Ggra7943.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7943.t1
Unique NameGgra7943.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length167
Homology
BLAST of Ggra7943.t1 vs. uniprot
Match: R7Q1N9 (RPOL4c domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q1N9_CHOCR)

HSP 1 Score: 138 bits (347), Expect = 1.320e-38
Identity = 73/132 (55.30%), Postives = 95/132 (71.97%), Query Frame = 0
Query:   35 IPPAEEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQEKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFEVWL 166
            +   +EDA+ L+F  EF  E   QPLF +EV  LLK+H EK +  +   N +L  SL++ ERFGQ+  T+ +I VR QL+ V P+LH FEVAQLASLMPK+ +EAKAIIPSLAA YDDDV+++ILKN + WL
Sbjct:   33 VRSGDEDAAKLEFGAEFD-EQKGQPLFTAEVLQLLKLHKEKNQ-HVQVNNRLLEPSLEHCERFGQIETTDAAIMVREQLQKVEPRLHPFEVAQLASLMPKDAEEAKAIIPSLAANYDDDVLNEILKNMDAWL 162          
BLAST of Ggra7943.t1 vs. uniprot
Match: M1VIP7 (RNA polymerase II subunit n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VIP7_CYAM1)

HSP 1 Score: 90.9 bits (224), Expect = 2.200e-20
Identity = 55/124 (44.35%), Postives = 71/124 (57.26%), Query Frame = 0
Query:   39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKV-HVEKQEKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKN 161
            EE+A  LKF   F    H QPL I EV  LL+    E   +    L  +  KS  Y ERF Q    E +  VR +LE  +P+LH FE AQLA+L+P+   EAKAIIPSL  + DDDV+  +L++
Sbjct:    8 EENAENLKFGELFGDNEHCQPLLICEVAELLRQKRAELPAELQSSLGPIFVKSEAYVERFNQFRSAEVAKVVRVRLER-HPELHPFERAQLANLLPETPAEAKAIIPSLKGKLDDDVLGQLLRD 130          
BLAST of Ggra7943.t1 vs. uniprot
Match: A0A7M7RGR9 (RPOL4c domain-containing protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7RGR9_STRPU)

HSP 1 Score: 90.1 bits (222), Expect = 5.140e-20
Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = 0
Query:   39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLL---KVHVEKQEKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
            EEDAS LKF   F     A+ L ISEV  LL   K   E QE+   +L+ V  K+L+Y  RF +    E    VR  L+   PKLH+FE+A LA+L P+  +EAKA+IPSL  R++DD ++++L+N +
Sbjct:   12 EEDASELKFPKVFE---QAETLLISEVQMLLQHRKQQNESQEEEQ-ELSEVFMKTLNYTGRFSRFKNRETIGDVRGLLQQQQPKLHKFELALLANLCPETAEEAKALIPSLEGRFEDDELTEVLENMQ 135          
BLAST of Ggra7943.t1 vs. uniprot
Match: S4RJW7 (Polymerase (RNA) II (DNA directed) polypeptide D n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RJW7_PETMA)

HSP 1 Score: 88.2 bits (217), Expect = 2.960e-19
Identity = 54/128 (42.19%), Postives = 81/128 (63.28%), Query Frame = 0
Query:   39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQEKRLGD---LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
            EEDAS L+F+ EF    +A+ L ISEV H+L  H ++Q +   D   L+ +  K+L+Y  RF +  K E   +VR+ L  +  KLH+FE+A LA+L P+  +EAKA+IPSL  R++DD +  IL + +
Sbjct:   15 EEDASQLQFAKEFE---NAETLLISEV-HMLLEHRKQQNESAEDEQELSELFMKTLNYTGRFSRFTKRETIASVRSLL--LQKKLHKFELASLANLCPETAEEAKALIPSLEGRFEDDELQQILDDIQ 136          
BLAST of Ggra7943.t1 vs. uniprot
Match: DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255839 (DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255839)

HSP 1 Score: 86.7 bits (213), Expect = 9.780e-19
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 0
Query:   39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLL---KVHVEKQEKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
            EEDAS LKF  EF     A+ L ISEV  LL   K   E QE+   +L+ V  K+L Y ERF +    E    VR+ ++    +LH+FEVA LA+L P   DEA+A++PSL  R+DD+ + ++++N +
Sbjct:    8 EEDASELKFPKEFE---QAETLLISEVRMLLEHRKTQNENQEEEQ-ELSEVFMKTLQYTERFSRFKNRETIADVRSLMK--QKQLHKFEVASLANLCPDTADEARALVPSLEGRFDDEDLQEMMENIQ 129          
BLAST of Ggra7943.t1 vs. uniprot
Match: A0A293LJQ5 (RPOL4c domain-containing protein (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A293LJQ5_ORNER)

HSP 1 Score: 86.7 bits (213), Expect = 1.200e-18
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0
Query:   35 IPPAEEDASTLKFSYEFTLEGHAQPLFISEVGHLL---KVHVEKQEKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKN 161
            I   EEDAS L+F  EF    +A+ L ISEV  LL   K   E  E+   +L+ V  K+L+Y +RF ++   E   AVR  L     KLH+FE+AQLA+L P   +EAKA+IPSL  R++DD +  IL++
Sbjct:   12 IEQVEEDASELQFPKEFE---NAESLLISEVNMLLEHRKTQNENAEEEQ-ELSEVFTKTLNYCQRFSRIKNRETIAAVRNLL--TQKKLHKFELAQLANLCPDNPEEAKALIPSLEGRFEDDDLRQILED 135          
BLAST of Ggra7943.t1 vs. uniprot
Match: DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B09510 (DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B09510)

HSP 1 Score: 86.7 bits (213), Expect = 1.260e-18
Identity = 54/132 (40.91%), Postives = 82/132 (62.12%), Query Frame = 0
Query:   35 IPPAEEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQEKRLGD---LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
            +   EEDAS L+F  EF    +A+ L ISEV H+L  H ++Q +   +   L+ V  K+LDY ++F +    E   AVR+ L  +  KLH+FE+AQLA+L P+  +EAKA+IPSL  R++D+ +  IL + +
Sbjct:   11 LEQVEEDASELQFPKEFE---NAETLLISEV-HMLLEHRKQQNESAEEEQELSEVFLKTLDYCQQFSRYKNRETIAAVRSLL--MQKKLHKFELAQLANLAPETPEEAKALIPSLEGRFEDEELRQILDDIQ 136          
BLAST of Ggra7943.t1 vs. uniprot
Match: A0A1I7SC53 ((pine wood nematode) hypothetical protein n=2 Tax=Bursaphelenchus TaxID=6324 RepID=A0A1I7SC53_BURXY)

HSP 1 Score: 85.5 bits (210), Expect = 2.970e-18
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 0
Query:   39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQ---EKRLGDLNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKN 161
            EEDA+ LKF  EF + G    L ISEV  LL  H  KQ   ++ + D++    ++L+YA RF +    E   AVR      N +LH+FEVAQLA+L P+  +EAKA+IPSL  + +DD + D+LK+
Sbjct:    9 EEDAAELKFPKEFEVVG-CDALMISEV-FLLLDHRRKQSEEKEEIEDMSEAFLQTLNYARRFSKFKSRETIRAVRVIFTGRN-QLHKFEVAQLANLCPETAEEAKALIPSLENKMEDDELEDLLKS 131          
BLAST of Ggra7943.t1 vs. uniprot
Match: T1J3Q6 (RPOL4c domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J3Q6_STRMM)

HSP 1 Score: 85.5 bits (210), Expect = 3.200e-18
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 0
Query:   39 EEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQEKRLGD---LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
            EEDAS L+F  EF    +A+ L ISEV H+L  H + Q +   +   L+ V  K+L+Y +RF +    E   AVR+ L     KLH+FE+AQLA+L P   +EAKA++PSL  R+++D +S IL + +
Sbjct:   14 EEDASELQFPKEFE---NAETLLISEV-HMLLDHRKTQNESAEEEQELSDVFMKTLNYTQRFSRFKNRETISAVRSLL--TQKKLHKFELAQLANLCPDNPEEAKALVPSLEGRFEEDELSQILDDIQ 135          
BLAST of Ggra7943.t1 vs. uniprot
Match: DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D388 (DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D388)

HSP 1 Score: 85.5 bits (210), Expect = 3.200e-18
Identity = 54/135 (40.00%), Postives = 79/135 (58.52%), Query Frame = 0
Query:   33 ITIPP--AEEDASTLKFSYEFTLEGHAQPLFISEVGHLLKVHVEKQEKRLGD--LNVVLRKSLDYAERFGQLAKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARYDDDVISDILKNFE 163
            +T+P    EEDAS+L+F  EF    +A+ L ISEV  LL+      E    +  L+ V  K+ +Y ERF +    E   AVR  L+    KLH+FE+A +A+L P+  +EAKA+IPSL  R++DD +  IL + +
Sbjct:    6 VTLPNDLIEEDASSLQFPKEFE---NAETLLISEVFMLLEHRKSNNENAEDEQELSDVFMKTFNYTERFSKFKNRETIAAVRKSLQ--EKKLHKFELASIANLCPENAEEAKALIPSLEGRFEDDELQQILDDIQ 135          
The following BLAST results are available for this feature:
BLAST of Ggra7943.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q1N91.320e-3855.30RPOL4c domain-containing protein n=1 Tax=Chondrus ... [more]
M1VIP72.200e-2044.35RNA polymerase II subunit n=1 Tax=Cyanidioschyzon ... [more]
A0A7M7RGR95.140e-2043.75RPOL4c domain-containing protein n=2 Tax=Echinacea... [more]
S4RJW72.960e-1942.19Polymerase (RNA) II (DNA directed) polypeptide D n... [more]
DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142558399.780e-1942.19DNA-directed RNA polymerase II subunit RPB4-like n... [more]
A0A293LJQ51.200e-1843.85RPOL4c domain-containing protein (Fragment) n=2 Ta... [more]
DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B095101.260e-1840.91DNA-directed RNA polymerase II subunit RPB4-like n... [more]
A0A1I7SC532.970e-1843.65(pine wood nematode) hypothetical protein n=2 Tax=... [more]
T1J3Q63.200e-1842.19RPOL4c domain-containing protein n=1 Tax=Strigamia... [more]
DNA-directed RNA polymerase II subunit RPB4-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D3883.200e-1840.00DNA-directed RNA polymerase II subunit RPB4-like n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006590RNA polymerase Rpb4/RPC9, coreSMARTSM00657rpol4neu2coord: 52..163
e-value: 5.0E-11
score: 52.6
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 37..164
e-value: 1.2E-29
score: 104.8
IPR005574RNA polymerase subunit Rpb4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 74..160
e-value: 6.1E-17
score: 62.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR21297:SF0DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4coord: 31..161
IPR045222DNA-directed RNA polymerase II subunit Rpb4-likePANTHERPTHR21297DNA-DIRECTED RNA POLYMERASE IIcoord: 31..161
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 37..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:492041..492541 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7943.t1Ggra7943.t1Gracilaria gracilis GNS1m malemRNAtig00000073_pilon 492041..492541 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7943.t1 ID=Ggra7943.t1|Name=Ggra7943.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=167bp
MIKPEDEIVNPQATAENGENNKEGEEEEEEEFITIPPAEEDASTLKFSYE
FTLEGHAQPLFISEVGHLLKVHVEKQEKRLGDLNVVLRKSLDYAERFGQL
AKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARY
DDDVISDILKNFEVWL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006590RNA_pol_Rpb4/RPC9_core
IPR038324Rpb4/RPC9_sf
IPR005574Rpb4/RPC9
IPR045222Rpb4-like
IPR010997HRDC-like_sf