Ggra7220.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7220.t1
Unique NameGgra7220.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:236499..237462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7220Ggra7220Gracilaria gracilis GNS1m malegenetig00000871_pilon 236499..237462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7220.t1Ggra7220.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 236499..237462 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7220.t1.start1Ggra7220.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 236499..236501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7220.t1.CDS1Ggra7220.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 236499..236835 +
Ggra7220.t1.CDS2Ggra7220.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 236933..237462 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7220.t1.exon1Ggra7220.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 236499..236835 +
Ggra7220.t1.exon2Ggra7220.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 236933..237462 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7220.t1.intron1Ggra7220.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 236836..236932 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7220.t1.stop1Ggra7220.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 237460..237462 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7220.t1 ID=Ggra7220.t1|Name=Ggra7220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MFRRRKNLGTVTVFEDDERIPQDNFDDLGLDDMKHKNSTTEDLNQMNASQ
LEELALSTAQTGREGTQRALRLAAEAREIGVTTADTMHKQTAQLEKMSED
IEVVHDYLDKSERIIDKMTKPKLARLFQRRKPVGKGLNKVKATKKERASR
DQLREQGLDAVDLDEMTDSQKALTLDQFEKDRNELFDGETVQDYRRGRRG
KKKEQEVKQTRQITQDYSQYSGAVASVMRQQDDDLDQISDALTDMHALAS
AMNNELEYQDKLINEVQDFTTETSRRTKENAKKIHRIK*
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spliced messenger RNA

>Ggra7220.t1 ID=Ggra7220.t1|Name=Ggra7220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000871_pilon:236499..237462+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGACGAAGGAAAAACCTGGGTACCGTGACGGTGTTTGAAGATGA
CGAACGTATCCCGCAAGACAATTTTGATGACCTTGGTCTCGATGACATGA
AGCACAAAAACTCTACTACCGAAGACCTAAACCAGATGAATGCTTCTCAG
CTTGAAGAGCTTGCCCTCAGCACGGCTCAGACAGGCCGAGAAGGTACACA
GCGCGCACTTCGATTAGCGGCCGAAGCTCGTGAAATTGGCGTAACGACTG
CGGATACCATGCACAAGCAGACTGCGCAACTCGAAAAGATGTCAGAAGAT
ATTGAAGTCGTACATGACTATCTAGACAAGTCTGAACGTATTATCGACAA
GATGACAAAGCCAAAACTTGCCCGTTTGTTTCAACGTAGAAAGCCTGTTG
GAAAAGGACTTAATAAGGTGAAAGCCACGAAGAAAGAGCGTGCCAGTCGA
GACCAGCTACGCGAACAAGGCTTGGACGCGGTTGACCTTGACGAGATGAC
TGACTCGCAGAAAGCCCTTACTCTGGATCAATTTGAAAAGGACCGCAATG
AACTCTTCGATGGAGAGACTGTCCAGGACTATCGTCGTGGACGTCGAGGA
AAGAAGAAGGAACAAGAGGTGAAACAAACCAGACAGATTACTCAAGATTA
TTCACAGTACTCTGGTGCAGTTGCGTCTGTCATGAGACAGCAAGATGATG
ACCTTGACCAAATCAGTGATGCATTGACGGACATGCATGCTTTGGCTTCG
GCCATGAATAATGAACTTGAGTATCAGGATAAACTTATCAATGAGGTTCA
GGACTTCACCACGGAGACTTCCAGGAGAACTAAGGAGAATGCAAAGAAGA
TCCATCGCATCAAGTAG
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protein sequence of Ggra7220.t1

>Ggra7220.t1 ID=Ggra7220.t1|Name=Ggra7220.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MFRRRKNLGTVTVFEDDERIPQDNFDDLGLDDMKHKNSTTEDLNQMNASQ
LEELALSTAQTGREGTQRALRLAAEAREIGVTTADTMHKQTAQLEKMSED
IEVVHDYLDKSERIIDKMTKPKLARLFQRRKPVGKGLNKVKATKKERASR
DQLREQGLDAVDLDEMTDSQKALTLDQFEKDRNELFDGETVQDYRRGRRG
KKKEQEVKQTRQITQDYSQYSGAVASVMRQQDDDLDQISDALTDMHALAS
AMNNELEYQDKLINEVQDFTTETSRRTKENAKKIHRIK*
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mRNA from alignment at tig00000871_pilon:236499..237462+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7220.t1 ID=Ggra7220.t1|Name=Ggra7220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=964bp|location=Sequence derived from alignment at tig00000871_pilon:236499..237462+ (Gracilaria gracilis GNS1m male)
ATGTTCCGACGAAGGAAAAACCTGGGTACCGTGACGGTGTTTGAAGATGA
CGAACGTATCCCGCAAGACAATTTTGATGACCTTGGTCTCGATGACATGA
AGCACAAAAACTCTACTACCGAAGACCTAAACCAGATGAATGCTTCTCAG
CTTGAAGAGCTTGCCCTCAGCACGGCTCAGACAGGCCGAGAAGGTACACA
GCGCGCACTTCGATTAGCGGCCGAAGCTCGTGAAATTGGCGTAACGACTG
CGGATACCATGCACAAGCAGACTGCGCAACTCGAAAAGATGTCAGAAGAT
ATTGAAGTCGTACATGACTATCTAGACAAGTCTGAACGTATGTTTTTTAA
TCCATGTCATTGAGTTTACCATTCCAAATCTTGCTCTAACTTGGTTCTGA
TACCAATGGCGTGCTTTTTTTCTTTTGTTTGTAGGTATTATCGACAAGAT
GACAAAGCCAAAACTTGCCCGTTTGTTTCAACGTAGAAAGCCTGTTGGAA
AAGGACTTAATAAGGTGAAAGCCACGAAGAAAGAGCGTGCCAGTCGAGAC
CAGCTACGCGAACAAGGCTTGGACGCGGTTGACCTTGACGAGATGACTGA
CTCGCAGAAAGCCCTTACTCTGGATCAATTTGAAAAGGACCGCAATGAAC
TCTTCGATGGAGAGACTGTCCAGGACTATCGTCGTGGACGTCGAGGAAAG
AAGAAGGAACAAGAGGTGAAACAAACCAGACAGATTACTCAAGATTATTC
ACAGTACTCTGGTGCAGTTGCGTCTGTCATGAGACAGCAAGATGATGACC
TTGACCAAATCAGTGATGCATTGACGGACATGCATGCTTTGGCTTCGGCC
ATGAATAATGAACTTGAGTATCAGGATAAACTTATCAATGAGGTTCAGGA
CTTCACCACGGAGACTTCCAGGAGAACTAAGGAGAATGCAAAGAAGATCC
ATCGCATCAAGTAG
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Coding sequence (CDS) from alignment at tig00000871_pilon:236499..237462+

>Ggra7220.t1 ID=Ggra7220.t1|Name=Ggra7220.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000871_pilon:236499..237462+ (Gracilaria gracilis GNS1m male)
ATGTTCCGACGAAGGAAAAACCTGGGTACCGTGACGGTGTTTGAAGATGA
CGAACGTATCCCGCAAGACAATTTTGATGACCTTGGTCTCGATGACATGA
AGCACAAAAACTCTACTACCGAAGACCTAAACCAGATGAATGCTTCTCAG
CTTGAAGAGCTTGCCCTCAGCACGGCTCAGACAGGCCGAGAAGGTACACA
GCGCGCACTTCGATTAGCGGCCGAAGCTCGTGAAATTGGCGTAACGACTG
CGGATACCATGCACAAGCAGACTGCGCAACTCGAAAAGATGTCAGAAGAT
ATTGAAGTCGTACATGACTATCTAGACAAGTCTGAACGTATTATCGACAA
GATGACAAAGCCAAAACTTGCCCGTTTGTTTCAACGTAGAAAGCCTGTTG
GAAAAGGACTTAATAAGGTGAAAGCCACGAAGAAAGAGCGTGCCAGTCGA
GACCAGCTACGCGAACAAGGCTTGGACGCGGTTGACCTTGACGAGATGAC
TGACTCGCAGAAAGCCCTTACTCTGGATCAATTTGAAAAGGACCGCAATG
AACTCTTCGATGGAGAGACTGTCCAGGACTATCGTCGTGGACGTCGAGGA
AAGAAGAAGGAACAAGAGGTGAAACAAACCAGACAGATTACTCAAGATTA
TTCACAGTACTCTGGTGCAGTTGCGTCTGTCATGAGACAGCAAGATGATG
ACCTTGACCAAATCAGTGATGCATTGACGGACATGCATGCTTTGGCTTCG
GCCATGAATAATGAACTTGAGTATCAGGATAAACTTATCAATGAGGTTCA
GGACTTCACCACGGAGACTTCCAGGAGAACTAAGGAGAATGCAAAGAAGA
TCCATCGCATCAAGTAG
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