Ggra820.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra820.t1
Unique NameGgra820.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000906_piloncontigtig00000906_pilon:196376..197725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703796.1
Preferred namePAF1
PFAMsPaf1
Max annot lvl2759|Eukaryota
KEGG rclassRC00080,RC00216,RC00242,RC00255
KEGG koko:K00294,ko:K11673,ko:K15174
KEGG ReactionR00245,R00707,R00708,R04444,R04445,R05051
KEGG Pathwayko00250,ko00330,ko01100,ko04011,map00250,map00330,map01100,map04011
GOsGO:0000018,GO:0000082,GO:0000083,GO:0000122,GO:0000183,GO:0000278,GO:0000414,GO:0000416,GO:0000428,GO:0000785,GO:0000981,GO:0000983,GO:0000988,GO:0000989,GO:0000993,GO:0001015,GO:0001076,GO:0001098,GO:0001099,GO:0001704,GO:0001706,GO:0001711,GO:0001932,GO:0001934,GO:0002237,GO:0002682,GO:0002683,GO:0003674,GO:0003682,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006289,GO:0006323,GO:0006325,GO:0006333,GO:0006342,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006360,GO:0006362,GO:0006364,GO:0006366,GO:0006368,GO:0006378,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007369,GO:0007492,GO:0007507,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009302,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009909,GO:0009910,GO:0009987,GO:0010033,GO:0010390,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016574,GO:0016584,GO:0016591,GO:0016593,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0022402,GO:0022607,GO:0022613,GO:0030054,GO:0030154,GO:0030880,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031399,GO:0031401,GO:0031440,GO:0031442,GO:0031497,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033182,GO:0033365,GO:0033523,GO:0033554,GO:0033993,GO:0034243,GO:0034470,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034728,GO:0035327,GO:0035987,GO:0036211,GO:0040029,GO:0042221,GO:0042254,GO:0042325,GO:0042327,GO:0043144,GO:0043170,GO:0043175,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043628,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0044877,GO:0045165,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045787,GO:0045814,GO:0045892,GO:0045893,GO:0045910,GO:0045934,GO:0045935,GO:0045937,GO:0045943,GO:0045944,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048583,GO:0048598,GO:0048646,GO:0048731,GO:0048831,GO:0048856,GO:0048869,GO:0050684,GO:0050685,GO:0050789,GO:0050793,GO:0050794,GO:0050815,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051219,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051569,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0060795,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0070727,GO:0070887,GO:0070911,GO:0071103,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071704,GO:0071824,GO:0071840,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090262,GO:0090304,GO:0097659,GO:0098727,GO:0098781,GO:0099122,GO:0140110,GO:1901360,GO:1901362,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1902806,GO:1902808,GO:1903047,GO:1903311,GO:1903313,GO:1903320,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1905269,GO:1990234,GO:1990269,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2000819,GO:2001020,GO:2001141,GO:2001163,GO:2001165,GO:2001166,GO:2001173,GO:2001207,GO:2001209,GO:2001252,GO:2001253,GO:2001255
Evalue6.7e-09
EggNOG OGsKOG2478@1|root,KOG2478@2759|Eukaryota
EC1.2.1.88
Descriptiontranscription elongation from RNA polymerase II promoter
COG categoryS
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra820Ggra820Gracilaria gracilis GNS1m malegenetig00000906_pilon 196376..197725 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra820.t1.stop1Ggra820.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000906_pilon 196376..196378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra820.t1.CDS1Ggra820.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000906_pilon 196376..197725 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra820.t1.exon1Ggra820.t1.exon1Gracilaria gracilis GNS1m maleexontig00000906_pilon 196376..197725 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra820.t1.start1Ggra820.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000906_pilon 197723..197725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra820.t1Ggra820.t1Gracilaria gracilis GNS1m malepolypeptidetig00000906_pilon 196376..197725 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra820.t1 ID=Ggra820.t1|Name=Ggra820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp
MSTPYEKLIRPGSQPSREKPRVPPPAQSATAAKKMLRRPARIEKPQLPFS
VRPRFRFDVPPPPMDPKMLLGTLSTASYAEPHFSELERNFRPSAIPSNPT
HGLRVNLVDTQLYKAPARLTAEDMSLLETIMKGRSGGGLLNPRSGAPDKM
RNPGMPPPPRKPETTTAPWMRRMAYDEYDRTAHKNVHAADLAAQMQEINR
EKEARLEKSRRERLMKSFKQPSRNMRHPGRKMGNVRAVSAAPIYPDFLHM
LRELVSVEVDKDEILTVQERLRNNPEAAEESLRTTATVSVAERSTTRGSQ
KYVACYTPTLKTLEKRKRRREESKPDEKQSSKKVCFGDKEDYQWVGEYSI
REGKFEDPRVSGVHGRSCFAISEHTISGGTARVVTAGRVGTIWKLSRRPQ
TSGIKLGKNGLRITLQPELDETNDDHVESMLSGTSTKRRAKVEPKETVR*
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spliced messenger RNA

>Ggra820.t1 ID=Ggra820.t1|Name=Ggra820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000906_pilon:196376..197725- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACGCCGTACGAGAAGCTGATTAGGCCCGGTTCTCAACCTTCGCG
GGAAAAGCCAAGAGTCCCACCACCTGCCCAATCGGCCACAGCTGCGAAGA
AAATGCTAAGAAGACCCGCTCGTATTGAAAAGCCGCAGCTACCGTTCAGC
GTCCGTCCTCGGTTTCGATTCGATGTTCCGCCACCGCCGATGGATCCAAA
GATGCTGCTCGGCACTTTGTCTACAGCTTCGTATGCCGAGCCACATTTTT
CTGAGCTCGAACGCAACTTCCGACCAAGCGCGATTCCTTCTAATCCGACT
CATGGGCTCCGCGTTAATCTCGTCGATACACAATTGTACAAAGCACCGGC
GAGGTTAACTGCAGAGGACATGTCTTTATTAGAAACTATCATGAAAGGTC
GTTCTGGAGGTGGTTTGCTCAACCCCAGAAGCGGTGCGCCCGACAAGATG
AGAAACCCAGGGATGCCACCACCTCCTCGTAAGCCAGAGACTACCACGGC
TCCTTGGATGAGACGAATGGCCTACGACGAATACGACCGAACTGCTCACA
AGAATGTTCATGCCGCAGATCTCGCAGCCCAGATGCAGGAAATAAACAGA
GAGAAAGAGGCGAGGTTGGAAAAGTCTCGCAGAGAGAGGTTGATGAAGTC
CTTCAAGCAACCCTCTCGTAATATGAGGCATCCTGGTCGAAAGATGGGAA
ACGTACGGGCTGTGAGTGCGGCTCCTATTTACCCTGACTTCCTTCACATG
TTGCGGGAGCTTGTGTCAGTTGAGGTTGACAAAGACGAGATATTGACTGT
ACAAGAACGGCTTAGAAACAATCCAGAGGCTGCAGAAGAGTCCCTGCGGA
CAACTGCAACGGTATCTGTTGCGGAGCGTTCCACAACTCGGGGATCCCAG
AAATATGTTGCCTGTTACACGCCGACCTTAAAAACACTCGAGAAACGAAA
GCGAAGGAGGGAGGAGTCGAAACCGGATGAGAAGCAGAGCAGTAAGAAAG
TTTGTTTTGGTGACAAAGAGGATTATCAATGGGTTGGGGAGTATTCAATA
CGAGAAGGCAAATTCGAGGATCCAAGAGTATCAGGAGTTCATGGTAGGTC
GTGTTTTGCAATATCGGAGCATACTATATCTGGAGGTACAGCAAGGGTCG
TTACCGCTGGTCGAGTTGGCACTATCTGGAAGCTTTCTCGGCGTCCGCAA
ACGAGCGGGATCAAGCTGGGGAAGAATGGTTTAAGGATTACTTTGCAACC
TGAACTAGACGAGACTAACGATGACCATGTCGAGTCAATGCTATCTGGGA
CTAGCACGAAGCGAAGGGCAAAGGTAGAACCTAAAGAGACGGTGCGGTGA
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protein sequence of Ggra820.t1

>Ggra820.t1 ID=Ggra820.t1|Name=Ggra820.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=450bp
MSTPYEKLIRPGSQPSREKPRVPPPAQSATAAKKMLRRPARIEKPQLPFS
VRPRFRFDVPPPPMDPKMLLGTLSTASYAEPHFSELERNFRPSAIPSNPT
HGLRVNLVDTQLYKAPARLTAEDMSLLETIMKGRSGGGLLNPRSGAPDKM
RNPGMPPPPRKPETTTAPWMRRMAYDEYDRTAHKNVHAADLAAQMQEINR
EKEARLEKSRRERLMKSFKQPSRNMRHPGRKMGNVRAVSAAPIYPDFLHM
LRELVSVEVDKDEILTVQERLRNNPEAAEESLRTTATVSVAERSTTRGSQ
KYVACYTPTLKTLEKRKRRREESKPDEKQSSKKVCFGDKEDYQWVGEYSI
REGKFEDPRVSGVHGRSCFAISEHTISGGTARVVTAGRVGTIWKLSRRPQ
TSGIKLGKNGLRITLQPELDETNDDHVESMLSGTSTKRRAKVEPKETVR*
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mRNA from alignment at tig00000906_pilon:196376..197725-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra820.t1 ID=Ggra820.t1|Name=Ggra820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000906_pilon:196376..197725- (Gracilaria gracilis GNS1m male)
ATGTCAACGCCGTACGAGAAGCTGATTAGGCCCGGTTCTCAACCTTCGCG
GGAAAAGCCAAGAGTCCCACCACCTGCCCAATCGGCCACAGCTGCGAAGA
AAATGCTAAGAAGACCCGCTCGTATTGAAAAGCCGCAGCTACCGTTCAGC
GTCCGTCCTCGGTTTCGATTCGATGTTCCGCCACCGCCGATGGATCCAAA
GATGCTGCTCGGCACTTTGTCTACAGCTTCGTATGCCGAGCCACATTTTT
CTGAGCTCGAACGCAACTTCCGACCAAGCGCGATTCCTTCTAATCCGACT
CATGGGCTCCGCGTTAATCTCGTCGATACACAATTGTACAAAGCACCGGC
GAGGTTAACTGCAGAGGACATGTCTTTATTAGAAACTATCATGAAAGGTC
GTTCTGGAGGTGGTTTGCTCAACCCCAGAAGCGGTGCGCCCGACAAGATG
AGAAACCCAGGGATGCCACCACCTCCTCGTAAGCCAGAGACTACCACGGC
TCCTTGGATGAGACGAATGGCCTACGACGAATACGACCGAACTGCTCACA
AGAATGTTCATGCCGCAGATCTCGCAGCCCAGATGCAGGAAATAAACAGA
GAGAAAGAGGCGAGGTTGGAAAAGTCTCGCAGAGAGAGGTTGATGAAGTC
CTTCAAGCAACCCTCTCGTAATATGAGGCATCCTGGTCGAAAGATGGGAA
ACGTACGGGCTGTGAGTGCGGCTCCTATTTACCCTGACTTCCTTCACATG
TTGCGGGAGCTTGTGTCAGTTGAGGTTGACAAAGACGAGATATTGACTGT
ACAAGAACGGCTTAGAAACAATCCAGAGGCTGCAGAAGAGTCCCTGCGGA
CAACTGCAACGGTATCTGTTGCGGAGCGTTCCACAACTCGGGGATCCCAG
AAATATGTTGCCTGTTACACGCCGACCTTAAAAACACTCGAGAAACGAAA
GCGAAGGAGGGAGGAGTCGAAACCGGATGAGAAGCAGAGCAGTAAGAAAG
TTTGTTTTGGTGACAAAGAGGATTATCAATGGGTTGGGGAGTATTCAATA
CGAGAAGGCAAATTCGAGGATCCAAGAGTATCAGGAGTTCATGGTAGGTC
GTGTTTTGCAATATCGGAGCATACTATATCTGGAGGTACAGCAAGGGTCG
TTACCGCTGGTCGAGTTGGCACTATCTGGAAGCTTTCTCGGCGTCCGCAA
ACGAGCGGGATCAAGCTGGGGAAGAATGGTTTAAGGATTACTTTGCAACC
TGAACTAGACGAGACTAACGATGACCATGTCGAGTCAATGCTATCTGGGA
CTAGCACGAAGCGAAGGGCAAAGGTAGAACCTAAAGAGACGGTGCGGTGA
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Coding sequence (CDS) from alignment at tig00000906_pilon:196376..197725-

>Ggra820.t1 ID=Ggra820.t1|Name=Ggra820.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00000906_pilon:196376..197725- (Gracilaria gracilis GNS1m male)
ATGTCAACGCCGTACGAGAAGCTGATTAGGCCCGGTTCTCAACCTTCGCG
GGAAAAGCCAAGAGTCCCACCACCTGCCCAATCGGCCACAGCTGCGAAGA
AAATGCTAAGAAGACCCGCTCGTATTGAAAAGCCGCAGCTACCGTTCAGC
GTCCGTCCTCGGTTTCGATTCGATGTTCCGCCACCGCCGATGGATCCAAA
GATGCTGCTCGGCACTTTGTCTACAGCTTCGTATGCCGAGCCACATTTTT
CTGAGCTCGAACGCAACTTCCGACCAAGCGCGATTCCTTCTAATCCGACT
CATGGGCTCCGCGTTAATCTCGTCGATACACAATTGTACAAAGCACCGGC
GAGGTTAACTGCAGAGGACATGTCTTTATTAGAAACTATCATGAAAGGTC
GTTCTGGAGGTGGTTTGCTCAACCCCAGAAGCGGTGCGCCCGACAAGATG
AGAAACCCAGGGATGCCACCACCTCCTCGTAAGCCAGAGACTACCACGGC
TCCTTGGATGAGACGAATGGCCTACGACGAATACGACCGAACTGCTCACA
AGAATGTTCATGCCGCAGATCTCGCAGCCCAGATGCAGGAAATAAACAGA
GAGAAAGAGGCGAGGTTGGAAAAGTCTCGCAGAGAGAGGTTGATGAAGTC
CTTCAAGCAACCCTCTCGTAATATGAGGCATCCTGGTCGAAAGATGGGAA
ACGTACGGGCTGTGAGTGCGGCTCCTATTTACCCTGACTTCCTTCACATG
TTGCGGGAGCTTGTGTCAGTTGAGGTTGACAAAGACGAGATATTGACTGT
ACAAGAACGGCTTAGAAACAATCCAGAGGCTGCAGAAGAGTCCCTGCGGA
CAACTGCAACGGTATCTGTTGCGGAGCGTTCCACAACTCGGGGATCCCAG
AAATATGTTGCCTGTTACACGCCGACCTTAAAAACACTCGAGAAACGAAA
GCGAAGGAGGGAGGAGTCGAAACCGGATGAGAAGCAGAGCAGTAAGAAAG
TTTGTTTTGGTGACAAAGAGGATTATCAATGGGTTGGGGAGTATTCAATA
CGAGAAGGCAAATTCGAGGATCCAAGAGTATCAGGAGTTCATGGTAGGTC
GTGTTTTGCAATATCGGAGCATACTATATCTGGAGGTACAGCAAGGGTCG
TTACCGCTGGTCGAGTTGGCACTATCTGGAAGCTTTCTCGGCGTCCGCAA
ACGAGCGGGATCAAGCTGGGGAAGAATGGTTTAAGGATTACTTTGCAACC
TGAACTAGACGAGACTAACGATGACCATGTCGAGTCAATGCTATCTGGGA
CTAGCACGAAGCGAAGGGCAAAGGTAGAACCTAAAGAGACGGTGCGGTGA
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