Ggra7943.t1 (polypeptide) Gracilaria gracilis GNS1m male
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Overview
Homology
BLAST of Ggra7943.t1 vs. uniprot
Match: R7Q1N9 (RPOL4c domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q1N9_CHOCR) HSP 1 Score: 138 bits (347), Expect = 1.320e-38 Identity = 73/132 (55.30%), Postives = 95/132 (71.97%), Query Frame = 0
Query: 35 IPPAEEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQEKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFEVWL 166
+ +EDA+ L+F EF E QPLF +EV LLK+H EK + + N +L SL++ ERFGQ+ T+ +I VR QL+ V P+LH FEVAQLASLMPK+ +EAKAIIPSLAA YDDDV+++ILKN + WL
Sbjct: 33 VRSGDEDAAKLEFGAEFD-EQKGQPLFTAEVLQLLKLHKEKNQ-HVQVNNRLLEPSLEHCERFGQIETTDAAIMVREQLQKVEPRLHPFEVAQLASLMPKDAEEAKAIIPSLAANYDDDVLNEILKNMDAWL 162
BLAST of Ggra7943.t1 vs. uniprot
Match: M1VIP7 (RNA polymerase II subunit n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VIP7_CYAM1) HSP 1 Score: 90.9 bits (224), Expect = 2.200e-20 Identity = 55/124 (44.35%), Postives = 71/124 (57.26%), Query Frame = 0
Query: 39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKV-HVEKQEKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKN 161
EE+A LKF F H QPL I EV LL+ E + L + KS Y ERF Q E + VR +LE +P+LH FE AQLA+L+P+ EAKAIIPSL + DDDV+ +L++
Sbjct: 8 EENAENLKFGELFGDNEHCQPLLICEVAELLRQKRAELPAELQSSLGPIFVKSEAYVERFNQFRSAEVAKVVRVRLER-HPELHPFERAQLANLLPETPAEAKAIIPSLKGKLDDDVLGQLLRD 130
BLAST of Ggra7943.t1 vs. uniprot
Match: A0A7M7RGR9 (RPOL4c domain-containing protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7RGR9_STRPU) HSP 1 Score: 90.1 bits (222), Expect = 5.140e-20 Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = 0
Query: 39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLL---KVHVEKQEKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
EEDAS LKF F A+ L ISEV LL K E QE+ +L+ V K+L+Y RF + E VR L+ PKLH+FE+A LA+L P+ +EAKA+IPSL R++DD ++++L+N +
Sbjct: 12 EEDASELKFPKVFE---QAETLLISEVQMLLQHRKQQNESQEEEQ-ELSEVFMKTLNYTGRFSRFKNRETIGDVRGLLQQQQPKLHKFELALLANLCPETAEEAKALIPSLEGRFEDDELTEVLENMQ 135
BLAST of Ggra7943.t1 vs. uniprot
Match: S4RJW7 (Polymerase (RNA) II (DNA directed) polypeptide D n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RJW7_PETMA) HSP 1 Score: 88.2 bits (217), Expect = 2.960e-19 Identity = 54/128 (42.19%), Postives = 81/128 (63.28%), Query Frame = 0
Query: 39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQEKRLGD---LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
EEDAS L+F+ EF +A+ L ISEV H+L H ++Q + D L+ + K+L+Y RF + K E +VR+ L + KLH+FE+A LA+L P+ +EAKA+IPSL R++DD + IL + +
Sbjct: 15 EEDASQLQFAKEFE---NAETLLISEV-HMLLEHRKQQNESAEDEQELSELFMKTLNYTGRFSRFTKRETIASVRSLL--LQKKLHKFELASLANLCPETAEEAKALIPSLEGRFEDDELQQILDDIQ 136
BLAST of Ggra7943.t1 vs. uniprot
Match: DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255839 (DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255839) HSP 1 Score: 86.7 bits (213), Expect = 9.780e-19 Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 0
Query: 39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLL---KVHVEKQEKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
EEDAS LKF EF A+ L ISEV LL K E QE+ +L+ V K+L Y ERF + E VR+ ++ +LH+FEVA LA+L P DEA+A++PSL R+DD+ + ++++N +
Sbjct: 8 EEDASELKFPKEFE---QAETLLISEVRMLLEHRKTQNENQEEEQ-ELSEVFMKTLQYTERFSRFKNRETIADVRSLMK--QKQLHKFEVASLANLCPDTADEARALVPSLEGRFDDEDLQEMMENIQ 129
BLAST of Ggra7943.t1 vs. uniprot
Match: A0A293LJQ5 (RPOL4c domain-containing protein (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A293LJQ5_ORNER) HSP 1 Score: 86.7 bits (213), Expect = 1.200e-18 Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0
Query: 35 IPPAEEDASTLKFSYEFTLEGHAQPLFISEVGHLL---KVHVEKQEKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKN 161
I EEDAS L+F EF +A+ L ISEV LL K E E+ +L+ V K+L+Y +RF ++ E AVR L KLH+FE+AQLA+L P +EAKA+IPSL R++DD + IL++
Sbjct: 12 IEQVEEDASELQFPKEFE---NAESLLISEVNMLLEHRKTQNENAEEEQ-ELSEVFTKTLNYCQRFSRIKNRETIAAVRNLL--TQKKLHKFELAQLANLCPDNPEEAKALIPSLEGRFEDDDLRQILED 135
BLAST of Ggra7943.t1 vs. uniprot
Match: DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B09510 (DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B09510) HSP 1 Score: 86.7 bits (213), Expect = 1.260e-18 Identity = 54/132 (40.91%), Postives = 82/132 (62.12%), Query Frame = 0
Query: 35 IPPAEEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQEKRLGD---LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
+ EEDAS L+F EF +A+ L ISEV H+L H ++Q + + L+ V K+LDY ++F + E AVR+ L + KLH+FE+AQLA+L P+ +EAKA+IPSL R++D+ + IL + +
Sbjct: 11 LEQVEEDASELQFPKEFE---NAETLLISEV-HMLLEHRKQQNESAEEEQELSEVFLKTLDYCQQFSRYKNRETIAAVRSLL--MQKKLHKFELAQLANLAPETPEEAKALIPSLEGRFEDEELRQILDDIQ 136
BLAST of Ggra7943.t1 vs. uniprot
Match: A0A1I7SC53 ((pine wood nematode) hypothetical protein n=2 Tax=Bursaphelenchus TaxID=6324 RepID=A0A1I7SC53_BURXY) HSP 1 Score: 85.5 bits (210), Expect = 2.970e-18 Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 0
Query: 39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQ---EKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKN 161
EEDA+ LKF EF + G L ISEV LL H KQ ++ + D++ ++L+YA RF + E AVR N +LH+FEVAQLA+L P+ +EAKA+IPSL + +DD + D+LK+
Sbjct: 9 EEDAAELKFPKEFEVVG-CDALMISEV-FLLLDHRRKQSEEKEEIEDMSEAFLQTLNYARRFSKFKSRETIRAVRVIFTGRN-QLHKFEVAQLANLCPETAEEAKALIPSLENKMEDDELEDLLKS 131
BLAST of Ggra7943.t1 vs. uniprot
Match: T1J3Q6 (RPOL4c domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J3Q6_STRMM) HSP 1 Score: 85.5 bits (210), Expect = 3.200e-18 Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 0
Query: 39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQEKRLGD---LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
EEDAS L+F EF +A+ L ISEV H+L H + Q + + L+ V K+L+Y +RF + E AVR+ L KLH+FE+AQLA+L P +EAKA++PSL R+++D +S IL + +
Sbjct: 14 EEDASELQFPKEFE---NAETLLISEV-HMLLDHRKTQNESAEEEQELSDVFMKTLNYTQRFSRFKNRETISAVRSLL--TQKKLHKFELAQLANLCPDNPEEAKALVPSLEGRFEEDELSQILDDIQ 135
BLAST of Ggra7943.t1 vs. uniprot
Match: DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D388 (DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D388) HSP 1 Score: 85.5 bits (210), Expect = 3.200e-18 Identity = 54/135 (40.00%), Postives = 79/135 (58.52%), Query Frame = 0
Query: 33 ITIPP--AEEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQEKRLGD--LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
+T+P EEDAS+L+F EF +A+ L ISEV LL+ E + L+ V K+ +Y ERF + E AVR L+ KLH+FE+A +A+L P+ +EAKA+IPSL R++DD + IL + +
Sbjct: 6 VTLPNDLIEEDASSLQFPKEFE---NAETLLISEVFMLLEHRKSNNENAEDEQELSDVFMKTFNYTERFSKFKNRETIAAVRKSLQ--EKKLHKFELASIANLCPENAEEAKALIPSLEGRFEDDELQQILDDIQ 135 The following BLAST results are available for this feature:
BLAST of Ggra7943.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Ggra7943.t1 ID=Ggra7943.t1|Name=Ggra7943.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=167bpback to top |