Ggra7220.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7220.t1
Unique NameGgra7220.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Homology
BLAST of Ggra7220.t1 vs. uniprot
Match: A0A2V3IHM2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHM2_9FLOR)

HSP 1 Score: 393 bits (1010), Expect = 1.750e-135
Identity = 210/288 (72.92%), Postives = 242/288 (84.03%), Query Frame = 0
Query:    1 MFRRRKNLGTVTVFEDDERIPQDNFDDLGLDDMKHKNSTTEDLNQMNASQLEELALSTAQTGREGTQRALRLAAEAREIGVTTADTMHKQTAQLEKMSEDIEVVHDYLDKSERIIDKMTKPKLARLFQRRKPVGKGLNKVKATKKERASRDQLREQGLDAVDLDEMTDSQKALTLDQFEKDRNELFDGETVQDYRRGRXXXXXXXXXXXXXXXXQDYSQYSGAVASVMRQQDDDLDQISDALTDMHALASAMNNELEYQDKLINEVQDFTTETSRRTKENAKKIHRIK 288
            MFRR+K+LGTVTVFE+DE +P DNFDDLGL+D+KHK+ST +DLNQM A+QLE LAL TAQTGREGTQRALR+A EAREIGV+TA+TM  QTAQLEKMSEDIEVVHDYLDKSER+IDKMTKPKL R+FQR+K  GKGL+KVK +KKER  R+QLR++GLDAV LD+M+DSQK LTLD  +  R++LFDGETV DY+R R                +DYSQY+  VASVMRQQDDDLDQISDAL DM ALASAMNNEL+YQDKLI EVQDFT ET+RRTK+NA+KI RIK
Sbjct:    1 MFRRKKHLGTVTVFEEDEPVPADNFDDLGLNDIKHKDSTNQDLNQMTAAQLESLALGTAQTGREGTQRALRMALEAREIGVSTAETMKSQTAQLEKMSEDIEVVHDYLDKSERLIDKMTKPKLVRMFQRKKGNGKGLDKVKISKKEREDREQLRDKGLDAVQLDDMSDSQKTLTLDDIDDQRDQLFDGETVTDYKRSRRGKKKEPQIKETRQIREDYSQYAAPVASVMRQQDDDLDQISDALVDMKALASAMNNELDYQDKLITEVQDFTQETARRTKDNAQKIKRIK 288          
BLAST of Ggra7220.t1 vs. uniprot
Match: A0A1X6NVY1 (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVY1_PORUM)

HSP 1 Score: 177 bits (450), Expect = 1.680e-50
Identity = 124/279 (44.44%), Postives = 166/279 (59.50%), Query Frame = 0
Query:   23 DNFDDLGLDDMKH----------KNSTTEDLNQMNASQLEELALSTAQTGREGTQRALRLAAEAREIGVTTADTMHKQTAQLEKMSEDIEVVHDYLDKSERIIDKMTKPKLARLFQRRKPVGKGLNKVKAT-KKERASRDQLREQGLDAVDLDEMTDSQKALT------LDQFEKDRNELFDGETVQDYRRGRXXXXXXXXXXXXXXXXQDYSQYSGAVASVMRQQDDDLDQISDALTDMHALASAMNNELEYQDKLINEVQDFTTETSRRTKENAKKI 284
            D+FDDL LDD             +  T  +++QM+        L+ A  G EGT+R+L LA EAR IGVTTA T+  QT QLE M+ DIE VHD LDKSE++IDKMTKP   R+F R K  GKGL+K K   +KE   R  +RE G+D++DLD + +   A         D+ + DR EL D + V   ++G+                ++Y+ YS  VA+ +R+QD+DLD IS AL DM  LASAMN+EL YQ+ L++ V ++T ETSRRTK NA K+
Sbjct:   30 DSFDDL-LDDAPAAGRGRAAAATREPTAAEMDQMSXXXXXXXXLAQAAAGNEGTKRSLALALEARTIGVTTAATLKDQTKQLEGMTADIERVHDCLDKSEKVIDKMTKPVYVRMFTRSKRAGKGLDKQKKLGRKEAKERAAMREGGVDSLDLDGLRERDAAARGEGGRGPDEEDDDRAELLDEQLVAS-KKGKAARAVGGAAGVGGK--EEYAGYSTGVATALRKQDEDLDAISGALADMKGLASAMNSELTYQEGLVSTVNEYTLETSRRTKANAAKV 304          
BLAST of Ggra7220.t1 vs. uniprot
Match: A0A5J4Z0K1 (Synaptosomal-associated protein 25-B n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0K1_PORPP)

HSP 1 Score: 67.0 bits (162), Expect = 3.830e-9
Identity = 71/265 (26.79%), Postives = 118/265 (44.53%), Query Frame = 0
Query:   34 KHKNSTTEDLNQMNASQLEELALSTAQTGREGTQRALRLAAEAREIGVTTADTMHKQTAQLEKMSEDIEVVHDYLDKSERIIDKMTKPKLARLFQRRKPVGKGLNKVKATKKERASRDQLREQGLD---AVDLDEMTD--------SQKALTLDQFEKDRNELFDGETVQDYRRGRXXXXXXXXXXXXXXXXQDYSQYSGAVASVMRQQDDDLDQISDALTDMHALASAMNNELEYQDKLINEVQDFTTETSRRTKENAKKIHRI 287
            K +    ++L+ M+A      AL  A+     T+R   L  E RE+G  TA  +++Q+ QLE++ +D+   +  +D++++II K+  P   +L    +P  +           R   DQL+  G++    +DLDE T         S +     + +KD   L      Q+ R                      ++    +  + ++QDDDL+ I   + D+  LA AMN EL YQ ++I  V      TSRR KEN +K+  I
Sbjct:   62 KSRQEYVQELDAMDAE-----ALRLAEDSALSTKRTRALVHETREVGTATATALNQQSEQLERIQDDLVETNATIDRTDKIIQKLASPWTYKL----QPGAR-----------RKKEDQLKSSGMNRGRVIDLDESTGLEIVSESVSPRGSGGGKKKKDAKVL-----EQEEREALLSPRTRAKQEKIRKDTAHMTETERRLYILEQEQDDDLNDIGKVVGDLKGLALAMNTELNYQTEMIVAVTHDAGVTSRRLKENNRKVKNI 301          
BLAST of Ggra7220.t1 vs. uniprot
Match: M2XD98 (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XD98_GALSU)

HSP 1 Score: 58.2 bits (139), Expect = 4.370e-6
Identity = 78/323 (24.15%), Postives = 130/323 (40.25%), Query Frame = 0
Query:    4 RRKNLGTVTVFEDDERIPQDNFDDLGLDDMKHKNSTTEDLNQMNASQLEELALSTAQTGREGTQRALRLAAEAREIGVTTADTMHKQTAQLEKMSEDIEVVHDYLDKSERIIDKMTKPKLARLFQRRKPVGKGLNKVKATKKERASRDQLREQGLDAVDLDE-MTD--SQKALTLDQ--------FEKDRNELFDG---------------------ETVQDYRRGRXXXXXXXXXXXXXXXXQ-------DYSQYSGAVASVMRQQDDDLDQISDALTDMHALASAMNNELEYQDKLINEVQDFTTETSRRTKENAKKIHRI 287
            R+++   V ++     +P+D+              +TED    N  Q E  A   A+ G E  +RA ++A EAR IG+ TA+ + KQT QLE + +D+E +H  L  +E II ++    L      RKPV          +       +    GLD   +    TD  S +A+  +Q          ++   +F                        +VQ   R                  Q        +   + +V   +R+QD++LD+I  AL DM  +A  MN EL YQ+++I+ +Q    +   R   + +++ RI
Sbjct:   19 RKRDENKVEIWNSHMDVPEDSC------------VSTEDNFASNCWQTE--ASQIAKQGTESAKRARKIAEEARSIGIFTAEELGKQTEQLETVQDDVEAIHSNLGDAEYIIHEIEDGFLGEFLPFRKPVKSYKRTATRVESRTIEETKKGISGLDIDGMKTGKTDKNSTRAVVKNQEXXXXXXXXXEEGESIFKNPLKYLWTWWNRTDSNIAGDEISSVQSSERRTQLEERPQQFTIDKKHSQTCLTENTSHESLAPSVDKHIRKQDEELDKIGLALKDMKEIALRMNEELSYQEQIIDNLQVNMEDADYRLHSDLRRVKRI 327          
The following BLAST results are available for this feature:
BLAST of Ggra7220.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IHM21.750e-13572.92Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6NVY11.680e-5044.44t-SNARE coiled-coil homology domain-containing pro... [more]
A0A5J4Z0K13.830e-926.79Synaptosomal-associated protein 25-B n=1 Tax=Porph... [more]
M2XD984.370e-624.15Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.5.110coord: 59..119
e-value: 2.4E-10
score: 42.3
NoneNo IPR availableGENE3D1.20.5.110coord: 225..288
e-value: 2.0E-12
score: 48.9
NoneNo IPR availablePANTHERPTHR19305SYNAPTOSOMAL ASSOCIATED PROTEINcoord: 43..287
NoneNo IPR availableCDDcd15841SNARE_Qccoord: 228..286
e-value: 4.15736E-9
score: 49.8644
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 46..119
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 226..286
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 225..287
score: 13.840807
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 56..118
score: 8.551045

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:236499..237462 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7220.t1Ggra7220.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 236499..237462 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7220.t1 ID=Ggra7220.t1|Name=Ggra7220.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MFRRRKNLGTVTVFEDDERIPQDNFDDLGLDDMKHKNSTTEDLNQMNASQ
LEELALSTAQTGREGTQRALRLAAEAREIGVTTADTMHKQTAQLEKMSED
IEVVHDYLDKSERIIDKMTKPKLARLFQRRKPVGKGLNKVKATKKERASR
DQLREQGLDAVDLDEMTDSQKALTLDQFEKDRNELFDGETVQDYRRGRRG
KKKEQEVKQTRQITQDYSQYSGAVASVMRQQDDDLDQISDALTDMHALAS
AMNNELEYQDKLINEVQDFTTETSRRTKENAKKIHRIK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom