Ggra7238.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7238.t1
Unique NameGgra7238.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length326
Homology
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BLAST of Ggra7238.t1 vs. uniprot
Match: A0A2V3J3T8 (E3 ubiquitin-protein ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3T8_9FLOR)

HSP 1 Score: 344 bits (882), Expect = 8.650e-115
Identity = 185/315 (58.73%), Postives = 227/315 (72.06%), Query Frame = 0 
Query:    1 MHCLKCGEEITEKVAVYTKSCHHTFCQKCSNDAFKKELSCPLCDTVLPKDGIGSIILVPDSNDIKKAGSRIYGFQPEQMCEVLKLGLQFWAKQNQSESLLHEREFSSTQRRMVELEEQNAKLTRALNEERLKKNSLQNEREALQKTVSDLEARYAQKARSMRKLTELYNELRQVHRRLEVDLRGIRDSNEFEVDAVPGSEFEVNTHGVSGNMSGRDGNESYRMNDEQVERSVRGSQTAREHRRTSRDYNDRD-HGNRDEGSTSAARRIPTPGDPLFNFATNRSPTANIRINVPAKNTGGHGARRRRYHVDPRPDI 314
            MHCLKC E I++K AVYTKSC H FC++CS+ AFKKELSCPLCDTVLPKDGIG++ L+PD+N+I KAGS+ +GF+PEQMCEVLKLGL FW KQ ++ESLLH RE    Q+RM ELEEQNA+L+RALNEERL+K SLQNE++ LQKT+SDLEARYAQKARSMRKL+ELYNELRQVHRRLE DLRG+R+ N+FE +  PGSEFE+NTHG SGN   RDG  S+   +    R  R     R   R   +Y++   H  + + +T+           LFN A N +     R+   ++N    G RRRRY  +P PDI
Sbjct:    1 MHCLKCWEVISDKTAVYTKSCKHVFCKRCSSTAFKKELSCPLCDTVLPKDGIGAVTLLPDANEIGKAGSKTFGFEPEQMCEVLKLGLDFWVKQKENESLLHARELKGVQKRMAELEEQNARLSRALNEERLRKTSLQNEKDGLQKTISDLEARYAQKARSMRKLSELYNELRQVHRRLEADLRGVREPNDFEAEPFPGSEFEINTHGRSGNAGIRDGPGSHNEREYGSRRGNREGAFIRGQDRAPENYDETPLHEVKSKANTTPQELERR--QMLFNLAPNLASNPRQRMRASSRNVIPQGIRRRRYSPEPAPDI 313
The following BLAST results are available for this feature:
BLAST of Ggra7238.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J3T88.650e-11558.73E3 ubiquitin-protein ligase n=1 Tax=Gracilariopsis... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 105..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 275..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..260
NoneNo IPR availableCDDcd16449RING-HCcoord: 3..43
e-value: 2.22E-6
score: 42.0693
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..51
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 1..70
e-value: 1.4E-8
score: 36.5
IPR001841Zinc finger, RING-typePFAMPF14634zf-RING_5coord: 2..44
e-value: 1.7E-7
score: 31.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 3..44
score: 10.718918
IPR042448E3 ubiquitin-protein ligase CCNB1IP1PANTHERPTHR14305E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1coord: 2..287

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:365730..366942 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7238.t1Ggra7238.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 365730..366942 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7238.t1 ID=Ggra7238.t1|Name=Ggra7238.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=326bp
MHCLKCGEEITEKVAVYTKSCHHTFCQKCSNDAFKKELSCPLCDTVLPKD
GIGSIILVPDSNDIKKAGSRIYGFQPEQMCEVLKLGLQFWAKQNQSESLL
HEREFSSTQRRMVELEEQNAKLTRALNEERLKKNSLQNEREALQKTVSDL
EARYAQKARSMRKLTELYNELRQVHRRLEVDLRGIRDSNEFEVDAVPGSE
FEVNTHGVSGNMSGRDGNESYRMNDEQVERSVRGSQTAREHRRTSRDYND
RDHGNRDEGSTSAARRIPTPGDPLFNFATNRSPTANIRINVPAKNTGGHG
ARRRRYHVDPRPDIEDENSHRDRRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
IPR042448CCNB1IP1