Ggra7487.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7487.t1
Unique NameGgra7487.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:170724..171545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31033.ENSTRUP00000029863
Preferred nameSNF8
PFAMsEAP30
Max annot lvl33208|Metazoa
KEGG koko:K12188
KEGG Pathwayko04144,map04144
KEGG ModuleM00410
GOsGO:0000003,GO:0000578,GO:0000814,GO:0003002,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005768,GO:0005770,GO:0005829,GO:0005886,GO:0006355,GO:0006357,GO:0006403,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0008022,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008298,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009893,GO:0009894,GO:0009896,GO:0009948,GO:0009952,GO:0009966,GO:0009968,GO:0009987,GO:0009994,GO:0010008,GO:0010256,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010796,GO:0010797,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016247,GO:0016482,GO:0017157,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030154,GO:0030163,GO:0031090,GO:0031323,GO:0031326,GO:0031410,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032535,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035282,GO:0036257,GO:0036258,GO:0036452,GO:0042058,GO:0042059,GO:0042176,GO:0042802,GO:0042803,GO:0042886,GO:0042981,GO:0043067,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043328,GO:0043632,GO:0043900,GO:0043903,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045022,GO:0045184,GO:0045324,GO:0045450,GO:0045732,GO:0045921,GO:0046907,GO:0046983,GO:0047485,GO:0048468,GO:0048469,GO:0048471,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0051036,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0055037,GO:0060255,GO:0060627,GO:0060810,GO:0060811,GO:0061635,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0090066,GO:0097708,GO:0098588,GO:0098772,GO:0098796,GO:0098805,GO:0098927,GO:1901184,GO:1901185,GO:1901564,GO:1901565,GO:1901575,GO:1903506,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1903772,GO:1903900,GO:2000112,GO:2001141
Evalue3.36e-69
EggNOG OGsKOG3341@1|root,KOG3341@2759|Eukaryota,38FCZ@33154|Opisthokonta,3B9KQ@33208|Metazoa,3CUGF@33213|Bilateria,48ATU@7711|Chordata,49758@7742|Vertebrata,49VUQ@7898|Actinopterygii
DescriptionComponent of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs
COG categoryU
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7487Ggra7487Gracilaria gracilis GNS1m malegenetig00000102_pilon 170724..171545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7487.t1Ggra7487.t1Gracilaria gracilis GNS1m malepolypeptidetig00000102_pilon 170724..171545 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7487.t1.start1Ggra7487.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000102_pilon 170724..170726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7487.t1.CDS1Ggra7487.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000102_pilon 170724..171148 +
Ggra7487.t1.CDS2Ggra7487.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000102_pilon 171227..171545 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7487.t1.exon1Ggra7487.t1.exon1Gracilaria gracilis GNS1m maleexontig00000102_pilon 170724..171148 +
Ggra7487.t1.exon2Ggra7487.t1.exon2Gracilaria gracilis GNS1m maleexontig00000102_pilon 171227..171545 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7487.t1.intron1Ggra7487.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000102_pilon 171149..171226 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7487.t1.stop1Ggra7487.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000102_pilon 171543..171545 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7487.t1 ID=Ggra7487.t1|Name=Ggra7487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MPPGRRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQ
FAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYE
LGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALM
KLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQ
NKLNWDDQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT*
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spliced messenger RNA

>Ggra7487.t1 ID=Ggra7487.t1|Name=Ggra7487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000102_pilon:170724..171545+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGGACGTCGGCCCGGTGTAGGCGCAATCCGCGAGAACGTGAG
AAGGCGGGAAGAATTAGCAAAGCGAGGGGCAATGATATCTGCTGAAACCG
CACAACACATGAAGCAACAGTTGCAGACATTCAGAACGAATCTGGAACAG
TTTGCGATTAGTCATAAGAAAGAAATCCAGAGCGACGCTGCTTTTCGAGC
AAAGTTTCATGCGATGTGTGCGTCCATAGGAGTTGATCCTTTAACGTCTC
GAAAAGGAGTATGGTCAGACCTTTTGAATGTGGGTGACTATTACTATGAG
CTTGGTGTGCGAATAATTGAAGTTTGTGTGGCTACGAGGCCAACGAATGG
AGGGATCATTACGTTGAATGAACTTGTGACAGCTCTACGCACAAGAAGAA
TGACATACACGGAGAACGTTTCAAGTGACGACGTAGAGAGGGCCCTAATG
AAACTGGACGTTCTCGGGGGAGGCTTCAAAATTATGATGGTAGGTCACCG
AAAAGTGGTTCAGTCAGTACCCGTTGAGCTCAGCGTAGACCACACACGGG
CATTGGGAGCTTGCGAGGAAACTGGATATATAACTGCTTCTGCTCTTCAA
AACAAGCTCAACTGGGACGATCAAAGAATAAGGAATACACTTCGTTTTCT
ACTCGAGCATGAAATCGCATGGCTTGACCTTCAAACGGCAGAGCCTTCGT
ATTGGATACTTGGTCTTATGTCCGGCTCATCTACATTTACGTAA
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protein sequence of Ggra7487.t1

>Ggra7487.t1 ID=Ggra7487.t1|Name=Ggra7487.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MPPGRRPGVGAIRENVRRREELAKRGAMISAETAQHMKQQLQTFRTNLEQ
FAISHKKEIQSDAAFRAKFHAMCASIGVDPLTSRKGVWSDLLNVGDYYYE
LGVRIIEVCVATRPTNGGIITLNELVTALRTRRMTYTENVSSDDVERALM
KLDVLGGGFKIMMVGHRKVVQSVPVELSVDHTRALGACEETGYITASALQ
NKLNWDDQRIRNTLRFLLEHEIAWLDLQTAEPSYWILGLMSGSSTFT*
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mRNA from alignment at tig00000102_pilon:170724..171545+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7487.t1 ID=Ggra7487.t1|Name=Ggra7487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000102_pilon:170724..171545+ (Gracilaria gracilis GNS1m male)
ATGCCGCCCGGACGTCGGCCCGGTGTAGGCGCAATCCGCGAGAACGTGAG
AAGGCGGGAAGAATTAGCAAAGCGAGGGGCAATGATATCTGCTGAAACCG
CACAACACATGAAGCAACAGTTGCAGACATTCAGAACGAATCTGGAACAG
TTTGCGATTAGTCATAAGAAAGAAATCCAGAGCGACGCTGCTTTTCGAGC
AAAGTTTCATGCGATGTGTGCGTCCATAGGAGTTGATCCTTTAACGTCTC
GAAAAGGAGTATGGTCAGACCTTTTGAATGTGGGTGACTATTACTATGAG
CTTGGTGTGCGAATAATTGAAGTTTGTGTGGCTACGAGGCCAACGAATGG
AGGGATCATTACGTTGAATGAACTTGTGACAGCTCTACGCACAAGAAGAA
TGACATACACGGAGAACGTTTCAAGGTATGTGTGTTGAACACATATTGCG
ACTGCAAAACACTCGTCGCCTAACCTCATTCTTATATATGTCTTGTTTTG
CAGTGACGACGTAGAGAGGGCCCTAATGAAACTGGACGTTCTCGGGGGAG
GCTTCAAAATTATGATGGTAGGTCACCGAAAAGTGGTTCAGTCAGTACCC
GTTGAGCTCAGCGTAGACCACACACGGGCATTGGGAGCTTGCGAGGAAAC
TGGATATATAACTGCTTCTGCTCTTCAAAACAAGCTCAACTGGGACGATC
AAAGAATAAGGAATACACTTCGTTTTCTACTCGAGCATGAAATCGCATGG
CTTGACCTTCAAACGGCAGAGCCTTCGTATTGGATACTTGGTCTTATGTC
CGGCTCATCTACATTTACGTAA
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Coding sequence (CDS) from alignment at tig00000102_pilon:170724..171545+

>Ggra7487.t1 ID=Ggra7487.t1|Name=Ggra7487.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000102_pilon:170724..171545+ (Gracilaria gracilis GNS1m male)
ATGCCGCCCGGACGTCGGCCCGGTGTAGGCGCAATCCGCGAGAACGTGAG
AAGGCGGGAAGAATTAGCAAAGCGAGGGGCAATGATATCTGCTGAAACCG
CACAACACATGAAGCAACAGTTGCAGACATTCAGAACGAATCTGGAACAG
TTTGCGATTAGTCATAAGAAAGAAATCCAGAGCGACGCTGCTTTTCGAGC
AAAGTTTCATGCGATGTGTGCGTCCATAGGAGTTGATCCTTTAACGTCTC
GAAAAGGAGTATGGTCAGACCTTTTGAATGTGGGTGACTATTACTATGAG
CTTGGTGTGCGAATAATTGAAGTTTGTGTGGCTACGAGGCCAACGAATGG
AGGGATCATTACGTTGAATGAACTTGTGACAGCTCTACGCACAAGAAGAA
TGACATACACGGAGAACGTTTCAAGTGACGACGTAGAGAGGGCCCTAATG
AAACTGGACGTTCTCGGGGGAGGCTTCAAAATTATGATGGTAGGTCACCG
AAAAGTGGTTCAGTCAGTACCCGTTGAGCTCAGCGTAGACCACACACGGG
CATTGGGAGCTTGCGAGGAAACTGGATATATAACTGCTTCTGCTCTTCAA
AACAAGCTCAACTGGGACGATCAAAGAATAAGGAATACACTTCGTTTTCT
ACTCGAGCATGAAATCGCATGGCTTGACCTTCAAACGGCAGAGCCTTCGT
ATTGGATACTTGGTCTTATGTCCGGCTCATCTACATTTACGTAA
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