Ggra7066.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7066.t1
Unique NameGgra7066.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length340
Homology
BLAST of Ggra7066.t1 vs. uniprot
Match: A0A2V3J250 (Putative RNA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J250_9FLOR)

HSP 1 Score: 400 bits (1028), Expect = 1.390e-138
Identity = 195/219 (89.04%), Postives = 205/219 (93.61%), Query Frame = 0
Query:  121 MEDVHMDSFHDEQQASTPPQSNGAAPSAPTGGRRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEFETPEFAQNAISTLNDSMLDGRSIFVRADREEGKPRRFDAEHGGXXXXXXXYRGRRESDRGRKIVVWNLPYHIRWQDLKDLFRDYGNVIRADIPQTHDGKSKGMGTVLFETEMEADRAIREMTGKEVDGRVVDCRLDKFA 339
            MEDVHMDSFH+E Q+STPPQSNGAAP+APTGGRRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEFETPE AQNAI++LND+MLD R+IFVRADREEGKPRR + +HG        YR RRESDRGRKIVVWNLPYHIRWQDLKDLFRDYGNVIRADIPQTHDGKSKGMGTVLFETEMEA+RAIREMTGKEVDGRVVDCRLDKFA
Sbjct:    1 MEDVHMDSFHEEPQSSTPPQSNGAAPAAPTGGRRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEFETPEGAQNAINSLNDTMLDSRTIFVRADREEGKPRRLEGDHG--------YR-RRESDRGRKIVVWNLPYHIRWQDLKDLFRDYGNVIRADIPQTHDGKSKGMGTVLFETEMEAERAIREMTGKEVDGRVVDCRLDKFA 210          
BLAST of Ggra7066.t1 vs. uniprot
Match: R7QID6 (RNP domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QID6_CHOCR)

HSP 1 Score: 352 bits (903), Expect = 1.470e-119
Identity = 171/219 (78.08%), Postives = 192/219 (87.67%), Query Frame = 0
Query:  121 MEDVHMDSFHDEQQASTPPQSNGAAPSAPTGGRRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEFETPEFAQNAISTLNDSMLDGRSIFVRADREEGKPRRFDAEHGGXXXXXXXYRGRRESDRGRKIVVWNLPYHIRWQDLKDLFRDYGNVIRADIPQTHDGKSKGMGTVLFETEMEADRAIREMTGKEVDGRVVDCRLDKFA 339
            ME+  +++FH+E  A+ P Q+ G AP   TGG+RVYVGNLSWDTRWQGLKDHMREAG+V HAEVFTESSGRSAGCGIVEFETPE A+NAI+TLND+MLDGRSIFVRADREEGKPRR   +  G       +  RRESDRGRKIVVWNLPYHIRWQDLKDLFR+YG+VIRAD+PQTHDGKSKGMGTVLFETEMEA+RAI+EMTGKEVDGR+VDCRLDK+A
Sbjct:    1 MEEAPIEAFHEEAPAAGP-QTTGPAPGGHTGGKRVYVGNLSWDTRWQGLKDHMREAGNVAHAEVFTESSGRSAGCGIVEFETPEAAENAINTLNDTMLDGRSIFVRADREEGKPRRAFGDGEG-------FSRRRESDRGRKIVVWNLPYHIRWQDLKDLFREYGSVIRADVPQTHDGKSKGMGTVLFETEMEAERAIQEMTGKEVDGRIVDCRLDKYA 211          
BLAST of Ggra7066.t1 vs. uniprot
Match: Q7XZ56 (Gbp1 n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XZ56_GRIJA)

HSP 1 Score: 235 bits (599), Expect = 2.850e-74
Identity = 119/156 (76.28%), Postives = 127/156 (81.41%), Query Frame = 0
Query:  132 EQQASTPPQSNGAAPSAP--TGGRRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEFETPEFAQNAISTLNDSMLDGRSIFVRADREEGKPRRFDAEHGGXXXXXXXYRGRRESDRGRKIVVWNLPYHIRWQDLKDLFRDYG 285
            +Q    PPQSNGAAP     +GG+RVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTE+SGRSAGCGIVEFE  E A+ AISTLND+MLDGR+IFVRADREEGKP R     G        +RGR  SDRGRKIVVWNLPYHIRWQDLKDLFRDYG
Sbjct:    2 DQDQPPPPQSNGAAPQTGGHSGGKRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTEASGRSAGCGIVEFENSEGAETAISTLNDTMLDGRTIFVRADREEGKPSR-----GRYGDGDGSFRGR-PSDRGRKIVVWNLPYHIRWQDLKDLFRDYG 151          
BLAST of Ggra7066.t1 vs. uniprot
Match: A0A7S1XIZ8 (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XIZ8_9RHOD)

HSP 1 Score: 223 bits (567), Expect = 9.840e-69
Identity = 114/197 (57.87%), Postives = 140/197 (71.07%), Query Frame = 0
Query:  154 RVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEFETPEFAQNAISTLNDSMLDGRSIFVRADREEGKPRRFDAEHGGXXXXXXX-----------YRGRRESDRGRKIVVWNLPYHIRWQDLKDLFRDY-GNVIRADIPQTHDGKSKGMGTVLFETEMEADRAIREMTGKEVDGRVVDCRLDKF 338
            RV+VGNLSW+TRWQ LKDHMR AG+VVHAEVFTE++GRSAGCG+VE+ETP+ A +AI+TLNDS+LDGR +FVR DRE G      A  GG                      R ++RGRK+VV NLPY  RWQDLKD+FR   G V+RAD+  T DG+SKG+G VLF++E  A  AI EM G EVDGR+V+ RLD++
Sbjct:   12 RVFVGNLSWETRWQTLKDHMRAAGNVVHAEVFTEATGRSAGCGVVEYETPQEAAHAIATLNDSVLDGRPMFVRYDREVGGG---SAREGGLGMHVGVGXXXXXXXXXXXGSSRANERGRKVVVLNLPYSCRWQDLKDIFRTCSGTVVRADVLSTPDGRSKGVGVVLFDSEAGAQAAIEEMNGVEVDGRIVEVRLDRY 205          
BLAST of Ggra7066.t1 vs. uniprot
Match: A0A5J4YLM3 (Putative RNA-binding protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLM3_PORPP)

HSP 1 Score: 216 bits (551), Expect = 1.720e-66
Identity = 113/185 (61.08%), Postives = 133/185 (71.89%), Query Frame = 0
Query:  154 RVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEFETPEFAQNAISTLNDSMLDGRSIFVRADREEGKPRRFDAEHGGXXXXXXXYRGRRESDRGRKIVVWNLPYHIRWQDLKDLFRDYG-NVIRADIPQTHDGKSKGMGTVLFETEMEADRAIREMTGKEVDGRVVDCRLDK 337
            RV+VGNLSW+TRWQGLKDHMR AG+V HAEVF ++SGRSAGCG+VE+ETPE A  AI TL DS LDGR+IF            F A  GG        R R E ++GRK+VV NLP+  RWQ LKD+FR  G NVIRADI    DG+SKG+GTVLFETE EA RAI EM G EVDGR+++ R+D+
Sbjct:   15 RVFVGNLSWETRWQGLKDHMRAAGNVSHAEVFIDASGRSAGCGVVEYETPEEADAAIHTLTDSQLDGRAIF------------FGAPGGGGGGFN---RDRFEQEKGRKVVVLNLPFTCRWQHLKDIFRTSGGNVIRADIIMGQDGRSKGIGTVLFETEEEAQRAIDEMNGAEVDGRLIEVRMDR 184          
BLAST of Ggra7066.t1 vs. uniprot
Match: A0A7J7IJR9 (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJR9_9RHOD)

HSP 1 Score: 219 bits (557), Expect = 4.610e-66
Identity = 117/233 (50.21%), Postives = 143/233 (61.37%), Query Frame = 0
Query:  118 ATAMEDVHMDSFHDEQQASTPPQSNGAAPSAPTGGRRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEFETPEFAQNAISTLNDSMLDGRSIFVRADREEGKP---RRFDAEHGGXXXXXXXYRGRR--------ESDRGRKIVVWNLPYHIRWQDLKDLFRDYGNVIRADIPQTHDGKSKGMGTVLFETEMEADRAIREMTGKEVDGRVVDCRLDKFA 339
            AT    V           + P    GA PS     RRVYVGNL+W   WQ LKDHMR+AG+VV AEVFTE  GRS GCG+VE+     + NAI+TLND+ L GR IFVR DRE  +P    R  A HGG       ++  R         SD+GRKI++WNLPY   WQDLKD FR  G++IRADI    +G+S+G GT++FETE +A RAI+ M   E+ GRVVD RLDK+A
Sbjct:   63 ATVQRAVRASKLDPNAPPAGPGAEGGALPS-----RRVYVGNLAWSVTWQALKDHMRKAGEVVFAEVFTERDGRSRGCGVVEYAAEADSANAIATLNDTELQGRLIFVREDREPNQPLRRNRAPAFHGGGATPAARHQDPRGRVPPPSFPSDKGRKIIIWNLPYSYTWQDLKDEFRSCGSIIRADILMDQEGRSRGAGTIVFETEEDAQRAIQMMDRAELAGRVVDVRLDKYA 290          
BLAST of Ggra7066.t1 vs. uniprot
Match: M1VIK6 (Similar to Gbp1p protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1VIK6_CYAM1)

HSP 1 Score: 216 bits (549), Expect = 8.020e-65
Identity = 115/215 (53.49%), Postives = 141/215 (65.58%), Query Frame = 0
Query:  138 PPQSNGAAPSAPTGGRRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEFETPEFAQNAISTLNDSMLDGRSIFVRADREEGKPRRFDAE-----HGGXXXXXXXY---RGRRE-----SDRGRKIVVWNLPYHIRWQDLKDLFRDYGNVIRADIPQTHDGKSKGMGTVLFETEMEADRAIREMTGKEVDGRVVDCRLDKFA 339
            P    GA PS     RRVYVGNL+W   WQ LKDHMR+AG+VV AEVFTE  GRS GCG+VE+ T   + NAI+TLND+ L GR IFVR DRE  +P R +       HG        +   RGR +     SD+GRKI+VWNLPY   WQDLKD FR  GN+IRADI    +G+S+G GT++FE+E +A RAI+ M   E+ GR+VD RLDK+A
Sbjct:   84 PGSEGGALPS-----RRVYVGNLAWSVSWQALKDHMRKAGEVVFAEVFTERDGRSRGCGVVEYATEADSANAIATLNDTELQGRLIFVREDREPNQPLRRNKTSASGFHGANATTGNRHHEARGRNQPPSFPSDKGRKIIVWNLPYSYTWQDLKDEFRACGNIIRADILIDQEGRSRGAGTIVFESEEDAQRAIQMMDRAELAGRIVDVRLDKYA 293          
BLAST of Ggra7066.t1 vs. uniprot
Match: A0A1X6NMV2 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NMV2_PORUM)

HSP 1 Score: 197 bits (500), Expect = 6.770e-59
Identity = 111/186 (59.68%), Postives = 127/186 (68.28%), Query Frame = 0
Query:  173 MREAGDVVHAEVFTESSGRSAGCGIVEFETPEFAQNAISTLNDSMLDGRSIFVRADREEGKPRRFDAEHGGXXXXXXXYRG-------------------RRESDRGRKIVVWNLPYHIRWQDLKDLFRDYGNVIRADIPQTHDGKSKGMGTVLFETEMEADRAIREMTGKEVDGRVVDCRLDKFA 339
            M  AG+VV AEVFTE+SGRSAGCGIVE+ T E A  AI TLND++LDGR +FVR DRE    R        XXXXXXX                      R  SDRGRKIVVWNLPY +RWQ+LKD FR  G VIRADI    DGKSKG+GTVL+ETE EA RAI +MTG+E++GRV+DCRLD+FA
Sbjct:    1 MERAGEVVRAEVFTEASGRSAGCGIVEYTTAEMAAMAIQTLNDTVLDGRQVFVREDRETSTRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFRSDRGRKIVVWNLPYSLRWQELKDAFRQCGTVIRADILTQPDGKSKGVGTVLYETEEEAQRAINDMTGREIEGRVIDCRLDRFA 186          
BLAST of Ggra7066.t1 vs. uniprot
Match: A0A7S0BFC3 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BFC3_9RHOD)

HSP 1 Score: 195 bits (496), Expect = 2.320e-57
Identity = 111/252 (44.05%), Postives = 143/252 (56.75%), Query Frame = 0
Query:  153 RRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEFETPEFAQNAISTLNDSMLDGRSIFVRADREEGK-----------------------PRRFDAEH-------------------------GGXXXXXXXYR------------------GRRESDRGRKIVVWNLPYHIRWQDLKDLFRDYGNVIRADIPQTHDGKSKGMGTVLFETEMEADRAIREMTGKEVDGRVVDCRLDKF 338
            R V+VGNLSWDTRWQGLKDHMR+AG+VVHAEVF+E+SGRSAGCGIVE+E+ + A +AI+T+N+SMLDGR +FVR DR+                             F +++                         GG    XXX                    G    DRGRK+VV NLPY IRWQ+LKD+FR  GNVIRAD+    DG+SKG+GT++FE E  A+ AI  +   E+DGR++  R D++
Sbjct:    5 RTVFVGNLSWDTRWQGLKDHMRQAGNVVHAEVFSEASGRSAGCGIVEYESTDEAMHAINTMNNSMLDGRQVFVREDRDNRSGXXXXXXXXXXXXXFFNRXXXXXXXXFGSDYXXXXXXXXXXXXXXXXXXXXXRDARGGFDDYXXXXXXXXXXXXXXXXXXXXXXXGGFRDDRGRKVVVTNLPYQIRWQELKDIFRSCGNVIRADVLTNPDGRSKGIGTIVFEDEAGANDAISRLNEAELDGRIIRVRFDRY 256          
BLAST of Ggra7066.t1 vs. uniprot
Match: M2Y164 (Poly(A) binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y164_GALSU)

HSP 1 Score: 195 bits (496), Expect = 8.720e-57
Identity = 102/186 (54.84%), Postives = 125/186 (67.20%), Query Frame = 0
Query:  153 RRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEFETPEFAQNAISTLNDSMLDGRSIFVRADREEGKPRRFDAEHGGXXXXXXXYRGRRESDRGRKIVVWNLPYHIRWQDLKDLFRDYGNVIRADIPQTHDGKSKGMGTVLFETEMEADRAIREMTGKEVDGRVVDCRLDKF 338
            RRV+VGNLS+ T WQ LKDHMR+AG V+ AEVF +S GRSAGCG+VEFET E AQ AI+ LNDS+LDGR IFVR DRE    R     H             ++S+R RKIV+ NLP   +WQDLKD F  YG +IRAD+ +THD +   MGT+LF  E EA+ AI  M GKE  G ++  R+D+F
Sbjct:  130 RRVFVGNLSYRTPWQILKDHMRQAGSVIRAEVFLDSLGRSAGCGVVEFETEELAQMAIAKLNDSILDGRPIFVREDRENSSLR-----HNTPF---------QKSER-RKIVLRNLPMSAKWQDLKDYFSKYGTIIRADVKKTHDERVTKMGTILFSKETEAEAAIAAMNGKEFQGHILHIRMDRF 300          
The following BLAST results are available for this feature:
BLAST of Ggra7066.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2501.390e-13889.04Putative RNA-binding protein n=1 Tax=Gracilariopsi... [more]
R7QID61.470e-11978.08RNP domain-containing protein n=1 Tax=Chondrus cri... [more]
Q7XZ562.850e-7476.28Gbp1 n=1 Tax=Griffithsia japonica TaxID=83288 RepI... [more]
A0A7S1XIZ89.840e-6957.87Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A5J4YLM31.720e-6661.08Putative RNA-binding protein n=1 Tax=Porphyridium ... [more]
A0A7J7IJR94.610e-6650.21Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
M1VIK68.020e-6553.49Similar to Gbp1p protein n=2 Tax=cellular organism... [more]
A0A1X6NMV26.770e-5959.68Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0BFC32.320e-5744.05Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
M2Y1648.720e-5754.84Poly(A) binding protein n=1 Tax=Galdieria sulphura... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 154..226
e-value: 1.1E-20
score: 84.8
coord: 262..334
e-value: 8.8E-19
score: 78.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 155..223
e-value: 2.2E-17
score: 62.6
coord: 263..331
e-value: 1.7E-18
score: 66.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 153..230
score: 15.562085
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 261..338
score: 15.732639
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 121..259
e-value: 5.7E-27
score: 96.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 260..338
e-value: 1.6E-22
score: 81.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..147
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 122..337
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 151..333

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:298055..299281 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7066.t1Ggra7066.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 298055..299281 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7066.t1 ID=Ggra7066.t1|Name=Ggra7066.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MGALGGEGAMRARADALPAMRRMLADCVAGWGGGAQAAQRRRRRGRRDVA
ASRDALPACASGAAGDVRRRGFDGAVPALVERASAYPRSQRLVLRLHYAC
ALHPGAGSDASSLTRNAATAMEDVHMDSFHDEQQASTPPQSNGAAPSAPT
GGRRVYVGNLSWDTRWQGLKDHMREAGDVVHAEVFTESSGRSAGCGIVEF
ETPEFAQNAISTLNDSMLDGRSIFVRADREEGKPRRFDAEHGGGGGGGGG
YRGRRESDRGRKIVVWNLPYHIRWQDLKDLFRDYGNVIRADIPQTHDGKS
KGMGTVLFETEMEADRAIREMTGKEVDGRVVDCRLDKFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf