Ggra7487.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7487.t1
Unique NameGgra7487.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Homology
BLAST of Ggra7487.t1 vs. uniprot
Match: A0A2V3IQ46 (Vacuolar-sorting protein SNF8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ46_9FLOR)

HSP 1 Score: 408 bits (1048), Expect = 1.340e-142
Identity = 205/247 (83.00%), Postives = 221/247 (89.47%), Query Frame = 0
Query:    1 MPPGRRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQNKLNWDDQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT 247
            MPPGRRPG  +IRE+VRRREE+AKRGAMISAETAQHMK QL+TF T LEQFAI HK EIQ D AFRAKFH+MCASIGVDPLTSRKG WSDLL VGDYYYEL VRIIEVCVATRPTNGGII+L ELV+ALR RR TYTENVSSDDVERAL KL+VL GGFK+MM+GHRKVVQSVPVELSVDHT AL   EETGYI+ASAL+ KL W+ +RI  TLRFLLEHEIAWLDLQT+EP+YWILGLMSGSSTFT
Sbjct:    1 MPPGRRPGRASIREDVRRREEMAKRGAMISAETAQHMKMQLRTFSTKLEQFAIDHKDEIQRDPAFRAKFHSMCASIGVDPLTSRKGKWSDLLGVGDYYYELAVRIIEVCVATRPTNGGIISLRELVSALRIRRTTYTENVSSDDVERALAKLNVLEGGFKVMMIGHRKVVQSVPVELSVDHTNALAISEETGYISASALREKLKWEKERIMTTLRFLLEHEIAWLDLQTSEPTYWILGLMSGSSTFT 247          
BLAST of Ggra7487.t1 vs. uniprot
Match: A0A7S0ZAI5 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAI5_9RHOD)

HSP 1 Score: 257 bits (656), Expect = 4.860e-83
Identity = 120/237 (50.63%), Postives = 166/237 (70.04%), Query Frame = 0
Query:    8 GVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQNKLNWDDQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSS 244
            GV  ++E   R+    +RGA + AET + MK Q+  F+ NLE FA +HKKEIQ++  FR +FH MCA+ GVDPLTS KGVWS++L VG+YYYEL +R  E+C+ TR  NGG++ ++E    L  +R TYTE+VS DD+ERA+ KL VL GGF I+ +G + V+QS+P+ELS DHT  L   E TG++T S+  N L W + R+R+   + L+HEIAW+D QT E +YW LGL+ G++
Sbjct:    6 GVSGLQEEAMRQRAFEERGAALEAETVEKMKLQMIEFQKNLEIFAKNHKKEIQTNPEFRTQFHKMCATAGVDPLTSTKGVWSEVLGVGNYYYELAIRTAEICINTRVLNGGMLEVSECKKRLEQKRFTYTEHVSEDDIERAVKKLKVLQGGFDIVRLGKKSVIQSIPMELSPDHTTILRLAENTGFLTLSSTVNALKWQENRVRDAFEYFLQHEIAWIDTQTKESTYWFLGLVKGAA 242          
BLAST of Ggra7487.t1 vs. uniprot
Match: R7Q541 (Vacuolar sorting protein SNF8 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q541_CHOCR)

HSP 1 Score: 252 bits (644), Expect = 3.430e-82
Identity = 120/176 (68.18%), Postives = 148/176 (84.09%), Query Frame = 0
Query:   72 MCASIGVDPLTSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQNKLNWDDQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT 247
            MCA+IGVDPLTS+KGVWSDLL VGD+YYEL VRIIE+CVATRP NGGI++L EL+  L+T+R+TYTE +SSDDVERA+ KLDVLG GFKIM VG+ ++V+SVPVEL+ DHT+AL AC   GY  AS LQ   NWD  R R TL+FLL++EIAWLD Q++EP+YWILGL++G+S+ T
Sbjct:    1 MCATIGVDPLTSKKGVWSDLLGVGDFYYELAVRIIEICVATRPINGGIMSLRELLPVLQTKRITYTEKISSDDVERAVAKLDVLGSGFKIMDVGNNRLVRSVPVELNPDHTKALTACGTKGYTNASELQRLTNWDAYRTRTTLQFLLQNEIAWLDAQSSEPTYWILGLVAGASSQT 176          
BLAST of Ggra7487.t1 vs. uniprot
Match: A0A5J4Z4U0 (Vacuolar-sorting protein SNF8 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4U0_PORPP)

HSP 1 Score: 239 bits (610), Expect = 5.560e-76
Identity = 115/239 (48.12%), Postives = 163/239 (68.20%), Query Frame = 0
Query:    8 GVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQNKLNWDDQRIRNTLRFLLEHEIAWLDLQTA--EPSYWILGLMSGSS 244
            GV  +    + +    + GA ++AE    MK Q++ F+ NLE FA+ HKK+IQ++A FRAKFHAMC ++GVDPL S KGVW+  L VGDYYYEL VR  E+C+ TR  NGGI+ + E    L+ +R T+TE++S DDV RA+ KL VL GGF+++ +  + V+QS+PVELS D   A+  CE+ G +  S L +K  W  +R+   ++FLL++E+ WLDLQ A  EP+YWILGL+ G++
Sbjct:    6 GVSGLHAQQQHKAAYEQAGAALNAELTASMKVQMEQFQHNLESFAVKHKKDIQNNAVFRAKFHAMCLTVGVDPLVSSKGVWASTLGVGDYYYELAVRTAEICITTRVLNGGILDVEECRQRLKRKRFTFTEDISHDDVLRAVEKLKVLQGGFRLVQLDKKTVIQSMPVELSRDQVTAMQLCEDNGILLKSKLASKTGWKKERVDAAVKFLLDYEMCWLDLQYAGGEPAYWILGLVKGAA 244          
BLAST of Ggra7487.t1 vs. uniprot
Match: A0A7S0XMQ4 (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XMQ4_9RHOD)

HSP 1 Score: 224 bits (572), Expect = 6.920e-70
Identity = 118/252 (46.83%), Postives = 156/252 (61.90%), Query Frame = 0
Query:    5 RRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEET--------GYITASALQNKLNWDDQRIRNTLRFLLEHEIAWLDLQTAE-PSYWILGLMSGSSTFT 247
            R  G+  I    +R+  L   GA + +E    M QQL  FR +LE FA +HK EIQ+D AFRAKFH MCA++GVDPLTS KG W   L VGD+YYEL VR +EVC+ TR  NGG++ ++E    L+ +R TYTE +SSDD+ERA+ KL VL GGF ++ +G   V++SVP+E S+D TR L              G ++   +   L W + R ++ L  LL  EIAWLD Q    P YW LGL+SG++T T
Sbjct:   16 RNVGIAGIHAAQQRQAALNSAGAALDSELTASMHQQLGEFRKSLESFARNHKHEIQNDPAFRAKFHQMCATVGVDPLTSAKGSWMAALGVGDFYYELAVRTVEVCIQTRVLNGGVLNVDECRKRLQQKRFTYTEKISSDDIERAIRKLRVLQGGFDVIKLGESSVIKSVPLEFSIDQTRVLQLATRATSAGAPVDGALSVPIVAKALEWPEHRAQDALVLLLNAEIAWLDSQARPLPLYWFLGLVSGAATST 267          
BLAST of Ggra7487.t1 vs. uniprot
Match: H2TYV4 (Vacuolar-sorting protein SNF8 n=79 Tax=Actinopteri TaxID=186623 RepID=H2TYV4_TAKRU)

HSP 1 Score: 221 bits (562), Expect = 1.360e-68
Identity = 112/235 (47.66%), Postives = 159/235 (67.66%), Query Frame = 0
Query:    8 GVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQNKLNWDDQRIRNTLRFLLEHEIAWLDLQTA-EPSYWILGLMS 241
            G GAI +      +  +RG +I+ +    M +QL+TF++NLE+FA  HK+EI+ ++ FR +F  MCA+IGVDPL S KG WS++L VGD+YYELGV+IIEVC+A +  NGG+ITL+EL   +   R  Y ++VS DD+ RA+ KL V+G GF ++ VG   +VQSVP EL++DHT  L   E+ GY+T S +++ L W+ +R  + L  LL+  +AWLD Q A EP YW+  L S
Sbjct:    7 GAGAIAKKKLAEAKYKERGTVIAEDQIAQMSKQLETFKSNLEEFASKHKQEIRKNSQFRVQFQEMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLDELHHRVLKGRGKYAQDVSQDDLMRAIKKLKVMGNGFGMIPVGGSYLVQSVPAELNMDHTVVLQLAEKKGYVTVSEIKDGLKWERERACHVLDHLLKEGLAWLDSQAAGEPQYWLPALFS 241          
BLAST of Ggra7487.t1 vs. uniprot
Match: A0A7S2ZR22 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZR22_9RHOD)

HSP 1 Score: 219 bits (558), Expect = 6.030e-68
Identity = 105/236 (44.49%), Postives = 154/236 (65.25%), Query Frame = 0
Query:    5 RRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQNKLNWDDQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLM 240
            R+ G+GA++    R+  L + G  +  E    M+ Q++ F+ +LE +A  HKKEIQ++   R KFH MC+ +GVDPL S K  W+ L  +GD+Y+EL VR +E+C+ATR  NGGII   EL+  L+ +R+ YTE ++ DD+E+A+ KL + GGGF ++ +G + VV+SVPVEL  DHT  LGA E+ G+ T S +  K+ WD+ R    + FLLE+E+ W+D Q     YW LGL+
Sbjct:    3 RKGGIGALKAQQARQSALKETGEKVQEELLLAMRTQMRQFQESLETYAREHKKEIQNNPELRRKFHKMCSDVGVDPLVSSKNQWTSL-GIGDFYFELAVRTVEICLATRSLNGGIIDAEELLMRLQKKRIKYTEEITIDDIEKAVKKLHIFGGGFALLKLGKKYVVRSVPVELDRDHTIILGAVEQEGHGTQSQITQKVGWDEGRFHKAMNFLLENEMVWVDDQAESRIYWFLGLV 237          
BLAST of Ggra7487.t1 vs. uniprot
Match: A0A401P2N1 (Vacuolar-sorting protein SNF8 n=9 Tax=Elasmobranchii TaxID=7778 RepID=A0A401P2N1_SCYTO)

HSP 1 Score: 219 bits (557), Expect = 7.780e-68
Identity = 110/235 (46.81%), Postives = 155/235 (65.96%), Query Frame = 0
Query:    8 GVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQNKLNWDDQRIRNTLRFLLEHEIAWLDLQTAE-PSYWILGLMS 241
            G GAI +      +  +RG +++ +    M +QL+ F+T+LE+FA  HK+EI+  + FR +F  MCA+IGVDPL S KG WS++L VGD+YYELGV+IIEVC+A +  NGG+ITL+EL   +   R  + ++VS DD+ RA+ KL  LG GF I+ VG R +VQSVP EL++DHT  L   E+ GY+T S +++ L WD +R    L  LL+  +AW+D Q  E P YW+  L S
Sbjct:    7 GAGAIAKRKLAEAKYKERGTVMAEDQLAQMSKQLEMFKTHLEEFASKHKQEIRKSSQFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLDELHQRVLKGRGKFAQDVSQDDLIRAIKKLKSLGNGFSIIPVGGRYLVQSVPAELNMDHTVVLQIAEKNGYVTVSEIKSSLKWDTERTNQVLEHLLKEGLAWVDKQAPEEPQYWLPALFS 241          
BLAST of Ggra7487.t1 vs. uniprot
Match: A0A7K6DIY4 (Vacuolar-sorting protein SNF8 (Fragment) n=1 Tax=Origma solitaria TaxID=720586 RepID=A0A7K6DIY4_9PASS)

HSP 1 Score: 218 bits (556), Expect = 9.720e-68
Identity = 111/235 (47.23%), Postives = 153/235 (65.11%), Query Frame = 0
Query:    8 GVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQFAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQNKLNWDDQRIRNTLRFLLEHEIAWLDLQTA-EPSYWILGLMS 241
            G GAI        +  +RG +++ +    M +QL TFRTNLE+FA  HK+EI+ +  FR +F  MCA+IGVDPL S KG WS++L VGD+YYELGV+IIEVC+A +  NGG+ITL EL   +   R  + ++VS DD+ RA+ KL VLG GF ++ VG   +VQSVP EL++DHT  L   E+ G++T S + + L W+ +R +  L  LL+  +AWLD Q   EP YW+  L S
Sbjct:    7 GAGAIARRKLTEAKYKERGTVLAEDQLAQMSKQLDTFRTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELQQQVLKGRGKFAQDVSQDDLLRAIKKLKVLGSGFGVIPVGGTVLVQSVPAELNMDHTVVLQLAEKKGFVTVSEICSSLKWETERAKQVLEHLLKEGMAWLDAQAPREPHYWLPALFS 241          
BLAST of Ggra7487.t1 vs. uniprot
Match: A0A7K5VEQ5 (Vacuolar-sorting protein SNF8 (Fragment) n=1 Tax=Platysteira castanea TaxID=1160851 RepID=A0A7K5VEQ5_9CORV)

HSP 1 Score: 217 bits (552), Expect = 2.600e-67
Identity = 108/219 (49.32%), Postives = 149/219 (68.04%), Query Frame = 0
Query:   24 KRGAMISAETAQHMKQQLQTFRTNLEQFAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYELGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALMKLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQNKLNWDDQRIRNTLRFLLEHEIAWLDLQT-AEPSYWILGLMS 241
            +RG++++ +    M +QL+TFRTNL++FA  HK EI+   AFR +F  MCA+IGVDPL S KG WS++L VGD+YYELGV+I+EVC+A +  NGG+ITL EL   +   R  + ++VS DD+ RA+ KL VLG GF I+  G   +VQSVP EL++DHT  L   E+ G++T S ++  L W+ +R R  L  LL   +AWLD Q  AEP +W+ GL S
Sbjct:    6 ERGSVLAEDQLAQMSKQLETFRTNLQEFASKHKHEIRRSPAFRLQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIVEVCLALKHRNGGLITLEELQQQVLKGRGKFAQDVSQDDLLRAIKKLKVLGSGFGIIPAGGTFLVQSVPAELNMDHTVVLQLAEKKGFVTVSEIRAGLGWETERARQVLEHLLREGLAWLDAQAPAEPQFWLPGLFS 224          
The following BLAST results are available for this feature:
BLAST of Ggra7487.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQ461.340e-14283.00Vacuolar-sorting protein SNF8 n=1 Tax=Gracilariops... [more]
A0A7S0ZAI54.860e-8350.63Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
R7Q5413.430e-8268.18Vacuolar sorting protein SNF8 n=1 Tax=Chondrus cri... [more]
A0A5J4Z4U05.560e-7648.12Vacuolar-sorting protein SNF8 n=1 Tax=Porphyridium... [more]
A0A7S0XMQ46.920e-7046.83Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
H2TYV41.360e-6847.66Vacuolar-sorting protein SNF8 n=79 Tax=Actinopteri... [more]
A0A7S2ZR226.030e-6844.49Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A401P2N17.780e-6846.81Vacuolar-sorting protein SNF8 n=9 Tax=Elasmobranch... [more]
A0A7K6DIY49.720e-6847.23Vacuolar-sorting protein SNF8 (Fragment) n=1 Tax=O... [more]
A0A7K5VEQ52.600e-6749.32Vacuolar-sorting protein SNF8 (Fragment) n=1 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 93..173
e-value: 2.2E-28
score: 100.0
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 174..246
e-value: 2.2E-18
score: 67.9
IPR016689ESCRT-2 complex, Snf8PIRSFPIRSF017215ESCRT2_Vps22coord: 4..245
e-value: 8.5E-81
score: 268.7
IPR016689ESCRT-2 complex, Snf8PANTHERPTHR12806EAP30 SUBUNIT OF ELL COMPLEXcoord: 5..243
NoneNo IPR availableGENE3D6.10.140.180coord: 27..86
e-value: 1.4E-23
score: 84.3
IPR040608Snf8/Vps36 familyPFAMPF04157EAP30coord: 8..226
e-value: 1.8E-64
score: 217.2
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 177..239
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 28..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:170724..171545 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7487.t1Ggra7487.t1Gracilaria gracilis GNS1m malemRNAtig00000102_pilon 170724..171545 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7487.t1 ID=Ggra7487.t1|Name=Ggra7487.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MPPGRRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQ
FAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYE
LGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALM
KLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQ
NKLNWDDQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR016689ESCRT-2_cplx_Snf8
IPR040608Snf8/Vps36
IPR036390WH_DNA-bd_sf