Ggra701.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra701.t1
Unique NameGgra701.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Homology
BLAST of Ggra701.t1 vs. uniprot
Match: A0A2V3J4X5 (Histone H3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4X5_9FLOR)

HSP 1 Score: 159 bits (401), Expect = 8.170e-45
Identity = 83/114 (72.81%), Postives = 95/114 (83.33%), Query Frame = 0
Query:  182 LKRLSGRRPVRYRPQPGMRAIKEIRMYQRSVSLLIRRLPFARLVKEITSNYHHALRWRVDAIEALQISAEVYVVNLVEDANLCAIHGKRVTIMPKDIRLARRIRGLHNDPAKNL 295
            LK  +  RP R+RP  G RAI EIR YQR+ +LLIRRLPFARLVKEIT ++HH LRWRVDA+EALQ +AE +VV+L+EDANLCAIHGKRVTIMP+DI LARRIRGL NDPA  L
Sbjct:   60 LKSPAATRPHRFRP--GTRAIMEIRKYQRTTNLLIRRLPFARLVKEITQSFHHDLRWRVDAVEALQAAAESFVVSLMEDANLCAIHGKRVTIMPRDIHLARRIRGLSNDPANYL 171          
BLAST of Ggra701.t1 vs. uniprot
Match: R7QD76 (Similar to Histone H3 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD76_CHOCR)

HSP 1 Score: 155 bits (392), Expect = 1.940e-43
Identity = 78/126 (61.90%), Postives = 99/126 (78.57%), Query Frame = 0
Query:  176 TSSSPSLKRLSGRRPVR------YRPQPGMRAIKEIRMYQRSVSLLIRRLPFARLVKEITSNYHHALRWRVDAIEALQISAEVYVVNLVEDANLCAIHGKRVTIMPKDIRLARRIRGLHNDPAKNL 295
            T + PSL +    R  R      +R +PG RAI EIR YQRS +LL+RRLPFARLVKE+T+ +HH+LRWRVDA+EALQ ++E ++V ++EDANLCA+HGKR+TIMPKDI LARRIRGL NDP+ N+
Sbjct:   48 TRAPPSLTKAGSARAARAANPRPHRFRPGTRAIMEIRKYQRSTNLLLRRLPFARLVKEVTTTFHHSLRWRVDALEALQEASEDFLVGVMEDANLCAMHGKRITIMPKDIHLARRIRGLRNDPSSNM 173          
BLAST of Ggra701.t1 vs. uniprot
Match: A0A7S3A3A6 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A3A6_9RHOD)

HSP 1 Score: 144 bits (364), Expect = 2.290e-39
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = 0
Query:  190 PVRYRPQPGMRAIKEIRMYQRSVSLLIRRLPFARLVKEITSNYHHALRWRVDAIEALQISAEVYVVNLVEDANLCAIHGKRVTIMPKDIRLARRIRGLHNDP 291
            P ++R +PG RA+ EIR YQ+S +LL+RRLPFARLVKEIT +YHH LRWR +A+EALQ SAE Y+V L+EDANLCAIH  RVTIMP+D+ LARRIRG  +DP
Sbjct:   59 PKKHRFRPGTRALMEIRKYQKSTTLLLRRLPFARLVKEITQHYHHDLRWRAEALEALQSSAEDYLVGLLEDANLCAIHSNRVTIMPRDLHLARRIRGYKDDP 160          
BLAST of Ggra701.t1 vs. uniprot
Match: A0A5J4Z7T8 (Histone H3.3 type a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7T8_PORPP)

HSP 1 Score: 143 bits (360), Expect = 3.230e-39
Identity = 68/100 (68.00%), Postives = 85/100 (85.00%), Query Frame = 0
Query:  192 RYRPQPGMRAIKEIRMYQRSVSLLIRRLPFARLVKEITSNYHHALRWRVDAIEALQISAEVYVVNLVEDANLCAIHGKRVTIMPKDIRLARRIRGLHNDP 291
            ++R +PG RA+ EIR +Q+S  LLIRRLPFARLVKEIT +YHH LRW+VDA++ALQ +AE Y+V L+EDANLCAIH +RVTIMP+D+ LARRIRG  +DP
Sbjct:   27 KHRFRPGTRALMEIRKFQKSTDLLIRRLPFARLVKEITQHYHHGLRWQVDAVQALQYAAEDYLVGLLEDANLCAIHARRVTIMPRDLHLARRIRGYRDDP 126          
BLAST of Ggra701.t1 vs. uniprot
Match: M2VSS2 (Histone H3 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VSS2_GALSU)

HSP 1 Score: 142 bits (359), Expect = 7.430e-39
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = 0
Query:  179 SPSLKRLSGRRPVRYRPQPGMRAIKEIRMYQRSVSLLIRRLPFARLVKEITSNYHHALRWRVDAIEALQISAEVYVVNLVEDANLCAIHGKRVTIMPKDIRLARRIRGLHNDP 291
            S + K  +G +  RYRP  G RA+ EIR +Q+S  LLIR+LPFARLVKEIT +YHH LRW+V+A+ ALQ SAE Y+V L+EDANLCAIH KRVTIMPKD++LARRIRG  +DP
Sbjct:   32 SSTAKNSTGVKAHRYRP--GTRALMEIRKFQKSTELLIRKLPFARLVKEITQHYHHELRWQVEAVLALQTSAEDYLVGLLEDANLCAIHAKRVTIMPKDMQLARRIRGYRDDP 142          
BLAST of Ggra701.t1 vs. uniprot
Match: A0A813MU55 (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813MU55_9BILA)

HSP 1 Score: 126 bits (317), Expect = 1.730e-32
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 0
Query:  177 SSSPSLKRLSGRRPVR-YRPQPGMRAIKEIRMYQRSVSLLIRRLPFARLVKEITSNYHHALRWRVDAIEALQISAEVYVVNLVEDANLCAIHGKRVTIMPKDIRLARRIRG 286
            S+ PS    S  RPV+ Y+ +PG  A+KEIR YQ+S  LLIR+LPF RLV+EI+ NY   LR++  A++ALQ +AE Y+V L ED NLC IH KRVTIMPKDI LARRIRG
Sbjct:   42 STQPSTSSSSNERPVKIYKHRPGTLALKEIRRYQKSTELLIRKLPFQRLVREISQNYKDDLRFQASALDALQEAAESYLVGLFEDTNLCCIHAKRVTIMPKDIHLARRIRG 152          
BLAST of Ggra701.t1 vs. uniprot
Match: A9BL48 (Cenp-A n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BL48_HEMAN)

HSP 1 Score: 125 bits (313), Expect = 3.150e-32
Identity = 59/94 (62.77%), Postives = 78/94 (82.98%), Query Frame = 0
Query:  196 QPGMRAIKEIRMYQRSVSLLIRRLPFARLVKEITSNYHHALRWRVDAIEALQISAEVYVVNLVEDANLCAIHGKRVTIMPKDIRLARRIRGLHN 289
            +PG++A++EIR +Q+S  LLI RLPFARLVKEIT  +HH+L+W+  A+EALQ +AE Y++ L+EDANL A+H KRVT+MPKDI LA+RIRG  N
Sbjct:   32 RPGIKALREIRKFQKSTDLLIHRLPFARLVKEITLEFHHSLQWQSVALEALQYAAEDYIIGLMEDANLSALHAKRVTVMPKDIHLAKRIRGNKN 125          
BLAST of Ggra701.t1 vs. uniprot
Match: J7G1E4 (Centromeric histone-3 like protein n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7G1E4_9CRYP)

HSP 1 Score: 123 bits (309), Expect = 1.440e-31
Identity = 60/98 (61.22%), Postives = 81/98 (82.65%), Query Frame = 0
Query:  192 RYRPQPGMRAIKEIRMYQRSVSLLIRRLPFARLVKEITSNYHHALRWRVDAIEALQISAEVYVVNLVEDANLCAIHGKRVTIMPKDIRLARRIRGLHN 289
            ++R +PG++A++EIR +QRS  LLI RLPFARLVKEIT N+ ++L+W+  A+EA+Q ++E Y+V L+EDANL A+H KRVT+MPKDI LARRIRG  N
Sbjct:   34 KFRFRPGIKALREIRKFQRSTDLLIHRLPFARLVKEITLNFQYSLQWQSVALEAIQYASEDYIVGLMEDANLSALHAKRVTVMPKDITLARRIRGDKN 131          
BLAST of Ggra701.t1 vs. uniprot
Match: A9VDC3 (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VDC3_MONBE)

HSP 1 Score: 123 bits (308), Expect = 3.240e-31
Identity = 61/103 (59.22%), Postives = 82/103 (79.61%), Query Frame = 0
Query:  187 GRRPVRYRPQPGMRAIKEIRMYQRSVSLLIRRLPFARLVKEITSNYHHA--LRWRVDAIEALQISAEVYVVNLVEDANLCAIHGKRVTIMPKDIRLARRIRGL 287
            G R  R+R +PG  A++EIR YQ+S +LLIR+LPFAR+V+E+  +++H   LRW+  AIEALQ +AE Y+V L+ED NLCAIH KRVT+M +DI+LARRIRG+
Sbjct:   42 GTRQTRHRFRPGTVALREIRRYQKSTNLLIRKLPFARVVREVAQDFYHTAPLRWQAKAIEALQEAAEAYIVRLLEDGNLCAIHAKRVTLMVRDIQLARRIRGV 144          
BLAST of Ggra701.t1 vs. uniprot
Match: A0A5J4XYP6 (Histone H3 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XYP6_9CHLO)

HSP 1 Score: 122 bits (306), Expect = 4.790e-31
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 0
Query:  192 RYRPQPGMRAIKEIRMYQRSVSLLIRRLPFARLVKEITSNYHHALRWRVDAIEALQISAEVYVVNLVEDANLCAIHGKRVTIMPKDIRLARRIRG 286
            R R +PG  A+KEIR YQ+S  LLIRR PF RLV+EIT ++    RW+V A+EALQ +AE Y+V ++ED+NLCAIH KRVTIMPKD++LA+RIRG
Sbjct:   40 RTRARPGANALKEIRKYQKSTELLIRRAPFQRLVREITRDFQADFRWQVRAVEALQEAAEAYLVGMLEDSNLCAIHAKRVTIMPKDMQLAKRIRG 134          
The following BLAST results are available for this feature:
BLAST of Ggra701.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4X58.170e-4572.81Histone H3 n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
R7QD761.940e-4361.90Similar to Histone H3 n=1 Tax=Chondrus crispus Tax... [more]
A0A7S3A3A62.290e-3968.63Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4Z7T83.230e-3968.00Histone H3.3 type a n=1 Tax=Porphyridium purpureum... [more]
M2VSS27.430e-3965.49Histone H3 n=1 Tax=Galdieria sulphuraria TaxID=130... [more]
A0A813MU551.730e-3260.36Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A9BL483.150e-3262.77Cenp-A n=1 Tax=Hemiselmis andersenii TaxID=464988 ... [more]
J7G1E41.440e-3161.22Centromeric histone-3 like protein n=1 Tax=Chroomo... [more]
A9VDC33.240e-3159.22Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A5J4XYP64.790e-3163.16Histone H3 n=1 Tax=Trebouxia sp. A1-2 TaxID=260899... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..181
NoneNo IPR availablePANTHERPTHR11426:SF191HISTONE H3-LIKE CENTROMERIC PROTEIN Acoord: 154..288
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 187..289
e-value: 1.7E-45
score: 167.1
IPR000164Histone H3/CENP-APANTHERPTHR11426HISTONE H3coord: 154..288
IPR000164Histone H3/CENP-APROSITEPS00959HISTONE_H3_2coord: 220..228
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 150..288
e-value: 4.5E-43
score: 148.3
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 158..287
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 161..285
e-value: 9.0E-34
score: 116.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000205_piloncontigtig00000205_pilon:117011..126322 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra701.t1Ggra701.t1Gracilaria gracilis GNS1m malemRNAtig00000205_pilon 117011..126322 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra701.t1 ID=Ggra701.t1|Name=Ggra701.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MARLLTRLFSDAPPFHRGGGAPSGGSAQFERGALWASLVRDARVKHDTVL
QPLPNGYGDNEHNVYASGALYQVHWTVRHFGHVRFFLRVDDDGFLCVDKL
LYEISKLPYAPRVVERSPPLARHGAAAIFAGTALQIIPSNTNEWWFGWWR
KEQTQQRKAVARKALAEERRAPPPLTSSSPSLKRLSGRRPVRYRPQPGMR
AIKEIRMYQRSVSLLIRRLPFARLVKEITSNYHHALRWRVDAIEALQISA
EVYVVNLVEDANLCAIHGKRVTIMPKDIRLARRIRGLHNDPAKNL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3