Ggra7251.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7251.t1
Unique Name	Ggra7251.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	754

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000871_pilon	contig	tig00000871_pilon:463168..465504 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7251	Ggra7251	Gracilaria gracilis GNS1m male	gene	tig00000871_pilon 463168..465504 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7251.t1	Ggra7251.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000871_pilon 463168..465504 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7251.t1.start1	Ggra7251.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000871_pilon 463168..463170 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7251.t1.CDS1	Ggra7251.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000871_pilon 463168..464429 +
Ggra7251.t1.CDS2	Ggra7251.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000871_pilon 464505..465504 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7251.t1.exon1	Ggra7251.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000871_pilon 463168..464429 +
Ggra7251.t1.exon2	Ggra7251.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000871_pilon 464505..465504 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7251.t1.intron1	Ggra7251.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000871_pilon 464430..464504 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7251.t1.stop1	Ggra7251.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000871_pilon 465502..465504 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000871_pilon:463168..465504+
coding sequence from alignment at tig00000871_pilon:463168..465504+

mRNA sequence

>Ggra7251.t1 ID=Ggra7251.t1|Name=Ggra7251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=754bp
MLRLRTPSAPPKNSQQAVGRNPTGSHPESGSTAGLLNPGPSKPEASTRTP
INRNTGSSSSPMPTNNVSIHRHSTLPSGTTLNPPLRSPFPAPRSSIPHIS
QYGPSNIHTNFFGEHLIIHNEPQPNLWEAIRSYQLYIPNLTGNQIVRELR
NDCTPEQLFQHKLTQNLSLFSSLARLINRVGGNLSINSNRTLPPLAHTIY
INHEDINTAIKLLDDSQAILPPQAQPPVENPISFGLVDPLFTGTIPPTTN
SPPEEPAHFNTIHIRTHRQNSQDHPPNRNESKPNNSKLTHSVAMRFKDKS
SKVSGAIGESWEEFFTEYKLALAHYDVPSDRQISFMHHILRDKAKRFFLQ
KIFDRVDSLDMASDLMENQYNSTARKKRIENQLNAIRFESYEKNEGSSTK
ALETLEADISKLAPQGPANCYLDTEQLNFQEFYTQLECAIQRENEEKIAR
KKTNPFGSSSKSELFDTNYNSGPPARYGRYKHSRKNYRNNYRFRKNVICF
GCGEEGHVIRNCKNPQDLSTVASRKVQHLQCSGKLNSQNKALKHVLYELR
TQTQDGSEDESDFEDPNTFFETKDVPDDALEANDEGDSDSDEIIDEQPNP
FKSCYMQFDIDNSTSPLDFGQTRKDALKRKLHSVPKGTAHKLRRYLKRKF
TCFLVSRDDLEFSCNQEFIGGCLDIGAQRSVIGHKQAKAYCTKYGIEMKK
RKSNILFRLEDNIFNSIAQIPIRIFAPQGRIIKLTVDVIDCDIPFLLGLD
FLD*

spliced messenger RNA

>Ggra7251.t1 ID=Ggra7251.t1|Name=Ggra7251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2262bp|location=Sequence derived from alignment at tig00000871_pilon:463168..465504+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgcttcgcttaaggaccccaagtgcccctccgaagaactcacagcaggc
agtaggacgaaacccaaccggttcgcaccccgaatcaggatcaaccgctg
gacttttaaacccaggaccttccaaaccagaagcttccacaaggacccca
atcaatcgtaacacgggctcgtctagttccccgatgcctacgaataacgt
ttcaattcatcgtcactccactctcccttcgggtactacccttaatcctc
cgcttcgttcaccctttcctgccccgcgatcatcaattccccacatttct
caatatgggccatcaaatattcacacgaacttttttggagaacatttgat
catacacaatgaaccgcagcctaatctttgggaagctattcgatcctatc
aactatatattccaaacctcaccggaaatcaaattgttcgagaacttcgc
aatgattgcacacccgagcagttatttcagcacaaattaactcaaaatct
gagtctattcagctctttggctaggctgattaatcgagttggtggaaacc
tgtccattaattcaaatcgtacactccctcctcttgctcatacaatttat
atcaaccatgaagatattaatacagctataaaattacttgacgactcaca
agccattctcccgccacaggcacaaccacctgttgagaatcctatttctt
tcggccttgttgaccccctttttactggtacaatccctcccaccaccaat
tcccctcctgaagaacctgcgcatttcaacaccatacacattcgaactca
tcgtcaaaattctcaggaccaccctcctaatcggaatgagtcaaagccta
ataactcaaaattaacacacagtgtggcaatgcgcttcaaagacaagtcc
tctaaagtttctggagcaattggtgaatcctgggaagaattctttacgga
atacaaattagccctggctcactacgatgttccctcggataggcaaattt
cctttatgcaccatatccttcgtgacaaggctaagagatttttcttgcaa
aagatattcgatcgtgttgattcactcgatatggcaagtgatctcatgga
aaatcaatacaattctactgcacggaagaaacgaattgaaaaccaattga
acgccatccgttttgaaagttacgagaaaaacgaaggcagcagtaccaag
gctttggaaacacttgaagctgacatttctaaacttgcaccgcaaggtcc
tgctaattgttatttggatactgaacagcttaacttccaagaattctaca
cccaattggaatgtgccatccaacgtgagaatgaagagaagatagctcgg
aagaaaacaaacccatttggttcctcatccaagtccgaactgttcgacac
aaattacaattctggccctcccgctcgttacggtcgatacaagcatagtc
gaaagaactatcgaaacaactatcgcttccgcaagaatgtaatctgcttt
ggatgtggtgaagaaggtcacgtaatcagaaattgtaagaacccccagga
tctctccacagtcgcctcccgtaaggtacaacatcttcaatgttctggta
aactcaactcacagaacaaagccctcaaacacgtactgtacgagcttcgc
acccaaacccaggatggtagtgaggatgaatcagattttgaagacccgaa
cacattcttcgaaacaaaagatgtgcccgatgatgccttagaggctaatg
acgaaggagattctgactccgacgaaatcattgacgaacagcccaatcct
ttcaagagttgctacatgcaatttgacatcgacaactccacctcacctct
ggactttggccaaactcgcaaagacgcactgaaacgcaaacttcacagtg
ttccaaaaggtacagcacataaactccgaagatatttgaaacgcaaattt
acgtgttttttggtatcaagggacgatttggaattctcttgtaatcagga
atttattggtggatgtctcgatattggcgcacaacgctctgtcattggtc
ataagcaagctaaagcatattgcaccaagtacggtatcgaaatgaagaaa
cgcaaaagcaacattttgttccgtttggaagacaacattttcaacagcat
tgcccaaatccccatccgaattttcgcaccgcaaggacgcatcataaagc
taacggtcgacgttattgattgtgatatcccatttctacttggcctagac
ttccttgattga

protein sequence of Ggra7251.t1

>Ggra7251.t1 ID=Ggra7251.t1|Name=Ggra7251.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=754bp
MLRLRTPSAPPKNSQQAVGRNPTGSHPESGSTAGLLNPGPSKPEASTRTP
INRNTGSSSSPMPTNNVSIHRHSTLPSGTTLNPPLRSPFPAPRSSIPHIS
QYGPSNIHTNFFGEHLIIHNEPQPNLWEAIRSYQLYIPNLTGNQIVRELR
NDCTPEQLFQHKLTQNLSLFSSLARLINRVGGNLSINSNRTLPPLAHTIY
INHEDINTAIKLLDDSQAILPPQAQPPVENPISFGLVDPLFTGTIPPTTN
SPPEEPAHFNTIHIRTHRQNSQDHPPNRNESKPNNSKLTHSVAMRFKDKS
SKVSGAIGESWEEFFTEYKLALAHYDVPSDRQISFMHHILRDKAKRFFLQ
KIFDRVDSLDMASDLMENQYNSTARKKRIENQLNAIRFESYEKNEGSSTK
ALETLEADISKLAPQGPANCYLDTEQLNFQEFYTQLECAIQRENEEKIAR
KKTNPFGSSSKSELFDTNYNSGPPARYGRYKHSRKNYRNNYRFRKNVICF
GCGEEGHVIRNCKNPQDLSTVASRKVQHLQCSGKLNSQNKALKHVLYELR
TQTQDGSEDESDFEDPNTFFETKDVPDDALEANDEGDSDSDEIIDEQPNP
FKSCYMQFDIDNSTSPLDFGQTRKDALKRKLHSVPKGTAHKLRRYLKRKF
TCFLVSRDDLEFSCNQEFIGGCLDIGAQRSVIGHKQAKAYCTKYGIEMKK
RKSNILFRLEDNIFNSIAQIPIRIFAPQGRIIKLTVDVIDCDIPFLLGLD
FLD*

mRNA from alignment at tig00000871_pilon:463168..465504+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7251.t1 ID=Ggra7251.t1|Name=Ggra7251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2337bp|location=Sequence derived from alignment at tig00000871_pilon:463168..465504+ (Gracilaria gracilis GNS1m male)
atgcttcgcttaaggaccccaagtgcccctccgaagaactcacagcaggc
agtaggacgaaacccaaccggttcgcaccccgaatcaggatcaaccgctg
gacttttaaacccaggaccttccaaaccagaagcttccacaaggacccca
atcaatcgtaacacgggctcgtctagttccccgatgcctacgaataacgt
ttcaattcatcgtcactccactctcccttcgggtactacccttaatcctc
cgcttcgttcaccctttcctgccccgcgatcatcaattccccacatttct
caatatgggccatcaaatattcacacgaacttttttggagaacatttgat
catacacaatgaaccgcagcctaatctttgggaagctattcgatcctatc
aactatatattccaaacctcaccggaaatcaaattgttcgagaacttcgc
aatgattgcacacccgagcagttatttcagcacaaattaactcaaaatct
gagtctattcagctctttggctaggctgattaatcgagttggtggaaacc
tgtccattaattcaaatcgtacactccctcctcttgctcatacaatttat
atcaaccatgaagatattaatacagctataaaattacttgacgactcaca
agccattctcccgccacaggcacaaccacctgttgagaatcctatttctt
tcggccttgttgaccccctttttactggtacaatccctcccaccaccaat
tcccctcctgaagaacctgcgcatttcaacaccatacacattcgaactca
tcgtcaaaattctcaggaccaccctcctaatcggaatgagtcaaagccta
ataactcaaaattaacacacagtgtggcaatgcgcttcaaagacaagtcc
tctaaagtttctggagcaattggtgaatcctgggaagaattctttacgga
atacaaattagccctggctcactacgatgttccctcggataggcaaattt
cctttatgcaccatatccttcgtgacaaggctaagagatttttcttgcaa
aagatattcgatcgtgttgattcactcgatatggcaagtgatctcatgga
aaatcaatacaattctactgcacggaagaaacgaattgaaaaccaattga
acgccatccgttttgaaagttacgagaaaaacgaaggcagcagtaccaag
gctttggaaacacttgaagctgacatttctaaacttgcaccgcaaggtcc
tgctaattgttagtctgaagcctgtcgtattggatttatccgtaaggccg
ttgtcggcaacacttgggctactctcccctttgcaagtttggatactgaa
cagcttaacttccaagaattctacacccaattggaatgtgccatccaacg
tgagaatgaagagaagatagctcggaagaaaacaaacccatttggttcct
catccaagtccgaactgttcgacacaaattacaattctggccctcccgct
cgttacggtcgatacaagcatagtcgaaagaactatcgaaacaactatcg
cttccgcaagaatgtaatctgctttggatgtggtgaagaaggtcacgtaa
tcagaaattgtaagaacccccaggatctctccacagtcgcctcccgtaag
gtacaacatcttcaatgttctggtaaactcaactcacagaacaaagccct
caaacacgtactgtacgagcttcgcacccaaacccaggatggtagtgagg
atgaatcagattttgaagacccgaacacattcttcgaaacaaaagatgtg
cccgatgatgccttagaggctaatgacgaaggagattctgactccgacga
aatcattgacgaacagcccaatcctttcaagagttgctacatgcaatttg
acatcgacaactccacctcacctctggactttggccaaactcgcaaagac
gcactgaaacgcaaacttcacagtgttccaaaaggtacagcacataaact
ccgaagatatttgaaacgcaaatttacgtgttttttggtatcaagggacg
atttggaattctcttgtaatcaggaatttattggtggatgtctcgatatt
ggcgcacaacgctctgtcattggtcataagcaagctaaagcatattgcac
caagtacggtatcgaaatgaagaaacgcaaaagcaacattttgttccgtt
tggaagacaacattttcaacagcattgcccaaatccccatccgaattttc
gcaccgcaaggacgcatcataaagctaacggtcgacgttattgattgtga
tatcccatttctacttggcctagacttccttgattga

Coding sequence (CDS) from alignment at tig00000871_pilon:463168..465504+

>Ggra7251.t1 ID=Ggra7251.t1|Name=Ggra7251.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2262bp|location=Sequence derived from alignment at tig00000871_pilon:463168..465504+ (Gracilaria gracilis GNS1m male)
atgcttcgcttaaggaccccaagtgcccctccgaagaactcacagcaggc
agtaggacgaaacccaaccggttcgcaccccgaatcaggatcaaccgctg
gacttttaaacccaggaccttccaaaccagaagcttccacaaggacccca
atcaatcgtaacacgggctcgtctagttccccgatgcctacgaataacgt
ttcaattcatcgtcactccactctcccttcgggtactacccttaatcctc
cgcttcgttcaccctttcctgccccgcgatcatcaattccccacatttct
caatatgggccatcaaatattcacacgaacttttttggagaacatttgat
catacacaatgaaccgcagcctaatctttgggaagctattcgatcctatc
aactatatattccaaacctcaccggaaatcaaattgttcgagaacttcgc
aatgattgcacacccgagcagttatttcagcacaaattaactcaaaatct
gagtctattcagctctttggctaggctgattaatcgagttggtggaaacc
tgtccattaattcaaatcgtacactccctcctcttgctcatacaatttat
atcaaccatgaagatattaatacagctataaaattacttgacgactcaca
agccattctcccgccacaggcacaaccacctgttgagaatcctatttctt
tcggccttgttgaccccctttttactggtacaatccctcccaccaccaat
tcccctcctgaagaacctgcgcatttcaacaccatacacattcgaactca
tcgtcaaaattctcaggaccaccctcctaatcggaatgagtcaaagccta
ataactcaaaattaacacacagtgtggcaatgcgcttcaaagacaagtcc
tctaaagtttctggagcaattggtgaatcctgggaagaattctttacgga
atacaaattagccctggctcactacgatgttccctcggataggcaaattt
cctttatgcaccatatccttcgtgacaaggctaagagatttttcttgcaa
aagatattcgatcgtgttgattcactcgatatggcaagtgatctcatgga
aaatcaatacaattctactgcacggaagaaacgaattgaaaaccaattga
acgccatccgttttgaaagttacgagaaaaacgaaggcagcagtaccaag
gctttggaaacacttgaagctgacatttctaaacttgcaccgcaaggtcc
tgctaattgttatttggatactgaacagcttaacttccaagaattctaca
cccaattggaatgtgccatccaacgtgagaatgaagagaagatagctcgg
aagaaaacaaacccatttggttcctcatccaagtccgaactgttcgacac
aaattacaattctggccctcccgctcgttacggtcgatacaagcatagtc
gaaagaactatcgaaacaactatcgcttccgcaagaatgtaatctgcttt
ggatgtggtgaagaaggtcacgtaatcagaaattgtaagaacccccagga
tctctccacagtcgcctcccgtaaggtacaacatcttcaatgttctggta
aactcaactcacagaacaaagccctcaaacacgtactgtacgagcttcgc
acccaaacccaggatggtagtgaggatgaatcagattttgaagacccgaa
cacattcttcgaaacaaaagatgtgcccgatgatgccttagaggctaatg
acgaaggagattctgactccgacgaaatcattgacgaacagcccaatcct
ttcaagagttgctacatgcaatttgacatcgacaactccacctcacctct
ggactttggccaaactcgcaaagacgcactgaaacgcaaacttcacagtg
ttccaaaaggtacagcacataaactccgaagatatttgaaacgcaaattt
acgtgttttttggtatcaagggacgatttggaattctcttgtaatcagga
atttattggtggatgtctcgatattggcgcacaacgctctgtcattggtc
ataagcaagctaaagcatattgcaccaagtacggtatcgaaatgaagaaa
cgcaaaagcaacattttgttccgtttggaagacaacattttcaacagcat
tgcccaaatccccatccgaattttcgcaccgcaaggacgcatcataaagc
taacggtcgacgttattgattgtgatatcccatttctacttggcctagac
ttccttgattga