Ggra7870.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7870.t1
Unique NameGgra7870.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:200964..202601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7870Ggra7870Gracilaria gracilis GNS1m malegenetig00000073_pilon 200964..202601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7870.t1Ggra7870.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 200964..202601 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7870.t1.stop1Ggra7870.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 200964..200966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7870.t1.CDS1Ggra7870.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 200964..201683 -
Ggra7870.t1.CDS2Ggra7870.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 201783..202601 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7870.t1.exon1Ggra7870.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 200964..201683 -
Ggra7870.t1.exon2Ggra7870.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 201783..202601 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7870.t1.intron1Ggra7870.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 201684..201782 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7870.t1.start1Ggra7870.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 202599..202601 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7870.t1 ID=Ggra7870.t1|Name=Ggra7870.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp
MSSYRANSTLPLCSILYMHHATDAVPMSCLSFATPTFVQRRNASPALKCP
RHSPLRTTPRISRTFLHPSAVTTSYARSSTRANEDPQELINKEASERQWR
RQNSFLVHHAHTNGVDAAIQVLWRMTRDGKAVTQNYNQVVSLLAADHRFS
DGLALADEAGKRGMANIITFRPLMKYCCANGHGKGAKRVWNTMAHHGIDG
DMFLFAELMGALIRSEDLASAQKVLDSLVETGRRPHIVLYNTLMKGFARK
ADIRGGFELFREIENCGVKPDETTFNTLLNVCVRGKDLKAVNKAMALMDK
YQVKPGAPTFNTLLKMFARVGKFEDALAIYREMQESVEPSIVTFNTLIDG
CAHRGDMDQAAAFFDEMVDRGFTPDICTMTSLLKGFGRCRDPEKAVELFE
AMKEGGYQIQERTRYAVINACLRGNDRQNARKYIDEMVESGLTVRVRTWI
WLLECDLYADDERHALETLRGLYKSGGMLDSLAKVEMLREVRERGGLLRL
QRELKACKTLDV*
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spliced messenger RNA

>Ggra7870.t1 ID=Ggra7870.t1|Name=Ggra7870.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000073_pilon:200964..202601- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTTACCGCGCCAACTCCACGCTACCACTTTGTTCCATATTGTA
CATGCACCACGCCACTGACGCAGTTCCGATGAGCTGCCTTTCTTTCGCGA
CCCCAACGTTTGTTCAGAGGCGCAATGCCTCTCCGGCTCTCAAATGTCCA
CGTCATTCCCCTTTGAGAACAACTCCAAGGATCTCTCGTACATTTCTACA
CCCGTCTGCAGTCACTACCAGTTACGCTCGTTCATCCACAAGAGCGAATG
AAGACCCGCAAGAACTCATCAATAAAGAAGCTTCAGAGAGGCAATGGCGA
CGACAAAACAGCTTTCTCGTTCACCACGCGCACACAAATGGTGTTGATGC
CGCAATTCAGGTGCTGTGGCGAATGACTAGGGATGGAAAGGCCGTCACGC
AGAACTATAACCAGGTAGTGAGCCTGTTGGCTGCTGACCACCGCTTCAGC
GATGGGCTCGCCCTTGCTGATGAAGCTGGGAAACGCGGCATGGCCAACAT
CATTACCTTTAGACCGCTCATGAAGTACTGCTGTGCAAATGGCCACGGCA
AAGGCGCCAAACGAGTATGGAATACCATGGCACATCACGGCATTGATGGC
GATATGTTTCTTTTTGCGGAGCTCATGGGTGCGCTCATACGGTCTGAAGA
TTTGGCTTCAGCTCAAAAAGTCTTGGATTCGTTGGTGGAAACTGGGCGCC
GTCCTCATATCGTACTGTACAACACACTCATGAAAGGATTCGCTAGGAAA
GCTGACATTCGAGGCGGGTTCGAACTTTTTCGCGAAATTGAGAACTGCGG
CGTTAAGCCCGATGAAACAACCTTCAACACCTTACTAAATGTTTGCGTTC
GAGGCAAGGACTTAAAGGCTGTAAACAAGGCTATGGCACTCATGGACAAG
TATCAGGTGAAACCCGGAGCTCCTACTTTCAACACGCTTCTCAAAATGTT
CGCGAGAGTCGGTAAATTCGAGGATGCTTTAGCGATTTACAGGGAGATGC
AGGAATCCGTAGAACCGTCAATCGTTACGTTTAACACCTTGATAGATGGG
TGCGCTCATCGAGGCGATATGGATCAAGCAGCTGCGTTTTTCGACGAAAT
GGTTGACCGTGGTTTTACACCCGATATCTGTACCATGACGTCTCTATTGA
AGGGCTTTGGGCGATGTAGGGACCCAGAAAAGGCAGTTGAATTGTTTGAA
GCGATGAAAGAAGGTGGATATCAAATTCAGGAACGGACTCGGTATGCAGT
GATCAACGCCTGTCTGAGAGGGAATGATAGGCAGAATGCACGAAAATACA
TCGATGAGATGGTGGAGAGTGGACTAACAGTTCGTGTACGGACATGGATC
TGGCTGTTGGAGTGTGACTTGTATGCAGATGATGAGCGACATGCCCTTGA
GACTCTGCGAGGGCTATACAAGTCTGGCGGCATGCTAGACTCATTGGCAA
AAGTAGAAATGCTACGAGAAGTTCGAGAACGGGGTGGTCTGCTCCGACTT
CAGCGCGAATTGAAAGCTTGCAAGACTCTTGATGTGTGA
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protein sequence of Ggra7870.t1

>Ggra7870.t1 ID=Ggra7870.t1|Name=Ggra7870.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=513bp
MSSYRANSTLPLCSILYMHHATDAVPMSCLSFATPTFVQRRNASPALKCP
RHSPLRTTPRISRTFLHPSAVTTSYARSSTRANEDPQELINKEASERQWR
RQNSFLVHHAHTNGVDAAIQVLWRMTRDGKAVTQNYNQVVSLLAADHRFS
DGLALADEAGKRGMANIITFRPLMKYCCANGHGKGAKRVWNTMAHHGIDG
DMFLFAELMGALIRSEDLASAQKVLDSLVETGRRPHIVLYNTLMKGFARK
ADIRGGFELFREIENCGVKPDETTFNTLLNVCVRGKDLKAVNKAMALMDK
YQVKPGAPTFNTLLKMFARVGKFEDALAIYREMQESVEPSIVTFNTLIDG
CAHRGDMDQAAAFFDEMVDRGFTPDICTMTSLLKGFGRCRDPEKAVELFE
AMKEGGYQIQERTRYAVINACLRGNDRQNARKYIDEMVESGLTVRVRTWI
WLLECDLYADDERHALETLRGLYKSGGMLDSLAKVEMLREVRERGGLLRL
QRELKACKTLDV*
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mRNA from alignment at tig00000073_pilon:200964..202601-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7870.t1 ID=Ggra7870.t1|Name=Ggra7870.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000073_pilon:200964..202601- (Gracilaria gracilis GNS1m male)
ATGTCTTCTTACCGCGCCAACTCCACGCTACCACTTTGTTCCATATTGTA
CATGCACCACGCCACTGACGCAGTTCCGATGAGCTGCCTTTCTTTCGCGA
CCCCAACGTTTGTTCAGAGGCGCAATGCCTCTCCGGCTCTCAAATGTCCA
CGTCATTCCCCTTTGAGAACAACTCCAAGGATCTCTCGTACATTTCTACA
CCCGTCTGCAGTCACTACCAGTTACGCTCGTTCATCCACAAGAGCGAATG
AAGACCCGCAAGAACTCATCAATAAAGAAGCTTCAGAGAGGCAATGGCGA
CGACAAAACAGCTTTCTCGTTCACCACGCGCACACAAATGGTGTTGATGC
CGCAATTCAGGTGCTGTGGCGAATGACTAGGGATGGAAAGGCCGTCACGC
AGAACTATAACCAGGTAGTGAGCCTGTTGGCTGCTGACCACCGCTTCAGC
GATGGGCTCGCCCTTGCTGATGAAGCTGGGAAACGCGGCATGGCCAACAT
CATTACCTTTAGACCGCTCATGAAGTACTGCTGTGCAAATGGCCACGGCA
AAGGCGCCAAACGAGTATGGAATACCATGGCACATCACGGCATTGATGGC
GATATGTTTCTTTTTGCGGAGCTCATGGGTGCGCTCATACGGTCTGAAGA
TTTGGCTTCAGCTCAAAAAGTCTTGGATTCGTTGGTGGAAACTGGGCGCC
GTCCTCATATCGTACTGTACAACACACTCATGAAAGGATTCGCTAGGAAA
GCTGACATTCGAGGCGGGTTCGAACTTTTTCGCGAAATTGAGAACTGCGG
CGTTAAGCCCGATGAAACAGTAAGTGAAAGCATTCATACGCGTAGTGAAG
GCGTGAACCATCGATTCAATCAAAGGTTTACTCTTTTAACTAACTGTTTG
TGTTGATTTACTGAGCAGACCTTCAACACCTTACTAAATGTTTGCGTTCG
AGGCAAGGACTTAAAGGCTGTAAACAAGGCTATGGCACTCATGGACAAGT
ATCAGGTGAAACCCGGAGCTCCTACTTTCAACACGCTTCTCAAAATGTTC
GCGAGAGTCGGTAAATTCGAGGATGCTTTAGCGATTTACAGGGAGATGCA
GGAATCCGTAGAACCGTCAATCGTTACGTTTAACACCTTGATAGATGGGT
GCGCTCATCGAGGCGATATGGATCAAGCAGCTGCGTTTTTCGACGAAATG
GTTGACCGTGGTTTTACACCCGATATCTGTACCATGACGTCTCTATTGAA
GGGCTTTGGGCGATGTAGGGACCCAGAAAAGGCAGTTGAATTGTTTGAAG
CGATGAAAGAAGGTGGATATCAAATTCAGGAACGGACTCGGTATGCAGTG
ATCAACGCCTGTCTGAGAGGGAATGATAGGCAGAATGCACGAAAATACAT
CGATGAGATGGTGGAGAGTGGACTAACAGTTCGTGTACGGACATGGATCT
GGCTGTTGGAGTGTGACTTGTATGCAGATGATGAGCGACATGCCCTTGAG
ACTCTGCGAGGGCTATACAAGTCTGGCGGCATGCTAGACTCATTGGCAAA
AGTAGAAATGCTACGAGAAGTTCGAGAACGGGGTGGTCTGCTCCGACTTC
AGCGCGAATTGAAAGCTTGCAAGACTCTTGATGTGTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:200964..202601-

>Ggra7870.t1 ID=Ggra7870.t1|Name=Ggra7870.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1539bp|location=Sequence derived from alignment at tig00000073_pilon:200964..202601- (Gracilaria gracilis GNS1m male)
ATGTCTTCTTACCGCGCCAACTCCACGCTACCACTTTGTTCCATATTGTA
CATGCACCACGCCACTGACGCAGTTCCGATGAGCTGCCTTTCTTTCGCGA
CCCCAACGTTTGTTCAGAGGCGCAATGCCTCTCCGGCTCTCAAATGTCCA
CGTCATTCCCCTTTGAGAACAACTCCAAGGATCTCTCGTACATTTCTACA
CCCGTCTGCAGTCACTACCAGTTACGCTCGTTCATCCACAAGAGCGAATG
AAGACCCGCAAGAACTCATCAATAAAGAAGCTTCAGAGAGGCAATGGCGA
CGACAAAACAGCTTTCTCGTTCACCACGCGCACACAAATGGTGTTGATGC
CGCAATTCAGGTGCTGTGGCGAATGACTAGGGATGGAAAGGCCGTCACGC
AGAACTATAACCAGGTAGTGAGCCTGTTGGCTGCTGACCACCGCTTCAGC
GATGGGCTCGCCCTTGCTGATGAAGCTGGGAAACGCGGCATGGCCAACAT
CATTACCTTTAGACCGCTCATGAAGTACTGCTGTGCAAATGGCCACGGCA
AAGGCGCCAAACGAGTATGGAATACCATGGCACATCACGGCATTGATGGC
GATATGTTTCTTTTTGCGGAGCTCATGGGTGCGCTCATACGGTCTGAAGA
TTTGGCTTCAGCTCAAAAAGTCTTGGATTCGTTGGTGGAAACTGGGCGCC
GTCCTCATATCGTACTGTACAACACACTCATGAAAGGATTCGCTAGGAAA
GCTGACATTCGAGGCGGGTTCGAACTTTTTCGCGAAATTGAGAACTGCGG
CGTTAAGCCCGATGAAACAACCTTCAACACCTTACTAAATGTTTGCGTTC
GAGGCAAGGACTTAAAGGCTGTAAACAAGGCTATGGCACTCATGGACAAG
TATCAGGTGAAACCCGGAGCTCCTACTTTCAACACGCTTCTCAAAATGTT
CGCGAGAGTCGGTAAATTCGAGGATGCTTTAGCGATTTACAGGGAGATGC
AGGAATCCGTAGAACCGTCAATCGTTACGTTTAACACCTTGATAGATGGG
TGCGCTCATCGAGGCGATATGGATCAAGCAGCTGCGTTTTTCGACGAAAT
GGTTGACCGTGGTTTTACACCCGATATCTGTACCATGACGTCTCTATTGA
AGGGCTTTGGGCGATGTAGGGACCCAGAAAAGGCAGTTGAATTGTTTGAA
GCGATGAAAGAAGGTGGATATCAAATTCAGGAACGGACTCGGTATGCAGT
GATCAACGCCTGTCTGAGAGGGAATGATAGGCAGAATGCACGAAAATACA
TCGATGAGATGGTGGAGAGTGGACTAACAGTTCGTGTACGGACATGGATC
TGGCTGTTGGAGTGTGACTTGTATGCAGATGATGAGCGACATGCCCTTGA
GACTCTGCGAGGGCTATACAAGTCTGGCGGCATGCTAGACTCATTGGCAA
AAGTAGAAATGCTACGAGAAGTTCGAGAACGGGGTGGTCTGCTCCGACTT
CAGCGCGAATTGAAAGCTTGCAAGACTCTTGATGTGTGA
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