Ggra7254.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7254.t1
Unique NameGgra7254.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length177
Homology
BLAST of Ggra7254.t1 vs. uniprot
Match: A0A2V3J0X3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0X3_9FLOR)

HSP 1 Score: 229 bits (584), Expect = 3.100e-74
Identity = 108/145 (74.48%), Postives = 123/145 (84.83%), Query Frame = 0
Query:   31 YEACVEAYALCDWTFYNRSSLPTFDVSIPPDKPFSPVIVSKNNTVKLTVVNSNNAFTEFVFANGVLSPSVYEGKPRFGISTFKPFQTVNGSRLTHERFEGNQLQVASGTCLRTYFSEYQQIVAGRFENVKVARFDDKCVVYWTRA 175
            Y ACVEAY+ CDWTFYN SSLPT+++S P D  F+P+IVSKN +VKLTVVNSNNAFTEFV+  G+L PSVYEGKPRF ISTFKPFQ +NGSRL HER+ GNQ +VASG CLR YFS YQQ+V GR ENV+VARFDDKCVV+WT A
Sbjct:   29 YPACVEAYSKCDWTFYNVSSLPTYNISAPADTAFTPLIVSKNKSVKLTVVNSNNAFTEFVYKEGLL-PSVYEGKPRFRISTFKPFQGINGSRLAHERYTGNQERVASGRCLRVYFSSYQQLVTGRVENVRVARFDDKCVVFWTYA 172          
BLAST of Ggra7254.t1 vs. uniprot
Match: A0A2V3IGK2 (Collagen alpha-1(XXVIII) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGK2_9FLOR)

HSP 1 Score: 110 bits (274), Expect = 1.160e-25
Identity = 60/144 (41.67%), Postives = 89/144 (61.81%), Query Frame = 0
Query:   34 CVEAYALCDWTFYNRSSLPTFDVSIPPDKPFSPVIVSKNNTVKLTVVNSNNAFTEFVFANGVLSPSVYEGKPRFGISTFKPFQTVNG--SRLTHERFEGNQLQVASGTCLRTYFSEYQQIVAGRFENVK-VARFDDKCVVYWTR 174
            C +A+  C++TF  ++ L TF ++  PD+ F+P IVSK+ +V+L V+NSNN   EF+  NGV  P    G  RF  + FKP+  +NG  S + H+ F GNQ QVA   C+R YF+ +Q+I   +  N   V R ++KCVV+ T+
Sbjct:  211 CSKAFDECEFTFRGKTGLSTFSIAGRPDRSFTPRIVSKDASVRLGVLNSNNIVPEFIEDNGVF-PITNFGSQRFTPTHFKPYTLMNGQGSGIGHQTFHGNQKQVAKDRCIRVYFTHFQEIRNNKLINRNDVPRSENKCVVFRTQ 353          
The following BLAST results are available for this feature:
BLAST of Ggra7254.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J0X33.100e-7474.48Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IGK21.160e-2541.67Collagen alpha-1(XXVIII) chain n=1 Tax=Gracilariop... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..176
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:481202..481732 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7254.t1Ggra7254.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 481202..481732 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7254.t1 ID=Ggra7254.t1|Name=Ggra7254.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=177bp
MMLCTLLLFVAAFAGLGGAQRTGAVEYIVSYEACVEAYALCDWTFYNRSS
LPTFDVSIPPDKPFSPVIVSKNNTVKLTVVNSNNAFTEFVFANGVLSPSV
YEGKPRFGISTFKPFQTVNGSRLTHERFEGNQLQVASGTCLRTYFSEYQQ
IVAGRFENVKVARFDDKCVVYWTRAV*
back to top