.71%), Postives = 137/314 (43.63%), Query Frame = 0
Query:   44 KPQLPFSVRPRFRFDVPPPPMDPKMLLGTLSTASYAEPHFSELE-RNFRPSAIPSNPTHGLRVNLVDTQLYKAPARLTAEDMSLLETIMKGRSGGGLLNPRSGAPDKMRNPGMPPPPRKPETTTAPWMRRMAYDEYDRTAHKNVHAADLAAQMQEINREKEARLEKSRRERLMKS----FKQPSRNMRHPGRKMGNVRAVSAAPIYPDFLHMLRELVSVEVD---KDEILTVQERLRNNPEA-AEESLRTTATVSVAERSTTRGSQKYVACYTPTLKTLEKRKRRREESKPDEKQSSKKVCFGDKEDYQWVGEY 348
            KP+  F  +PR+ F  P   MD K++      + YA    S L+ ++ RP  I ++PTHG+RVNLVD   Y+        D   L           LL+P S A +K          R+  + +AP++R M YDEY       +   D +    +  RE    ++K  R+ L++     F+   +   HP  +  +++ V   P  PDF +   + V V  +   K+ +    ER  N  EA   E LR     +V        ++  ++ YTP    +EKR+++R+   PD      K    + EDY  V EY
Sbjct:   32 KPENDFLCQPRYSFTPPEAEMDLKLIDFEPDLSFYAPLETSALDLKHQRP--ILTDPTHGVRVNLVDLDEYREYQEGEGPDPEDLI----------LLDPESDANEKSF--------RRKTSGSAPFLRAMFYDEY------KIDKIDYSGAASKRQRE----VKKKTRDELLRDVLAEFQACKKKPVHPNSRKKHLKPVEITPFLPDFENYFIKYVLVHFEDDPKENVRPALERNLNRKEAMGAEDLREMVNTAVTLGRRGEDNEAVLSFYTPVDDEIEKRRKQRQT--PDNTNLPDKFGTANSEDYHLVKEY 313          
BLAST of Ggra820.t1 vs. uniprot
Match: A0A7S2ZJR4 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJR4_9RHOD)

HSP 1 Score: 67.8 bits (164), Expect = 6.760e-9
Identity = 78/287 (27.18%), Postives = 127/287 (44.25%), Query Frame = 0
Query:   44 KPQLPFSVRPRFRFDVPPPPMDPKMLLGTLSTASYAEPHFSELE-RNFRPSAIPSNPTHGLRVNLVDTQLYKAPARLTAEDMSLLETIMKGRSGGGLLNPRSGAPDKMRNPGMPPPPRKPETTTAPWMRRMAYDEYDRTAHKNVHAADLAAQMQEINREKEARLEKSRRERLMKS----FKQPSRNMRHPGRKMGNVRAVSAAPIYPDFLHMLRELVSVEVD---KDEILTVQERLRNNPEA-AEESLRTTATVSVAERSTTRGSQKYVACYTPTLKTLEKRKRRRE 321
            KP+  F  +PR+ F  P   MD K++      + YA    S L+ ++ RP  I ++PTHG+RVNLVD   Y+        D   L           LL+P S A +K          R+  + +AP++R M YDEY       +   D +    +  RE    ++K  R+ L++     F+   +   HP  +  +++ V   P  PDF +   + V V  +   K+ +    ER  N  EA   E LR     +V        ++  ++ YTP    +EKR+++R+
Sbjct:   32 KPENDFLCQPRYSFTPPEAEMDLKLIDFEPDLSFYAPLETSALDLKHQRP--ILTDPTHGVRVNLVDLDEYREYQEGEGPDPEDLI----------LLDPESDANEKSF--------RRKTSGSAPFLRAMFYDEY------KIDKIDYSGAASKRQRE----VKKKTRDELLRDVLAEFQACKKKPVHPNSRKKHLKPVEITPFLPDFENYFIKYVLVHFEDDPKENVRPALERNLNRKEAMGAEDLREMVNTAVTLGRRGEDNEAVLSFYTPVDDEIEKRRKQRQ 288          
The following BLAST results are available for this feature:
BLAST of Ggra820.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IRR61.990e-21370.59RNA polymerase II-associated factor 1-like n=1 Tax... [more]
R7Q0U12.000e-7739.24Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S3ECG89.390e-1127.71Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZJR46.760e-927.18Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 188..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 419..449
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..163
NoneNo IPR availablePANTHERPTHR23188:SF12RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOGcoord: 30..351
IPR007133RNA polymerase II associated factor Paf1PFAMPF03985Paf1coord: 51..349
e-value: 3.2E-24
score: 85.7
IPR007133RNA polymerase II associated factor Paf1PANTHERPTHR23188RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOGcoord: 30..351

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000906_piloncontigtig00000906_pilon:196376..197725 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra820.t1Ggra820.t1Gracilaria gracilis GNS1m malemRNAtig00000906_pilon 196376..197725 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra820.t1 ID=Ggra820.t1|Name=Ggra820.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=450bp
MSTPYEKLIRPGSQPSREKPRVPPPAQSATAAKKMLRRPARIEKPQLPFS
VRPRFRFDVPPPPMDPKMLLGTLSTASYAEPHFSELERNFRPSAIPSNPT
HGLRVNLVDTQLYKAPARLTAEDMSLLETIMKGRSGGGLLNPRSGAPDKM
RNPGMPPPPRKPETTTAPWMRRMAYDEYDRTAHKNVHAADLAAQMQEINR
EKEARLEKSRRERLMKSFKQPSRNMRHPGRKMGNVRAVSAAPIYPDFLHM
LRELVSVEVDKDEILTVQERLRNNPEAAEESLRTTATVSVAERSTTRGSQ
KYVACYTPTLKTLEKRKRRREESKPDEKQSSKKVCFGDKEDYQWVGEYSI
REGKFEDPRVSGVHGRSCFAISEHTISGGTARVVTAGRVGTIWKLSRRPQ
TSGIKLGKNGLRITLQPELDETNDDHVESMLSGTSTKRRAKVEPKETVR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007133RNA_pol_II-assoc_Paf1