Ggra7244.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7244.t1
Unique NameGgra7244.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Homology
BLAST of Ggra7244.t1 vs. uniprot
Match: A0A2V3J110 (Hyperpolarization-activated voltage-gated potassium channel n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J110_9FLOR)

HSP 1 Score: 264 bits (675), Expect = 3.550e-83
Identity = 146/318 (45.91%), Postives = 179/318 (56.29%), Query Frame = 0
Query:  105 NPPRIPLPPDQRQVFSAGETPAVRNSYPPGRLPMALELDFVLNHPATDGIIALLVVLNCLAFALQTLDVGPMWHQAFRSYENNVSMVFLMEFFGRWYGKGLSPRFLLTRG----------------------------------------------------------------------------------------------------------FGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERYRKI-KQSKRETIPI--MDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFCRNCGCLLGKRRFD 313
             PPR+ +PP  R+VFSAGE P V+  +PPGRLP+++ELDFV+NHP T+ I+ALLV+LNCLAFALQTLDVGPM  +AFRSYENNV++ FLMEFF RWYGKGLSPR+LLTRG                                                                                                          FGDV+P+T WGR++TVLTVLTGAVLIP+K+SEIER+R I KQ+K  T  +  +++P  +NE++   LFD + EC +CNLRGHQRDARFCRNCG LL KRRFD
Sbjct:   50 TPPRVSVPPQSRKVFSAGEAPPVQGFFPPGRLPLSVELDFVINHPVTEAIVALLVILNCLAFALQTLDVGPMLQEAFRSYENNVTIAFLMEFFARWYGKGLSPRYLLTRGMIVDFIAVAPIGFTFVDQSEVIFVRILRLSRILRLQRIIMDTEASRGFMERMTNAQARLANVGLSLFSLLYVSAGLFYQVEKDVNPGVLNFFDAFYFSTITLFTVGFGDVAPVTGWGRLVTVLTVLTGAVLIPFKISEIERFRTISKQAKNTTFGVYPLETPQRMNEIITTVLFDSSVECNRCNLRGHQRDARFCRNCGNLLSKRRFD 367          
BLAST of Ggra7244.t1 vs. uniprot
Match: R7QSY6 (Ion_trans_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSY6_CHOCR)

HSP 1 Score: 194 bits (494), Expect = 4.500e-56
Identity = 123/311 (39.55%), Postives = 145/311 (46.62%), Query Frame = 0
Query:  107 PRIPLPPDQRQVFSAGETPAVRNSYPPGRLPMALELDFVLNHPATDGIIALLVVLNCLAFALQTLDVGPMWHQAFRSYENNVSMVFLMEFFGRWYGKGLSPRFLLTR--------------------------------------------------------------------------------------------------------GFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERYRKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFCRNCGCLLGKRRFD 313
            P + L     Q++SAGE P V   +PPG LP ++ELDFVLNHP TD IIA L+ LNCLAFALQT+DVGP  H+AF SYE+N+S+VFL+E+FGRWYGKGLSPRFLLTR                                                                                                        GFGDV+PLT  G+ ITV+TVLTGAV+IP+KLS IE   K K+   E                       + C QC L GHQ DARFCRNCG LL K+RFD
Sbjct:   74 PSVSLKRTPNQIWSAGERPPVNGIFPPGNLPFSVELDFVLNHPITDTIIAFLLALNCLAFALQTIDVGPELHRAFESYESNLSIVFLIEYFGRWYGKGLSPRFLLTRDMLLDFVAVSPIGFAFVDQSEALFVRILRLTRIFRIQRVFLDPANSIMDGMSGAQLRLASIGLSLFSLLYVSAGLFYQVEKDVNPAVLNFFDAFYFSTVTLFTVGFGDVTPLTPMGKTITVMTVLTGAVIIPFKLSAIETITKTKRRLSEA-------------------SAPSPCNQCFLIGHQIDARFCRNCGALLRKKRFD 365          
BLAST of Ggra7244.t1 vs. uniprot
Match: potassium channel family protein n=1 Tax=Leptolyngbya sp. FACHB-711 TaxID=2692813 RepID=UPI001688FE8A (potassium channel family protein n=1 Tax=Leptolyngbya sp. FACHB-711 TaxID=2692813 RepID=UPI001688FE8A)

HSP 1 Score: 65.9 bits (159), Expect = 3.920e-10
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 0
Query:  210 LLTRGFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERYRKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFCRNCG 304
            + T GFGD++P++  GR++TVL +LTG  LIP++L ++     IKQ                  +IK+   +   C  C L  H RDA+FC+NCG
Sbjct:   10 MTTVGFGDITPISQTGRLLTVLMILTGIALIPWQLGDL-----IKQ------------------LIKTSNQVETICAACGLESHDRDAKFCKNCG 81          
BLAST of Ggra7244.t1 vs. uniprot
Match: ion transporter n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI000B5988DF (ion transporter n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI000B5988DF)

HSP 1 Score: 65.1 bits (157), Expect = 1.680e-8
Identity = 33/95 (34.74%), Postives = 50/95 (52.63%), Query Frame = 0
Query:  210 LLTRGFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERYRKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFCRNCG 304
            + T GFGD++P++  GR++TVL +LTG  LIP+++ ++ R      ++ ET+                       C QC L  H RDA FC+NCG
Sbjct:  182 MTTVGFGDITPISETGRLLTVLMILTGIALIPWQVGDLIRQLVKTSTQIETV-----------------------CPQCGLDSHDRDANFCKNCG 253          
BLAST of Ggra7244.t1 vs. uniprot
Match: D8G7H9 (Ion transport protein n=1 Tax=Kamptonema sp. PCC 6506 TaxID=272129 RepID=D8G7H9_9CYAN)

HSP 1 Score: 63.9 bits (154), Expect = 3.910e-8
Identity = 36/100 (36.00%), Postives = 51/100 (51.00%), Query Frame = 0
Query:  210 LLTRGFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERYRKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFCRNCGCLLGK 309
            + T GFGDV+P++  GR +TVL +L G  LIP++L ++     IKQ                   +K+   +   C  C L  H +DARFC+NCG  L K
Sbjct:  182 MTTVGFGDVTPISETGRFLTVLMILNGIALIPWQLGDL-----IKQ------------------FVKTANQVETVCNGCGLSVHDKDARFCKNCGTKLDK 258          
BLAST of Ggra7244.t1 vs. uniprot
Match: A0A6P0QB23 (Potassium channel family protein (Fragment) n=1 Tax=Microcoleus sp. SIO2G3 TaxID=2607795 RepID=A0A6P0QB23_9CYAN)

HSP 1 Score: 60.1 bits (144), Expect = 5.510e-8
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 0
Query:  210 LLTRGFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERYRKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFCRNCGCLLGK 309
            + T GFGDV+P++  GR++TVL +LTG  LIP+++ ++     IK+                  ++K+   +   C  C L  H  DA FC+NCG  L K
Sbjct:   23 MTTVGFGDVTPVSEIGRLLTVLMILTGIALIPWQVGDL-----IKR------------------LVKTAHQVETVCSGCGLSFHDADAIFCKNCGTKLRK 99          
BLAST of Ggra7244.t1 vs. uniprot
Match: A0A1Q4R937 (Ion transporter n=1 Tax=Limnothrix rosea IAM M-220 TaxID=454133 RepID=A0A1Q4R937_9CYAN)

HSP 1 Score: 63.5 bits (153), Expect = 5.570e-8
Identity = 33/98 (33.67%), Postives = 51/98 (52.04%), Query Frame = 0
Query:  210 LLTRGFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERYRKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFCRNCGCLL 307
            + T GFGD +P++S G+I+T+L +LTG  +IP++L ++ R                         IKS      +C +C L  H +DA+FC+ CG LL
Sbjct:  186 MTTVGFGDKTPISSGGKIVTLLMILTGIAVIPWQLGDLVRQ-----------------------FIKSTTQKEVDCTKCGLAFHDQDAKFCKRCGTLL 260          
BLAST of Ggra7244.t1 vs. uniprot
Match: A0A563W3P4 (Ion transport protein n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563W3P4_9CYAN)

HSP 1 Score: 61.2 bits (147), Expect = 5.700e-8
Identity = 38/120 (31.67%), Postives = 64/120 (53.33%), Query Frame = 0
Query:  185 ENNVSMVFLMEFFGRWYGKGLSPRFLLTRGFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERYRKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFCRNCG 304
            E++V+   L  FF  +Y   ++   + T G+GDV+PL+  GR++T+  +LTG + IP++LSE                       + ++V K +  +  +C+QCNL  H  DA+FC+ CG
Sbjct:   46 EHHVNGDGLKNFFDAFYFVVVT---MTTVGYGDVTPLSQPGRVMTLFMILTGVLFIPWQLSEF----------------------VGQIV-KKVGLVEKKCEQCNLSRHDPDAQFCKQCG 139          
BLAST of Ggra7244.t1 vs. uniprot
Match: K9WCA8 (Ion channel n=1 Tax=Allocoleopsis franciscana PCC 7113 TaxID=1173027 RepID=K9WCA8_9CYAN)

HSP 1 Score: 62.4 bits (150), Expect = 1.380e-7
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 0
Query:  210 LLTRGFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERYRKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFCRNCGCLL 307
            + T GFGDV+PL+  GR++TVL +LTG  LIP++L ++     IKQ                  +IK+   +   C  C L  H +DARFC+ CG  L
Sbjct:  182 MTTVGFGDVTPLSEIGRLLTVLMILTGIALIPWQLGDL-----IKQ------------------LIKTANQIEMPCLSCGLPFHDKDARFCKICGTPL 256          
BLAST of Ggra7244.t1 vs. uniprot
Match: A0A7S0ZJN2 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJN2_9RHOD)

HSP 1 Score: 62.8 bits (151), Expect = 1.950e-7
Identity = 38/98 (38.78%), Postives = 51/98 (52.04%), Query Frame = 0
Query:  210 LLTRGFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERYRKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFCRNCGCLL 307
            L T GFGD++P+TS GR +T +++LTG  LIPY+L        +  S    +    S +S N+  I S       C  C L GH  DA +CR CG  L
Sbjct:  290 LTTLGFGDLAPVTSMGRFVTSVSILTGVFLIPYQLG------LLANSLLGEVDFK-SVISSNQPTISS----DVFCSNCKLTGHSSDAAYCRRCGFRL 376          
The following BLAST results are available for this feature:
BLAST of Ggra7244.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1103.550e-8345.91Hyperpolarization-activated voltage-gated potassiu... [more]
R7QSY64.500e-5639.55Ion_trans_2 domain-containing protein n=1 Tax=Chon... [more]
potassium channel family protein n=1 Tax=Leptolyngbya sp. FACHB-711 TaxID=2692813 RepID=UPI001688FE8A3.920e-1036.84potassium channel family protein n=1 Tax=Leptolyng... [more]
ion transporter n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI000B5988DF1.680e-834.74ion transporter n=1 Tax=Leptolyngbya ohadii TaxID=... [more]
D8G7H93.910e-836.00Ion transport protein n=1 Tax=Kamptonema sp. PCC 6... [more]
A0A6P0QB235.510e-834.00Potassium channel family protein (Fragment) n=1 Ta... [more]
A0A1Q4R9375.570e-833.67Ion transporter n=1 Tax=Limnothrix rosea IAM M-220... [more]
A0A563W3P45.700e-831.67Ion transport protein n=1 Tax=Hyella patelloides L... [more]
K9WCA81.380e-737.76Ion channel n=1 Tax=Allocoleopsis franciscana PCC ... [more]
A0A7S0ZJN21.950e-738.78Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 208..266
e-value: 2.1E-6
score: 29.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 79..102
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 59..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 202..220
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 183..201
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 172..182
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..10
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 221..242
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 243..313
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..58
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 103..152
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 153..171
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 211..260
NoneNo IPR availableTMHMMTMhelixcoord: 222..244
NoneNo IPR availableTMHMMTMhelixcoord: 154..171
IPR013099Potassium channel domainPFAMPF07885Ion_trans_2coord: 210..247
e-value: 8.0E-6
score: 25.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:416858..418387 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7244.t1Ggra7244.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 416858..418387 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7244.t1 ID=Ggra7244.t1|Name=Ggra7244.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MRRDAWSSLCSALHAQPYQLRSAPSVNSRLRQTSALPRSFLRAVFFFALY
VADGCASTPIRPPALLGDRIRSTTAERPLLFDQVMFAFTAGPLRPAAFLQ
VLPVNPPRIPLPPDQRQVFSAGETPAVRNSYPPGRLPMALELDFVLNHPA
TDGIIALLVVLNCLAFALQTLDVGPMWHQAFRSYENNVSMVFLMEFFGRW
YGKGLSPRFLLTRGFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERY
RKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFC
RNCGCLLGKRRFD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013099K_chnl_dom