Ggra7943.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7943.t1
Unique NameGgra7943.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:492041..492541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT583CT
Preferred namePOLR2D
PFAMsRNA_pol_Rpb4
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03012,ko:K11314
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
GOsGO:0000288,GO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0000932,GO:0000956,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005694,GO:0005700,GO:0005705,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009266,GO:0009301,GO:0009408,GO:0009452,GO:0009628,GO:0009719,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031503,GO:0031974,GO:0031981,GO:0031990,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034062,GO:0034248,GO:0034250,GO:0034402,GO:0034605,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035770,GO:0036260,GO:0036464,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045948,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0071166,GO:0071310,GO:0071363,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098687,GO:0098781,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1902494,GO:1990234,GO:1990904,GO:2000112
Evalue6.01e-20
EggNOG OGsCOG5250@1|root,KOG2351@2759|Eukaryota
Descriptionrecruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7943Ggra7943Gracilaria gracilis GNS1m malegenetig00000073_pilon 492041..492541 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7943.t1.stop1Ggra7943.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 492041..492043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7943.t1.CDS1Ggra7943.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 492041..492541 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7943.t1.exon1Ggra7943.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 492041..492541 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7943.t1.start1Ggra7943.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 492539..492541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7943.t1Ggra7943.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 492041..492541 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7943.t1 ID=Ggra7943.t1|Name=Ggra7943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=167bp
MIKPEDEIVNPQATAENGENNKEGEEEEEEEFITIPPAEEDASTLKFSYE
FTLEGHAQPLFISEVGHLLKVHVEKQEKRLGDLNVVLRKSLDYAERFGQL
AKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARY
DDDVISDILKNFEVWL*
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spliced messenger RNA

>Ggra7943.t1 ID=Ggra7943.t1|Name=Ggra7943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000073_pilon:492041..492541- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAAGCCAGAGGACGAAATCGTAAACCCTCAAGCGACGGCGGAAAA
CGGTGAGAACAATAAGGAAGGTGAAGAAGAGGAGGAAGAAGAATTTATTA
CCATTCCACCTGCCGAGGAGGACGCATCCACCCTCAAGTTTAGCTATGAA
TTCACCCTTGAAGGTCATGCGCAGCCGTTGTTTATCTCTGAAGTGGGGCA
TCTGCTCAAGGTGCATGTAGAAAAGCAAGAGAAGAGATTAGGGGATCTCA
ATGTTGTACTTCGGAAATCCCTCGATTATGCGGAACGGTTCGGGCAACTT
GCAAAGACGGAACAATCAATCGCTGTGCGTGCGCAACTTGAAGCAGTAAA
CCCAAAGCTTCATGAGTTTGAAGTTGCTCAGCTCGCCAGTTTAATGCCGA
AAGAGGTCGATGAGGCGAAGGCTATTATCCCAAGCCTTGCTGCTCGCTAT
GATGATGATGTAATTTCTGACATTCTTAAGAACTTTGAGGTTTGGTTGTA
G
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protein sequence of Ggra7943.t1

>Ggra7943.t1 ID=Ggra7943.t1|Name=Ggra7943.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=167bp
MIKPEDEIVNPQATAENGENNKEGEEEEEEEFITIPPAEEDASTLKFSYE
FTLEGHAQPLFISEVGHLLKVHVEKQEKRLGDLNVVLRKSLDYAERFGQL
AKTEQSIAVRAQLEAVNPKLHEFEVAQLASLMPKEVDEAKAIIPSLAARY
DDDVISDILKNFEVWL*
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mRNA from alignment at tig00000073_pilon:492041..492541-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7943.t1 ID=Ggra7943.t1|Name=Ggra7943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000073_pilon:492041..492541- (Gracilaria gracilis GNS1m male)
ATGATTAAGCCAGAGGACGAAATCGTAAACCCTCAAGCGACGGCGGAAAA
CGGTGAGAACAATAAGGAAGGTGAAGAAGAGGAGGAAGAAGAATTTATTA
CCATTCCACCTGCCGAGGAGGACGCATCCACCCTCAAGTTTAGCTATGAA
TTCACCCTTGAAGGTCATGCGCAGCCGTTGTTTATCTCTGAAGTGGGGCA
TCTGCTCAAGGTGCATGTAGAAAAGCAAGAGAAGAGATTAGGGGATCTCA
ATGTTGTACTTCGGAAATCCCTCGATTATGCGGAACGGTTCGGGCAACTT
GCAAAGACGGAACAATCAATCGCTGTGCGTGCGCAACTTGAAGCAGTAAA
CCCAAAGCTTCATGAGTTTGAAGTTGCTCAGCTCGCCAGTTTAATGCCGA
AAGAGGTCGATGAGGCGAAGGCTATTATCCCAAGCCTTGCTGCTCGCTAT
GATGATGATGTAATTTCTGACATTCTTAAGAACTTTGAGGTTTGGTTGTA
G
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Coding sequence (CDS) from alignment at tig00000073_pilon:492041..492541-

>Ggra7943.t1 ID=Ggra7943.t1|Name=Ggra7943.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=501bp|location=Sequence derived from alignment at tig00000073_pilon:492041..492541- (Gracilaria gracilis GNS1m male)
ATGATTAAGCCAGAGGACGAAATCGTAAACCCTCAAGCGACGGCGGAAAA
CGGTGAGAACAATAAGGAAGGTGAAGAAGAGGAGGAAGAAGAATTTATTA
CCATTCCACCTGCCGAGGAGGACGCATCCACCCTCAAGTTTAGCTATGAA
TTCACCCTTGAAGGTCATGCGCAGCCGTTGTTTATCTCTGAAGTGGGGCA
TCTGCTCAAGGTGCATGTAGAAAAGCAAGAGAAGAGATTAGGGGATCTCA
ATGTTGTACTTCGGAAATCCCTCGATTATGCGGAACGGTTCGGGCAACTT
GCAAAGACGGAACAATCAATCGCTGTGCGTGCGCAACTTGAAGCAGTAAA
CCCAAAGCTTCATGAGTTTGAAGTTGCTCAGCTCGCCAGTTTAATGCCGA
AAGAGGTCGATGAGGCGAAGGCTATTATCCCAAGCCTTGCTGCTCGCTAT
GATGATGATGTAATTTCTGACATTCTTAAGAACTTTGAGGTTTGGTTGTA
G
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