Ggra7870.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7870.t1
Unique NameGgra7870.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length513
Homology
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BLAST of Ggra7870.t1 vs. uniprot
Match: A0A2V3IVV4 (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVV4_9FLOR)

HSP 1 Score: 264 bits (674), Expect = 9.390e-79
Identity = 350/482 (72.61%), Postives = 388/482 (80.50%), Query Frame = 0 
Query:   31 SFATPTFVQR-RNASPALKCPRHSPLRTTPRISRTFLHPSAVTTSYARSSTRANEDPQELINKEASERQWRRQNSFLVHHAHTNGVDAAIQVLWRMTRDGKAVTQNYNQVVSLLAADHRFSDGLALADEAGKRGMANIITFRPLMKYCCANGHGKGAKRVWNTMAHHGIDGDMFLFAELMGALIRSEDLASAQKVLDSLVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMFARVGKFEDALAIYREMQESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVDRGFTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLETLRGLYKSGGMLDSLAKVEMLREVRERGGLLRLQRELKACKTLD 511
            +F +PTF      A P L   + +  R  P   +T   PSA   +Y R+ST   EDP +     ASER+WR QN+FLV  A  +GV+AAI++LWRMT+DG+AVTQNYNQVVSLLA++ R ++GLALADEAGKRG+ANIITFRPLMK+CCA G GK AKRVWNTMA HG+DGDMFL+AELMGAL+RS+DL S          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKM+ARVG+FEDA++IY+EMQ++V                             MV+RGFTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +ETLRGLYKSGG+L + AK  +LREVRERGGLLRLQRELKA KT D
Sbjct:    7 AFLSPTFAPHWAGARPRLVAKQCNLRRKRPHF-QTSSRPSATAANYGRTSTHVREDPPDSNRLAASERRWRSQNAFLVSEAEKHGVNAAIEILWRMTKDGEAVTQNYNQVVSLLASEDRLNEGLALADEAGKRGIANIITFRPLMKHCCAKGDGKAAKRVWNTMARHGVDGDMFLYAELMGALVRSQDLMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMYARVGRFEDAMSIYKEMQQTVQPSIVTYNTLIDGCAHRGDMDRAGKFFDEMVERGFTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVETLRGLYKSGGILATSAKAALLREVRERGGLLRLQRELKAAKTSD 487
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BLAST of Ggra7870.t1 vs. uniprot
Match: A0A1X6NJS9 (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJS9_PORUM)

HSP 1 Score: 94.7 bits (234), Expect = 2.040e-17
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 0 
Query:  125 MTRDGKAVTQNYNQVVSLLAADHRFSDGLALADEAGKRGMANIITFRPLMKYCCANGHGKGAKRVWNTMAHHGIDGDMFLFAELMGALIRSEDLASAQKVLDSLV 229
            M   G A  QNYNQ VSLLAAD     GLALA      G+AN+IT+RPLMKYC + G    A +    M   G+  DMF++AELM +L+R+  +A A+ VL  +V
Sbjct:    1 MVAAGTAFQQNYNQAVSLLAADGDIEGGLALAATVADVGLANVITYRPLMKYCGSKGDAPHAMQTMAAMRGAGVVPDMFVYAELMSSLVRAGQVADAEGVLREIV 105
The following BLAST results are available for this feature:
BLAST of Ggra7870.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IVV49.390e-7972.61Pentatricopeptide repeat-containing protein n=1 Ta... [more]
A0A1X6NJS92.040e-1747.62Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 231..297
e-value: 2.2E-12
score: 48.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 96..230
e-value: 3.6E-15
score: 58.2
coord: 298..500
e-value: 2.6E-41
score: 144.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 238..272
e-value: 1.4E-6
score: 26.1
coord: 342..376
e-value: 1.2E-10
score: 38.8
coord: 309..336
e-value: 5.5E-7
score: 27.4
coord: 378..407
e-value: 2.1E-5
score: 22.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 235..283
e-value: 2.3E-11
score: 43.7
coord: 339..386
e-value: 5.0E-15
score: 55.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 416..442
e-value: 1.4
score: 9.3
coord: 309..335
e-value: 1.2E-5
score: 25.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 306..336
score: 10.270796
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 271..305
score: 8.560833
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 340..374
score: 13.328999
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..409
score: 10.950397
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 236..270
score: 10.775016
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..95
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 68..360
NoneNo IPR availablePANTHERPTHR47933:SF32OS06G0111300 PROTEINcoord: 253..468
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 253..468
NoneNo IPR availablePANTHERPTHR47933:SF32OS06G0111300 PROTEINcoord: 68..360
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..512
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..24
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 246..441

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:200964..202601 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7870.t1Ggra7870.t1Gracilaria gracilis GNS1m malemRNAtig00000073_pilon 200964..202601 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7870.t1 ID=Ggra7870.t1|Name=Ggra7870.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=513bp
MSSYRANSTLPLCSILYMHHATDAVPMSCLSFATPTFVQRRNASPALKCP
RHSPLRTTPRISRTFLHPSAVTTSYARSSTRANEDPQELINKEASERQWR
RQNSFLVHHAHTNGVDAAIQVLWRMTRDGKAVTQNYNQVVSLLAADHRFS
DGLALADEAGKRGMANIITFRPLMKYCCANGHGKGAKRVWNTMAHHGIDG
DMFLFAELMGALIRSEDLASAQKVLDSLVETGRRPHIVLYNTLMKGFARK
ADIRGGFELFREIENCGVKPDETTFNTLLNVCVRGKDLKAVNKAMALMDK
YQVKPGAPTFNTLLKMFARVGKFEDALAIYREMQESVEPSIVTFNTLIDG
CAHRGDMDQAAAFFDEMVDRGFTPDICTMTSLLKGFGRCRDPEKAVELFE
AMKEGGYQIQERTRYAVINACLRGNDRQNARKYIDEMVESGLTVRVRTWI
WLLECDLYADDERHALETLRGLYKSGGMLDSLAKVEMLREVRERGGLLRL
QRELKACKTLDV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat