Ggra7688.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7688.t1
Unique NameGgra7688.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length70
Homology
[Close]
BLAST of Ggra7688.t1 vs. uniprot
Match: A0A2V3IX01 (Cyclin-dependent kinases regulatory subunit n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX01_9FLOR)

HSP 1 Score: 90.1 bits (222), Expect = 2.750e-22
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0 
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEW 43
            MP+HQIQYSDKYYDDVYEYRHVILPADIAKHVPK+RLL ENEW
Sbjct:    1 MPSHQIQYSDKYYDDVYEYRHVILPADIAKHVPKDRLLLENEW 43
[Close]
BLAST of Ggra7688.t1 vs. uniprot
Match: R7QAJ8 (Cyclin-dependent kinases regulatory subunit (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAJ8_CHOCR)

HSP 1 Score: 82.8 bits (203), Expect = 3.410e-19
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 0 
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEW 43
            MP  QIQYS+KYYDDVYE+RHVILP DIAKH+PKNRLL+ENEW
Sbjct:   18 MPVPQIQYSEKYYDDVYEFRHVILPVDIAKHLPKNRLLSENEW 60
[Close]
BLAST of Ggra7688.t1 vs. uniprot
Match: A0A182JID4 (Cyclin-dependent kinases regulatory subunit n=1 Tax=Anopheles atroparvus TaxID=41427 RepID=A0A182JID4_9DIPT)

HSP 1 Score: 77.0 bits (188), Expect = 3.750e-17
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0 
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWHD 45
            MPT QIQYS+KYYDDVYEYRHVILP D+AK+VPK  L+ E EW +
Sbjct:    1 MPTDQIQYSEKYYDDVYEYRHVILPPDLAKYVPKTHLMTETEWRN 45
[Close]
BLAST of Ggra7688.t1 vs. uniprot
Match: A0A2V0NV22 (Cyclin-dependent kinases regulatory subunit n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NV22_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 4.480e-17
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 0 
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEW 43
            M  H IQYS+KYYDDVYEYRHV+LP +IA H+PKNRLL ENEW
Sbjct:    1 MAQHSIQYSEKYYDDVYEYRHVVLPPEIANHLPKNRLLDENEW 43
[Close]
BLAST of Ggra7688.t1 vs. uniprot
Match: A0A182I8T6 (Cyclin-dependent kinases regulatory subunit n=7 Tax=Cellia TaxID=44534 RepID=A0A182I8T6_ANOAR)

HSP 1 Score: 75.5 bits (184), Expect = 1.830e-16
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 0 
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWHD 45
            MP+ QIQYS+KYYDDVYEYRHVILP D+AK+VPK  L+ E EW +
Sbjct:    1 MPSDQIQYSEKYYDDVYEYRHVILPPDLAKYVPKTHLMTETEWRN 45
[Close]
BLAST of Ggra7688.t1 vs. uniprot
Match: cyclin-dependent kinases regulatory subunit 2 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A2B0C (cyclin-dependent kinases regulatory subunit 2 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A2B0C)

HSP 1 Score: 75.5 bits (184), Expect = 2.090e-16
Identity = 30/39 (76.92%), Postives = 38/39 (97.44%), Query Frame = 0 
Query:    5 QIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEW 43
            QIQYSDKY+DD+YEYRHV+LP ++AKH+PKNR+LAE+EW
Sbjct:    3 QIQYSDKYFDDIYEYRHVVLPPEVAKHLPKNRILAESEW 41
[Close]
BLAST of Ggra7688.t1 vs. uniprot
Match: A0A7R9B9B6 (Cyclin-dependent kinases regulatory subunit n=1 Tax=Timema shepardi TaxID=629360 RepID=A0A7R9B9B6_TIMSH)

HSP 1 Score: 75.1 bits (183), Expect = 2.110e-16
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 0 
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWHD 45
            MP  QIQYS+KYYDD++EYRHVILP D+AKHVPK+ L+ E EW +
Sbjct:    9 MPADQIQYSEKYYDDLFEYRHVILPQDLAKHVPKSHLMTETEWRN 53
[Close]
BLAST of Ggra7688.t1 vs. uniprot
Match: A0A383V2I5 (Cyclin-dependent kinases regulatory subunit n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383V2I5_TETOB)

HSP 1 Score: 75.5 bits (184), Expect = 2.510e-16
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = 0 
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEW 43
            M  + IQYS+KYYDD+YEYRHV+LP +IA+H+PKNRLL+ENEW
Sbjct:    1 MAHNNIQYSEKYYDDIYEYRHVVLPPEIAQHLPKNRLLSENEW 43
[Close]
BLAST of Ggra7688.t1 vs. uniprot
Match: A0A7R9K1S2 (Cyclin-dependent kinases regulatory subunit n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9K1S2_TIMGE)

HSP 1 Score: 75.1 bits (183), Expect = 3.570e-16
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 0 
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWHD 45
            MP  QIQYS+KYYDD++EYRHVILP D+AKHVPK+ L+ E EW +
Sbjct:    1 MPADQIQYSEKYYDDLFEYRHVILPQDLAKHVPKSHLMTETEWRN 45
[Close]
BLAST of Ggra7688.t1 vs. uniprot
Match: A0A7R9NWR6 (Cyclin-dependent kinases regulatory subunit n=1 Tax=Timema tahoe TaxID=61484 RepID=A0A7R9NWR6_9NEOP)

HSP 1 Score: 75.1 bits (183), Expect = 5.550e-16
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 0 
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWHD 45
            MP  QIQYS+KYYDD++EYRHVILP D+AKHVPK+ L+ E EW +
Sbjct:    1 MPADQIQYSEKYYDDLFEYRHVILPQDLAKHVPKSHLMTETEWRN 45
The following BLAST results are available for this feature:
BLAST of Ggra7688.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IX012.750e-2293.02Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
R7QAJ83.410e-1983.72Cyclin-dependent kinases regulatory subunit (Fragm... [more]
A0A182JID43.750e-1773.33Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A2V0NV224.480e-1776.74Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A182I8T61.830e-1671.11Cyclin-dependent kinases regulatory subunit n=7 Ta... [more]
cyclin-dependent kinases regulatory subunit 2 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A2B0C2.090e-1676.92cyclin-dependent kinases regulatory subunit 2 n=1 ... [more]
A0A7R9B9B62.110e-1668.89Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A383V2I52.510e-1672.09Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7R9K1S23.570e-1668.89Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7R9NWR65.550e-1668.89Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000789Cyclin-dependent kinase, regulatory subunitPRINTSPR00296CYCLINKINASEcoord: 20..34
score: 62.05
coord: 5..19
score: 66.15
IPR000789Cyclin-dependent kinase, regulatory subunitSMARTSM01084CKS_2coord: 5..50
e-value: 1.5E-11
score: 54.4
IPR000789Cyclin-dependent kinase, regulatory subunitPFAMPF01111CKScoord: 6..45
e-value: 5.9E-17
score: 61.7
IPR036858Cyclin-dependent kinase, regulatory subunit superfamilyGENE3D3.30.170.10coord: 1..53
e-value: 3.9E-18
score: 67.2
IPR036858Cyclin-dependent kinase, regulatory subunit superfamilySUPERFAMILY55637Cell cycle regulatory proteinscoord: 2..45
NoneNo IPR availablePANTHERPTHR23415:SF29CYCLIN-DEPENDENT KINASES REGULATORY SUBUNITcoord: 1..44
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:68260..68879 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7688.t1Ggra7688.t1Gracilaria gracilis GNS1m malemRNAtig00000088_pilon 68260..68879 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7688.t1 ID=Ggra7688.t1|Name=Ggra7688.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=70bp
MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWHDRRMES
IEAIELFVPSTFVPNSPCS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000789Cyclin-dep_kinase_reg-sub
IPR036858Cyclin-dep_kinase_reg-sub_sf