Ggra7887.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra7887.t1
Unique Name	Ggra7887.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	235

Homology

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BLAST of Ggra7887.t1 vs. uniprot
Match: R7QMD5 (Chromosome segregation protein SMC, ParB family n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMD5_CHOCR)

HSP 1 Score: 84.0 bits (206), Expect = 4.410e-16
Identity = 49/189 (25.93%), Postives = 102/189 (53.97%), Query Frame = 0

Query:   32 ARLKQKIGSYNEQYDDVTADILALGDDKHDIDFKRAEDIEELEQQNQNWISAAKKVQEAVNDTSSLQEQQKSVEELEHLKKELLDAFVKSSDENAELQEKVRDLEGPMQHLEQFNSHVYDKEHSEVPTKKFTLKVLKLLSAAYLHEDGDPKVFKGFFTHPKTNDVIPFKYNEDVPDFERIEEVWDTLSE 220
            A+L +   ++++ Y  +T  +  + D+      +R E I EL      W++  +K ++   +  SL ++Q+ V+++E  +++L+   +  ++E   L++K  DL+  + HLEQ    +  K+  E+PT  F  K+   +SA  +    D  + +GF +  +  +V+PF+Y+   P FER+ ++W+ +SE
Sbjct:   36 AQLDESNSTFDDSYPKITELLGLIADNAVATHSERTERITELRDLLSEWVARTEKAKKQSENVESLFDRQRYVQQMEAEREDLIQEILAGTEETGRLEQKNDDLKEKLAHLEQIAESLKKKKKEEIPTYLFLRKIFCQVSATKI-VTSDSDLLEGFVSKSERKEVLPFRYDRTKPTFERVNDLWNKISE 223

The following BLAST results are available for this feature:

BLAST of Ggra7887.t1 vs. uniprot

BLAST of Ggra7887.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7QMD5	4.410e-16	25.93	Chromosome segregation protein SMC, ParB family n=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 70..90
None	No IPR available	COILS	Coil	Coil	coord: 97..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:244767..245471 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7887.t1	Ggra7887.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000073_pilon 244767..245471 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra7887.t1 ID=Ggra7887.t1|Name=Ggra7887.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MVEQSQNELGGSAFIDKSENQKEGRVWNEEFARLKQKIGSYNEQYDDVTA
DILALGDDKHDIDFKRAEDIEELEQQNQNWISAAKKVQEAVNDTSSLQEQ
QKSVEELEHLKKELLDAFVKSSDENAELQEKVRDLEGPMQHLEQFNSHVY
DKEHSEVPTKKFTLKVLKLLSAAYLHEDGDPKVFKGFFTHPKTNDVIPFK
YNEDVPDFERIEEVWDTLSEIVDGDPQNSHQVKA*