Ggra7251.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7251.t1
Unique NameGgra7251.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length754
Homology
BLAST of Ggra7251.t1 vs. uniprot
Match: R7QE19 (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE19_CHOCR)

HSP 1 Score: 169 bits (427), Expect = 1.430e-39
Identity = 175/667 (26.24%), Postives = 282/667 (42.28%), Query Frame = 0
Query:  138 PNLTGNQIVRELRNDCTPEQLFQHKLTQNLSLFSSLARLINRVGGNLSINSN-RTLPPLAHTIYINHEDINTAIKLLDDSQAILPPQAQPPVENPISFGLVDPLFTGTIPPTTNSPPEEPAHFNTIHIRTHRQNSQDHPPNRNESKPNNSKLTHSVAMRFKDKSSKVSGAIGESWEEFFTEYKLALAHYDVPSDRQISFMHHILRDKAKRFFLQKIFDRVDSLDMASDLMENQYNSTARKKRIENQLNAIRFESYEKNEGSSTKALETLEADISKLAPQGPANCYLD-------------------------TEQLNFQEFYTQLECAIQRENEEKIA------RKKTNPFGSSSKSELFDTN----YNSGP------------PARYGRYKHSRKNYRNNYRFRKNVI--CFGCGEEGHVIRNCKNPQDLSTVASRKVQHLQCSGKLNSQNKALKHVLYELRTQTQDGSEDESDFEDPNTFFETKDVP--DDALEANDEGDSDSDEIIDEQPNPFKSCYMQFDIDNSTSPLDFGQTRKDALKRKLHSVPKGTAHKLRRYLKRKFTCFLVSRDDLEFSCNQEFIGGCLDIGAQRSVIGHKQAKAYCTKYGIEMKKRKSNI--LFRLEDNIFNSIAQIPIRIFAPQGRIIKLTVDVIDCDIPFLLGLD 750
            P+LTG  + R + +   P  LF+ ++    ++   L   ++  G NL+ +S+ R +  LAH +Y   ED   AI++  +  A    Q +P   +  S G   P     +P T+ S       F+T                         K+ H+VAMR K+K  K SG +GESW E+  +Y      Y++   +++ F+H++LR  AKR++L KI     S   A  ++E +YNS  R+ R++N LN++R   +       + AL      I   + QGP +   D                         T QL FQ+ Y++LE A+Q + E KIA      +         S + +  T     YN+ P            P   GR   S    +   +F    +  CF CG   H++R+C  P + S  A+RK+++   + K +++  A+ HVL +L  Q   GS  E D E+     ET D+   +  L  ND  D                     D+D++  P D G    DA+                         +L S+     + +  F G C+D  AQ+SV+G +QAKAYC+ + +      SN   +F    +    +  + +R+       I L+V+V+D ++PFLLGLD
Sbjct:   61 PDLTGIHLKRTVADMFPPASLFRQEICDLPAVHIELRNFLDAKGANLAQHSSHRVVMTLAHGLYEETEDTQAAIEMAREIIAAGRRQ-RPHAPSSSSHGEQSP-----VPRTSGS-------FSTP----------------------TEKVAHNVAMRMKEKEKKFSGDLGESWMEYVDDYLQISRDYNLSPPQRLQFLHNLLRGDAKRYYLDKIDGYATSFQQAIQMLEEEYNSPVRQTRVKNYLNSLRVTVFAAEGKEMSAALALTYKSIIIFSRQGPRSHQGDAHKVEFLRNAVVGMPWSSEPLSRVATHQLTFQQLYSELEAALQLDKESKIAIIRDHAQLNQRSVSHDSWAGILYTGQGRYYNNSPYPRERDQTSTRQPRFGGRAFRSPSTTKQKVKFNPLTVSGCFNCGGN-HLLRDCTLPLNTSRAATRKMEYY--AKKADTKPIAVHHVLADLCKQLDIGSVPEDDSEEET---ETTDITIFESILSGNDTTD---------------------DVDSTEHPTDSGC---DAINH----------------------VYLTSKS-WNVTVSDPFHGICIDSAAQKSVVGVEQAKAYCSLFNVPYSPSTSNAKNVFSFGTHKHLGLGLLTVRVPIAPTHFISLSVEVVDTNVPFLLGLD 639          
BLAST of Ggra7251.t1 vs. uniprot
Match: W0GEX7 (Polyprotein n=1 Tax=Chondrus crispus TaxID=2769 RepID=W0GEX7_CHOCR)

HSP 1 Score: 92.8 bits (229), Expect = 1.530e-15
Identity = 133/518 (25.68%), Postives = 215/518 (41.51%), Query Frame = 0
Query:  292 VAMRFKDKSSKVSGAIGESWEEFFTEYKLALAHYDVPSDRQISFMHHILRDKAKRFFLQKI------FDRVDSLDMASDLMENQYNSTARKKRIENQLNAIRFESYEKNEGSSTKALETLEADISKLAPQGPANCYLDTEQ-----------------------LNFQEFYTQL-------ECAIQRENEEKIARKKTNPFGSSSKSELFDTNYN---SGPPARYGRYKHSRKNYRNNYRFRKNVICFGCGEEGHVIRNCKN-PQDLSTVASRKVQHLQCSGKLNSQNKALKHVLYELRTQTQD-------------GSEDESDFEDPNTFFETKDVPDDALEANDEGDSDSDEIIDEQPNPFKSCYM--QFDIDNSTSPLDFGQTRKDALKRKLHSVP-KGTAHKLRRYLKRKFTCFLVSRDDLEFSCNQEFIGGCLDIGAQRSVIGHKQAKAYCTKYGIEMKKRKSNILFRLEDNIFNSIAQIPIRIFAPQGRIIKLTVDVIDCDIPFLLGLDFLD 753
            +A RFKD++ K +G  GE+WE+ ++ Y      + VP    +  +  IL  +AK ++ +K+      F   D ++    +++  +   A++  IE+ L+++      + +GS    L  +  +I K     P     D +Q                       ++F   Y  L       E A++  +E    R K     S  +  LF   Y    S P       +H+ K    + +FR N  C+GCG+ G+   +C +  +D  T    + + L+   ++    + L  V+ EL+ Q  D             GS++E+  +D     E         +   EG +D +E  DE+   F   +     DI ++T+ +    T      R L  +P   T H               S DD      + F G CLD GA  SV G  QAKAY +  G + K +KSN +FR   N   S+  I IRI  P    ++L VDV++ DIP L+GLD LD
Sbjct:  267 LATRFKDRADKYAGNEGENWEDVYSSYINCADQWGVPEGAALRNIETILHGEAKTYYKRKVQANPNYFQTCDEVNKF--ILDTFHGREAQEATIEH-LDSLSMYEQAQRQGSLVAGLRAVRDEIIKHVNLVPKGRQTDLDQKRWLKNAVRQYRWARPTTARAHDMDFARMYATLRSQAIEEERAMENRSERGRYRSKVGDK-SLGRRILFGDMYGRDISNP-------RHTPKP--GDGQFRGN--CYGCGKRGYRRADCPDCKRDGRTFEPDRKKALKAIHEVTEMKEVLL-VMGELQDQYGDRFEDLLGMARGESGSQEEAGEQDIGLAIED--------DQRHEG-TDGEEHDDEKEGGFIEQFHIHMTDIISTTNDI---ATSTHQQSRDLDEIPIHETEH---------------SDDD------KTFRGACLDTGATTSVCGLNQAKAYASFAGFKYKPKKSNKVFRFGGNRARSMGTIVIRIPIPGNLYVELKVDVVEHDIPLLIGLDALD 735          
BLAST of Ggra7251.t1 vs. uniprot
Match: R7QHR7 (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHR7_CHOCR)

HSP 1 Score: 77.8 bits (190), Expect = 2.260e-11
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 0
Query:  665 NQEFIGGCLDIGAQRSVIGHKQAKAYCTKYGIEMKKRKSNILFRLEDNIFNSIAQIPIRI-FAPQGRIIKLTVDVIDCDIPFLLGLDFLD 753
            +  F G CLD GA++SVIG+ QAKAYC  +G  M  + S   ++  D I +S+  + IR+ FAP G  + L+VDV+  DIP L+ LD LD
Sbjct:   70 SSRFCGACLDTGAEKSVIGYAQAKAYCKTFGTPMHLQPSPFFYKFGDGIRSSLGTMEIRLPFAP-GYFVPLSVDVVSADIPLLIALDTLD 158          
BLAST of Ggra7251.t1 vs. uniprot
Match: A0A1X6P0Y0 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0Y0_PORUM)

HSP 1 Score: 61.6 bits (148), Expect = 3.010e-7
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 0
Query:  666 QEFIGGCLDIGAQRSVIGHKQAKAYCTKYGIEMKKRK-SNILFRLEDNIFNSIAQIPIRIFAPQGRIIKLTVDVIDCDIPFLLGLDFLD 753
            +EF G  LD GA+R+VIGH+QA AY    GI+M+  K S  +FR     + S+  + +++       + + VDV+  ++P LLGLD +D
Sbjct:   13 KEFQGAFLDTGAERTVIGHRQAAAYARFAGIKMRLDKTSRAVFRFGGPGYPSLGTLHVKVPYANNLFLPMEVDVVALNVPILLGLDTMD 101          
BLAST of Ggra7251.t1 vs. uniprot
Match: R7Q465 (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q465_CHOCR)

HSP 1 Score: 62.8 bits (151), Expect = 2.410e-6
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 0
Query:  667 EFIGGCLDIGAQRSVIGHKQAKAYCTKYGIEMKKRKSNI--LFRLEDNIFNSIAQIPIRIFAPQGRIIKLTVDVIDCDIPFLLGLDFLD 753
            +F+G C+D GAQRSVIG  QA+AY    GI     +S    +++   + +  +  + IRI     + I   V V+D D+P LLGL+FLD
Sbjct:  105 DFLGACIDTGAQRSVIGKPQAEAYYIFMGIPFCLEQSGHPRVYKFGAHRYKGLGSVFIRIPVDSNQFIFTEVQVVDLDVPLLLGLEFLD 193          
BLAST of Ggra7251.t1 vs. uniprot
Match: R7QGK3 (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGK3_CHOCR)

HSP 1 Score: 60.8 bits (146), Expect = 9.240e-6
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 0
Query:  668 FIGGCLDIGAQRSVIGHKQAKAYCTKYGIEMKKRKSNI--LFRLEDNIFNSIAQIPIRIFAPQGRIIKLTVDVIDCDIPFLLGLD 750
            F G C+D  AQRSV+G +QAKAYC+ + +      SN   +F    +    +  + +R+       I L+V+V+D ++PFLLGLD
Sbjct:   93 FHGICIDSAAQRSVVGVEQAKAYCSLFNVPFSPSASNARNIFSFGTHKHVGLGLLTVRVPIAPTHFISLSVEVVDTNVPFLLGLD 177          
The following BLAST results are available for this feature:
BLAST of Ggra7251.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
R7QE191.430e-3926.24Integrase catalytic domain-containing protein n=1 ... [more]
W0GEX71.530e-1525.68Polyprotein n=1 Tax=Chondrus crispus TaxID=2769 Re... [more]
R7QHR72.260e-1145.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A1X6P0Y03.010e-738.20Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7Q4652.410e-639.33Integrase catalytic domain-containing protein n=1 ... [more]
R7QGK39.240e-637.65Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 498..514
e-value: 0.0031
score: 26.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 499..514
score: 9.965892
NoneNo IPR availableGENE3D4.10.60.10coord: 493..544
e-value: 1.5E-5
score: 27.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 574..594
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 580..594
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..82
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 483..517

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:463168..465504 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7251.t1Ggra7251.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 463168..465504 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7251.t1 ID=Ggra7251.t1|Name=Ggra7251.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=754bp
MLRLRTPSAPPKNSQQAVGRNPTGSHPESGSTAGLLNPGPSKPEASTRTP
INRNTGSSSSPMPTNNVSIHRHSTLPSGTTLNPPLRSPFPAPRSSIPHIS
QYGPSNIHTNFFGEHLIIHNEPQPNLWEAIRSYQLYIPNLTGNQIVRELR
NDCTPEQLFQHKLTQNLSLFSSLARLINRVGGNLSINSNRTLPPLAHTIY
INHEDINTAIKLLDDSQAILPPQAQPPVENPISFGLVDPLFTGTIPPTTN
SPPEEPAHFNTIHIRTHRQNSQDHPPNRNESKPNNSKLTHSVAMRFKDKS
SKVSGAIGESWEEFFTEYKLALAHYDVPSDRQISFMHHILRDKAKRFFLQ
KIFDRVDSLDMASDLMENQYNSTARKKRIENQLNAIRFESYEKNEGSSTK
ALETLEADISKLAPQGPANCYLDTEQLNFQEFYTQLECAIQRENEEKIAR
KKTNPFGSSSKSELFDTNYNSGPPARYGRYKHSRKNYRNNYRFRKNVICF
GCGEEGHVIRNCKNPQDLSTVASRKVQHLQCSGKLNSQNKALKHVLYELR
TQTQDGSEDESDFEDPNTFFETKDVPDDALEANDEGDSDSDEIIDEQPNP
FKSCYMQFDIDNSTSPLDFGQTRKDALKRKLHSVPKGTAHKLRRYLKRKF
TCFLVSRDDLEFSCNQEFIGGCLDIGAQRSVIGHKQAKAYCTKYGIEMKK
RKSNILFRLEDNIFNSIAQIPIRIFAPQGRIIKLTVDVIDCDIPFLLGLD
FLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf