Ggra7688.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7688.t1
Unique NameGgra7688.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length70
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:68260..68879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707279.1
Preferred nameCKS2
PFAMsCKS
Max annot lvl2759|Eukaryota
KEGG rclassRC03394
KEGG koko:K02219,ko:K13071
KEGG ReactionR08921
KEGG Pathwayko00860,ko01110,ko04111,ko05200,ko05222,map00860,map01110,map04111,map05200,map05222
GOsGO:0000003,GO:0000079,GO:0000151,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000307,GO:0001932,GO:0001934,GO:0002009,GO:0002165,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007056,GO:0007057,GO:0007113,GO:0007127,GO:0007143,GO:0007144,GO:0007275,GO:0007276,GO:0007292,GO:0007346,GO:0007444,GO:0007488,GO:0007552,GO:0007560,GO:0008047,GO:0008150,GO:0008152,GO:0008270,GO:0008283,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009791,GO:0009794,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010389,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0016043,GO:0016310,GO:0016538,GO:0019005,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030163,GO:0030234,GO:0030295,GO:0031145,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031461,GO:0031974,GO:0031981,GO:0032147,GO:0032182,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033301,GO:0033674,GO:0034641,GO:0034645,GO:0034728,GO:0035186,GO:0035239,GO:0035295,GO:0036211,GO:0042023,GO:0042325,GO:0042327,GO:0042393,GO:0043085,GO:0043130,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043539,GO:0043549,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044877,GO:0045448,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0045995,GO:0046483,GO:0046872,GO:0046914,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048563,GO:0048569,GO:0048609,GO:0048707,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051225,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051321,GO:0051338,GO:0051347,GO:0051603,GO:0051704,GO:0051726,GO:0060255,GO:0060303,GO:0060429,GO:0060562,GO:0061575,GO:0061695,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0090304,GO:0090306,GO:0098772,GO:0140013,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901990,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902911,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000026,GO:2000112,GO:2001141
Evalue2.76e-17
EggNOG OGsKOG3484@1|root,KOG3484@2759|Eukaryota
EC1.14.15.17
Descriptioncyclin-dependent protein serine/threonine kinase activator activity
COG categoryD
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7688Ggra7688Gracilaria gracilis GNS1m malegenetig00000088_pilon 68260..68879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7688.t1Ggra7688.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 68260..68879 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7688.t1.stop1Ggra7688.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 68260..68262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7688.t1.CDS1Ggra7688.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 68260..68273 -
Ggra7688.t1.CDS2Ggra7688.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000088_pilon 68502..68567 -
Ggra7688.t1.CDS3Ggra7688.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000088_pilon 68647..68717 -
Ggra7688.t1.CDS4Ggra7688.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000088_pilon 68821..68879 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7688.t1.exon1Ggra7688.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 68260..68273 -
Ggra7688.t1.exon2Ggra7688.t1.exon2Gracilaria gracilis GNS1m maleexontig00000088_pilon 68502..68567 -
Ggra7688.t1.exon3Ggra7688.t1.exon3Gracilaria gracilis GNS1m maleexontig00000088_pilon 68647..68717 -
Ggra7688.t1.exon4Ggra7688.t1.exon4Gracilaria gracilis GNS1m maleexontig00000088_pilon 68821..68879 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7688.t1.intron1Ggra7688.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000088_pilon 68274..68501 -
Ggra7688.t1.intron2Ggra7688.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000088_pilon 68568..68646 -
Ggra7688.t1.intron3Ggra7688.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000088_pilon 68718..68820 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7688.t1.start1Ggra7688.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 68877..68879 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7688.t1 ID=Ggra7688.t1|Name=Ggra7688.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=70bp
MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWHDRRMES
IEAIELFVPSTFVPNSPCS*
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spliced messenger RNA

>Ggra7688.t1 ID=Ggra7688.t1|Name=Ggra7688.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp|location=Sequence derived from alignment at tig00000088_pilon:68260..68879- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACCCACCAGATTCAGTACTCCGACAAGTACTACGACGATGTGTA
TGAGTACAGGCATGTCATCCTCCCTGCGGATATCGCCAAGCATGTGCCCA
AGAACCGTTTATTAGCCGAGAACGAGTGGCACGACCGAAGGATGGAAAGT
ATTGAAGCTATTGAGTTGTTTGTACCATCTACATTCGTGCCCAACTCTCC
GTGCTCTTGA
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protein sequence of Ggra7688.t1

>Ggra7688.t1 ID=Ggra7688.t1|Name=Ggra7688.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=70bp
MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWHDRRMES
IEAIELFVPSTFVPNSPCS*
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mRNA from alignment at tig00000088_pilon:68260..68879-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7688.t1 ID=Ggra7688.t1|Name=Ggra7688.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=620bp|location=Sequence derived from alignment at tig00000088_pilon:68260..68879- (Gracilaria gracilis GNS1m male)
ATGCCCACCCACCAGATTCAGTACTCCGACAAGTACTACGACGATGTGTA
TGAGTACAGGTAAGCGCCCATACCAGCCGTTTCCGCACCGCTCTGCGTGA
GCTTACCGCTATGTGAGCCCACAGTCTTTTGTCGTGCTGACTGTTCCTCC
GTGTGCTCTTAGGCATGTCATCCTCCCTGCGGATATCGCCAAGCATGTGC
CCAAGAACCGTTTATTAGCCGAGAACGAGTGGCGTTCGATTGGAGTCCAG
CAAAGTCGAGGCTGGGTTCACTACGCTATTCATCGTCCGGAGCCGCACAT
CCTGCTGTTCAGACGACCGAAGGATGGAAAGTATTGAAGCTATTGAGTTG
TTTGTACCATCTACATTCGTGCCCAACTGTACGTTTCTTCTTTGCTCAAG
CACTCCGCCACTGCTTTTTAGCCATCGTGCTCGTGTTTTGTTCCGCCGGC
CGTCGTTGTGCGCGCTGCCGTGCGCAGTCTTAGCCCCATGTAGAACTGCT
TCATTAGTAAAATGTTCCTTTTGTCTCTCCTAACTATCCATTTTCTGAGT
GCGTTTCTTGGACAACATGCTTTATGCCCTGCGCTGTACTTCATCTTCCA
CTTCAGCTCCGTGCTCTTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:68260..68879-

>Ggra7688.t1 ID=Ggra7688.t1|Name=Ggra7688.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=210bp|location=Sequence derived from alignment at tig00000088_pilon:68260..68879- (Gracilaria gracilis GNS1m male)
ATGCCCACCCACCAGATTCAGTACTCCGACAAGTACTACGACGATGTGTA
TGAGTACAGGCATGTCATCCTCCCTGCGGATATCGCCAAGCATGTGCCCA
AGAACCGTTTATTAGCCGAGAACGAGTGGCACGACCGAAGGATGGAAAGT
ATTGAAGCTATTGAGTTGTTTGTACCATCTACATTCGTGCCCAACTCTCC
GTGCTCTTGA
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