Ggra7254.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7254.t1
Unique NameGgra7254.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:481202..481732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7254Ggra7254Gracilaria gracilis GNS1m malegenetig00000871_pilon 481202..481732 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7254.t1.stop1Ggra7254.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 481202..481204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7254.t1.CDS1Ggra7254.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 481202..481732 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7254.t1.exon1Ggra7254.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 481202..481732 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7254.t1.start1Ggra7254.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 481730..481732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7254.t1Ggra7254.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 481202..481732 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7254.t1 ID=Ggra7254.t1|Name=Ggra7254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=177bp
MMLCTLLLFVAAFAGLGGAQRTGAVEYIVSYEACVEAYALCDWTFYNRSS
LPTFDVSIPPDKPFSPVIVSKNNTVKLTVVNSNNAFTEFVFANGVLSPSV
YEGKPRFGISTFKPFQTVNGSRLTHERFEGNQLQVASGTCLRTYFSEYQQ
IVAGRFENVKVARFDDKCVVYWTRAV*
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spliced messenger RNA

>Ggra7254.t1 ID=Ggra7254.t1|Name=Ggra7254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00000871_pilon:481202..481732- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTTTGCACGCTCTTGTTGTTTGTGGCAGCCTTTGCTGGCTTGGG
AGGTGCCCAGAGGACTGGCGCCGTGGAGTACATCGTTTCGTATGAGGCGT
GTGTCGAGGCTTACGCGCTGTGTGATTGGACTTTTTACAACCGTTCTTCT
CTGCCCACCTTCGACGTATCCATTCCACCCGACAAGCCGTTCTCCCCTGT
GATAGTGTCGAAGAACAACACTGTCAAGCTCACCGTGGTGAATTCGAACA
ACGCCTTCACCGAGTTTGTGTTCGCCAACGGCGTCCTCAGCCCGTCCGTG
TACGAAGGAAAGCCCCGCTTTGGTATCAGCACGTTCAAGCCGTTCCAGAC
CGTCAATGGATCACGATTAACTCATGAGAGATTCGAAGGCAACCAGCTAC
AGGTTGCGAGCGGAACTTGTCTTCGCACCTACTTTTCGGAGTACCAACAG
ATTGTGGCCGGTCGTTTTGAGAATGTCAAGGTGGCTCGATTTGATGACAA
GTGTGTGGTCTACTGGACAAGAGCTGTGTGA
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protein sequence of Ggra7254.t1

>Ggra7254.t1 ID=Ggra7254.t1|Name=Ggra7254.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=177bp
MMLCTLLLFVAAFAGLGGAQRTGAVEYIVSYEACVEAYALCDWTFYNRSS
LPTFDVSIPPDKPFSPVIVSKNNTVKLTVVNSNNAFTEFVFANGVLSPSV
YEGKPRFGISTFKPFQTVNGSRLTHERFEGNQLQVASGTCLRTYFSEYQQ
IVAGRFENVKVARFDDKCVVYWTRAV*
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mRNA from alignment at tig00000871_pilon:481202..481732-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7254.t1 ID=Ggra7254.t1|Name=Ggra7254.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00000871_pilon:481202..481732- (Gracilaria gracilis GNS1m male)
ATGATGCTTTGCACGCTCTTGTTGTTTGTGGCAGCCTTTGCTGGCTTGGG
AGGTGCCCAGAGGACTGGCGCCGTGGAGTACATCGTTTCGTATGAGGCGT
GTGTCGAGGCTTACGCGCTGTGTGATTGGACTTTTTACAACCGTTCTTCT
CTGCCCACCTTCGACGTATCCATTCCACCCGACAAGCCGTTCTCCCCTGT
GATAGTGTCGAAGAACAACACTGTCAAGCTCACCGTGGTGAATTCGAACA
ACGCCTTCACCGAGTTTGTGTTCGCCAACGGCGTCCTCAGCCCGTCCGTG
TACGAAGGAAAGCCCCGCTTTGGTATCAGCACGTTCAAGCCGTTCCAGAC
CGTCAATGGATCACGATTAACTCATGAGAGATTCGAAGGCAACCAGCTAC
AGGTTGCGAGCGGAACTTGTCTTCGCACCTACTTTTCGGAGTACCAACAG
ATTGTGGCCGGTCGTTTTGAGAATGTCAAGGTGGCTCGATTTGATGACAA
GTGTGTGGTCTACTGGACAAGAGCTGTGTGA
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Coding sequence (CDS) from alignment at tig00000871_pilon:481202..481732-

>Ggra7254.t1 ID=Ggra7254.t1|Name=Ggra7254.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=531bp|location=Sequence derived from alignment at tig00000871_pilon:481202..481732- (Gracilaria gracilis GNS1m male)
ATGATGCTTTGCACGCTCTTGTTGTTTGTGGCAGCCTTTGCTGGCTTGGG
AGGTGCCCAGAGGACTGGCGCCGTGGAGTACATCGTTTCGTATGAGGCGT
GTGTCGAGGCTTACGCGCTGTGTGATTGGACTTTTTACAACCGTTCTTCT
CTGCCCACCTTCGACGTATCCATTCCACCCGACAAGCCGTTCTCCCCTGT
GATAGTGTCGAAGAACAACACTGTCAAGCTCACCGTGGTGAATTCGAACA
ACGCCTTCACCGAGTTTGTGTTCGCCAACGGCGTCCTCAGCCCGTCCGTG
TACGAAGGAAAGCCCCGCTTTGGTATCAGCACGTTCAAGCCGTTCCAGAC
CGTCAATGGATCACGATTAACTCATGAGAGATTCGAAGGCAACCAGCTAC
AGGTTGCGAGCGGAACTTGTCTTCGCACCTACTTTTCGGAGTACCAACAG
ATTGTGGCCGGTCGTTTTGAGAATGTCAAGGTGGCTCGATTTGATGACAA
GTGTGTGGTCTACTGGACAAGAGCTGTGTGA
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