Ggra7915.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra7915.t1
Unique Name	Ggra7915.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	109

Homology

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BLAST of Ggra7915.t1 vs. uniprot
Match: A0A2V3J546 (Cytochrome c n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J546_9FLOR)

HSP 1 Score: 212 bits (539), Expect = 1.550e-69
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 0

Query:    1 MGAPGGDVNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLIAFLKANTQ 108
            M  P G+V KGAK+FKTKCSQCHTYE+GG TKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGD+TLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLI+FLKANTQ
Sbjct:    1 MAVPDGNVAKGAKIFKTKCSQCHTYEKGGGTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDETLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLISFLKANTQ 108

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BLAST of Ggra7915.t1 vs. uniprot
Match: R7QDE3 (Similar to cytochrome c (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDE3_CHOCR)

HSP 1 Score: 192 bits (487), Expect = 1.610e-61
Identity = 87/107 (81.31%), Postives = 97/107 (90.65%), Query Frame = 0

Query:    1 MGAPGGDVNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLIAFLKANT 107
            MG P G + KGAK+FKTKCSQCHTY+QGG TKQGPNLWGLFGR +G+V+GFAYTAANKNSGIIW DQTLF+YLLNPK+YIKGTKMVFAGLKKE+DR DLI FLK +T
Sbjct:    7 MGIPAGRIEKGAKIFKTKCSQCHTYDQGGGTKQGPNLWGLFGRQSGSVEGFAYTAANKNSGIIWSDQTLFEYLLNPKRYIKGTKMVFAGLKKEQDRADLIEFLKTHT 113

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BLAST of Ggra7915.t1 vs. uniprot
Match: M1VHH6 (Similar to cytochrome c n=2 Tax=Cyanidiaceae TaxID=265316 RepID=M1VHH6_CYAM1)

HSP 1 Score: 171 bits (432), Expect = 3.450e-53
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 0

Query:    4 PGGDVNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLIAFLKANT 107
            P GD ++G K+FKTKCSQCHTYE+GG TKQGPNL GLFGR AG+V GFAYTAANKNSG++W D+TLF+YL NPKKYI GTKMVFAGLKK ++R DLIAFLK  T
Sbjct:    5 PEGDASRGEKIFKTKCSQCHTYEKGGPTKQGPNLHGLFGRPAGSVPGFAYTAANKNSGVVWKDETLFEYLENPKKYIPGTKMVFAGLKKPQERADLIAFLKKAT 108

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BLAST of Ggra7915.t1 vs. uniprot
Match: A0A7S3EMV1 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EMV1_9RHOD)

HSP 1 Score: 172 bits (435), Expect = 1.100e-52
Identity = 80/103 (77.67%), Postives = 90/103 (87.38%), Query Frame = 0

Query:    5 GGDVNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLIAFLKANT 107
            GGD+ KG KLFKTKCSQCHTY++GG TKQGPNL GLFGR +G+V+GF+YTAANKNSGI+WGD TLF+YL NPKK I GTKMVFAGLKKE +R DLIAFLK  T
Sbjct:   76 GGDLAKGEKLFKTKCSQCHTYDKGGMTKQGPNLHGLFGRQSGSVEGFSYTAANKNSGILWGDDTLFEYLKNPKKMIPGTKMVFAGLKKESERRDLIAFLKKVT 178

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BLAST of Ggra7915.t1 vs. uniprot
Match: C1EDX4 (Cytochrome c domain-containing protein n=8 Tax=Mamiellales TaxID=13792 RepID=C1EDX4_MICCC)

HSP 1 Score: 167 bits (422), Expect = 1.230e-51
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = 0

Query:    3 APGGDVNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLIAFLKA 105
            AP GD  KGAK+FKTKC+QCH  E GG  KQGPNL GLFGR +GT +GFAY+AANKN G+ WG++TL+DYLLNPKKYI GTKMVFAGLKK +DR DLIA+LKA
Sbjct:    7 APAGDAEKGAKIFKTKCAQCHVAESGGGHKQGPNLGGLFGRVSGTTEGFAYSAANKNKGVKWGEETLYDYLLNPKKYIPGTKMVFAGLKKPQDRADLIAYLKA 109

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BLAST of Ggra7915.t1 vs. uniprot
Match: A0A5A8CS41 (Cytochrome c domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CS41_CAFRO)

HSP 1 Score: 165 bits (418), Expect = 3.780e-51
Identity = 73/100 (73.00%), Postives = 87/100 (87.00%), Query Frame = 0

Query:    8 VNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLIAFLKANT 107
            V  GAK+FKTKC+QCHT E+GG+TKQGPNLWG+ GR AGTV G+AY+ ANK SG+ WG+ TLF+YL NPKKYIKGTKM+FAGLKKE DR+DLIA+LK +T
Sbjct:    3 VANGAKIFKTKCAQCHTVEEGGATKQGPNLWGIIGRVAGTVPGYAYSTANKTSGVTWGEDTLFEYLKNPKKYIKGTKMIFAGLKKEGDRNDLIAYLKDST 102

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BLAST of Ggra7915.t1 vs. uniprot
Match: A0A1Z5JXF2 (Cytochrome c n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JXF2_FISSO)

HSP 1 Score: 165 bits (418), Expect = 1.100e-50
Identity = 75/96 (78.12%), Postives = 86/96 (89.58%), Query Frame = 0

Query:   10 KGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLIAFLKA 105
            KGAK+FKTKCSQCHT E+GGS KQGPNL+G FGR +G  DG++Y+AANK SGIIWG+ TLF+YL NPKKYIKGTKM+FAGLKKEKDR DLIA+LKA
Sbjct:   38 KGAKIFKTKCSQCHTVEEGGSHKQGPNLYGFFGRQSGQADGYSYSAANKKSGIIWGEDTLFEYLENPKKYIKGTKMIFAGLKKEKDRQDLIAYLKA 133

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BLAST of Ggra7915.t1 vs. uniprot
Match: A0A7S1XIX6 (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XIX6_9RHOD)

HSP 1 Score: 164 bits (414), Expect = 6.320e-50
Identity = 78/102 (76.47%), Postives = 85/102 (83.33%), Query Frame = 0

Query:    6 GDVNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLIAFLKANT 107
            G+  KGAKLFKTKCSQCHTYE G   KQGPNL GLFGR +GTV+GF+YTAANKNSGI W   TLF+YL NPKKYI GTKMVFAGLKKE++R DLIAFLK  T
Sbjct:   46 GNEEKGAKLFKTKCSQCHTYEAGAPAKQGPNLSGLFGRQSGTVEGFSYTAANKNSGITWNQDTLFEYLENPKKYIPGTKMVFAGLKKEQERADLIAFLKQAT 147

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BLAST of Ggra7915.t1 vs. uniprot
Match: A4RW27 (Cytochrome c domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RW27_OSTLU)

HSP 1 Score: 162 bits (410), Expect = 8.300e-50
Identity = 73/106 (68.87%), Postives = 88/106 (83.02%), Query Frame = 0

Query:    3 APGGDVNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLIAFLKANTQ 108
            AP G+  KGAK+FKTKC+QCH  E+GG  KQGPNL GLFGR +GT +GF+Y+AANKN G+ W + TL+DYLLNPKKYI GTKMVFAGLKK +DR DLIA+LK +T+
Sbjct:    7 APAGNAAKGAKIFKTKCAQCHVAEKGGGHKQGPNLGGLFGRVSGTTEGFSYSAANKNKGVTWSENTLYDYLLNPKKYIPGTKMVFAGLKKPEDRADLIAYLKESTK 112

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BLAST of Ggra7915.t1 vs. uniprot
Match: A0A061RYV8 (Cytochrome c n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RYV8_9CHLO)

HSP 1 Score: 162 bits (410), Expect = 8.300e-50
Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = 0

Query:    3 APGGDVNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDGFAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLIAFLKANT 107
            AP GD  KG K+FKTKC+QCH  E GG  KQGPNL GLFGRT+GT +GFAY+ ANK S I+WG+ TL+DYLLNPKKYI GTKMVFAGLKK +DR DLIA+LK  T
Sbjct:    7 APAGDAAKGEKIFKTKCAQCHVAEAGGGHKQGPNLGGLFGRTSGTTEGFAYSKANKESAIVWGENTLYDYLLNPKKYIPGTKMVFAGLKKPQDRADLIAYLKQAT 111

The following BLAST results are available for this feature:

BLAST of Ggra7915.t1 vs. uniprot

BLAST of Ggra7915.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3J546	1.550e-69	90.74	Cytochrome c n=1 Tax=Gracilariopsis chorda TaxID=4...	[more]
R7QDE3	1.610e-61	81.31	Similar to cytochrome c (Fragment) n=1 Tax=Chondru...	[more]
M1VHH6	3.450e-53	75.96	Similar to cytochrome c n=2 Tax=Cyanidiaceae TaxID...	[more]
A0A7S3EMV1	1.100e-52	77.67	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
C1EDX4	1.230e-51	73.79	Cytochrome c domain-containing protein n=8 Tax=Mam...	[more]
A0A5A8CS41	3.780e-51	73.00	Cytochrome c domain-containing protein n=2 Tax=Caf...	[more]
A0A1Z5JXF2	1.100e-50	78.13	Cytochrome c n=1 Tax=Fistulifera solaris TaxID=151...	[more]
A0A7S1XIX6	6.320e-50	76.47	Hypothetical protein n=1 Tax=Erythrolobus australi...	[more]
A4RW27	8.300e-50	68.87	Cytochrome c domain-containing protein n=1 Tax=Ost...	[more]
A0A061RYV8	8.300e-50	71.43	Cytochrome c n=1 Tax=Tetraselmis sp. GSL018 TaxID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002327	Cytochrome c, class IA/ IB	PRINTS	PR00604	CYTCHRMECIAB	coord: 31..46 score: 65.71 coord: 18..25 score: 66.94 coord: 47..57 score: 53.19 coord: 61..77 score: 58.38 coord: 80..90 score: 75.28 coord: 97..105 score: 58.36
IPR002327	Cytochrome c, class IA/ IB	PANTHER	PTHR11961	CYTOCHROME C	coord: 3..107
IPR009056	Cytochrome c-like domain	PFAM	PF00034	Cytochrom_C	coord: 9..104 e-value: 2.8E-11 score: 44.3
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 6..107 score: 14.662157
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 2..106 e-value: 2.1E-42 score: 146.4
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 5..104
None	No IPR available	PANTHER	PTHR11961:SF32	CYTOCHROME C	coord: 3..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:428959..429451 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7915.t1	Ggra7915.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000073_pilon 428959..429451 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra7915.t1 ID=Ggra7915.t1|Name=Ggra7915.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=109bp
MGAPGGDVNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDG
FAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLI
AFLKANTQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002327	Cyt_c_1A/1B
IPR009056	Cyt_c-like_dom
IPR036909	Cyt_c-like_dom_sf