Ggra7576.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7576.t1
Unique NameGgra7576.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length408
Homology
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BLAST of Ggra7576.t1 vs. uniprot
Match: A0A2V3IVH4 (Protein AMN1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVH4_9FLOR)

HSP 1 Score: 396 bits (1017), Expect = 5.010e-133
Identity = 220/371 (59.30%), Postives = 264/371 (71.16%), Query Frame = 0 
Query:   32 RALRLLDLPDDVLSRIIVALLAPLDVGSHAPVLEAGFTAALPLALTCQRLHALFHAQLTDVELWQSARLDDRGLVSLSRHVGAALRRIALRRCTRLTARSLHALALHCPSLRALDLSGAPVGDAELSKLLCGAAAAQLRALLLRRCVALSDASLALIXXXXXXXXXXXXXXXXXXXXXXXXXXXAALQRSLTMVVLSECAQLTDAALVALARWCSRLQSVTCRSLPRITNEGVDALCRGARANLAMLDVLHCEQIKARAFLDSVRRYCPLLARRLRGTDGKSLRQMVISALSGLIFHVTGSDVHNGKTAVYFLLVDPGTSNSFRVGIGSACLDLTNYGCILASCFGDTPDEHVKHTLLTQYGLDLDAEAER 402
            R +RLL LPDDVL+R+ +ALL+PL VG H+ ++E GF  ALPLA+TC+RLH LF+AQL DVELWQ+ +LDDRGL +++ H GAALRRIALRRC R+++RSL +LA+HCPSLRALDLS   +GDA+L+  L G+AA++LRALLLR C ALSD+SLALI                                           QL      A  R+   L  VT          G   L +G R+NL  +DVLHC QIKAR FLDSVRRYCP +A+RLRG DGKSLR  V+SALSGLIFHVTG+D++NG+TAVYFLLVDPGTSNSF VGIGS+CLDLTNYGCILASCFGD P+EHVK TLLT+YGLDL+AEA+R
Sbjct:   31 RTMRLLHLPDDVLARVFLALLSPLQVGVHSRIVERGFRNALPLAMTCRRLHDLFYAQLHDVELWQTEQLDDRGLSAIATHAGAALRRIALRRCVRVSSRSLLSLAVHCPSLRALDLSQTAIGDAQLATALAGSAASRLRALLLRGCAALSDSSLALIAARCAQLLVVHGGVVGVRATDGCGAG-----------------QLGTVVHAAAERY---LSLVTAHH-----QRGGGRLVQGVRSNLGGVDVLHCGQIKARPFLDSVRRYCPAVAKRLRGADGKSLRHTVVSALSGLIFHVTGNDIYNGRTAVYFLLVDPGTSNSFLVGIGSSCLDLTNYGCILASCFGDAPNEHVKRTLLTEYGLDLEAEAQR 376
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BLAST of Ggra7576.t1 vs. uniprot
Match: A0A2V3IVN8 (F-box/LRR-repeat protein 20 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVN8_9FLOR)

HSP 1 Score: 192 bits (488), Expect = 4.170e-53
Identity = 124/376 (32.98%), Postives = 201/376 (53.46%), Query Frame = 0 
Query:   34 LRLLDLPDDVLSRIIVALLAPLDVGSHAPVLEAGFTAALPLALTCQRLHALFHAQLTDVELWQSARLDDRGLVSLSRHVGAALRRIALRRCTRLTARSLHALALHCPSLRALDLSGAPVGDAELSKLL--CGAAAAQLRALLLRRCVALSDASLALIXXXXXXXXXXXXXXXXXXXXXXXXXXXAALQRSLTMVVLSECAQLTDAALVALARWCSRLQSVTCRSLPRITNEGVDALCRGARANLAMLDVLHCEQIKARAFLDSVRRYCPLLARRLRGTD------GKSLRQMVISALSGLIFHVTGSDVHNGKTAVYFLLVDPGTSNSFRVGIGSACLDLTNYGCILASCFGDTPDEHVKHTLLTQYGLDLDAEAE 401
            +RLLDLP+D L+ ++  ++ P   G+ + V E    A+LPLA TC+  +A++   +TD+ELW S RLDDRGL S+    G  + R+ LRR +RL+  +  A+   C  LR+LDLS   V D  +  L   CG+   +L+ L L  C  LS  +L  I                            A   +L  +VLS+C++L+DAA+  + + CS L S+T RSL  IT+ G+  +C     +L +LD+L C  +    +  ++  +CP + R L+ ++       + LR  +I+ + GLI+ ++ +D      A+YFLL+D  T   FRV + S  L+L+++G +L S FG  P    ++ LL+++G D   ++E
Sbjct:   70 MRLLDLPEDALALVMTHVMTPAREGTRSIVTEDSLRASLPLAQTCRAFYAVWRRCMTDLELWVSGRLDDRGLTSICASSGRYIHRLGLRR-SRLSLHAFRAIPRFCSQLRSLDLSHTSVTDDVIFSLAARCGS---KLQFLALHGCTKLSSRALRAIADMCTHLRFLDVGRVPAVDDDTLAHIVRARGATLRTLVLSDCSKLSDAAMGHIGKHCSALMSLTVRSLTSITDRGLQTMCEHIGHHLQILDLLDCTGLTMGGYFSTMEAHCPHVFRYLQESNYVDHLGERCLRDNIIATMPGLIYRISATDAIRRLPALYFLLLDESTLRPFRVSVQSKSLNLSDFGTVLISNFGKKPTPKTRNVLLSRFGYDSPCDSE 441
The following BLAST results are available for this feature:
BLAST of Ggra7576.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IVH45.010e-13359.30Protein AMN1-like n=1 Tax=Gracilariopsis chorda Ta... [more]
A0A2V3IVN84.170e-5332.98F-box/LRR-repeat protein 20 n=1 Tax=Gracilariopsis... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 166..191
e-value: 11.0
score: 14.1
coord: 192..217
e-value: 1.7
score: 17.7
coord: 245..270
e-value: 17.0
score: 12.7
coord: 86..111
e-value: 97.0
score: 6.8
coord: 113..138
e-value: 5.9
score: 15.9
coord: 139..163
e-value: 260.0
score: 3.5
coord: 219..244
e-value: 30.0
score: 10.8
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 138..155
e-value: 0.42
score: 10.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 33..318
e-value: 5.9E-31
score: 109.6
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 87..302
NoneNo IPR availablePANTHERPTHR13382:SF7F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17coord: 87..302
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 86..288

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:103484..104707 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7576.t1Ggra7576.t1Gracilaria gracilis GNS1m malemRNAtig00000866_pilon 103484..104707 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7576.t1 ID=Ggra7576.t1|Name=Ggra7576.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=408bp
MATLPFLRWLRRPLQPLPLPLSLSPPPPPPPRALRLLDLPDDVLSRIIVA
LLAPLDVGSHAPVLEAGFTAALPLALTCQRLHALFHAQLTDVELWQSARL
DDRGLVSLSRHVGAALRRIALRRCTRLTARSLHALALHCPSLRALDLSGA
PVGDAELSKLLCGAAAAQLRALLLRRCVALSDASLALIAARCTQLRALDV
GALPAISDAGVAHVAAALQRSLTMVVLSECAQLTDAALVALARWCSRLQS
VTCRSLPRITNEGVDALCRGARANLAMLDVLHCEQIKARAFLDSVRRYCP
LLARRLRGTDGKSLRQMVISALSGLIFHVTGSDVHNGKTAVYFLLVDPGT
SNSFRVGIGSACLDLTNYGCILASCFGDTPDEHVKHTLLTQYGLDLDAEA
ERARVRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf