Ggra6929.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6929.t1
Unique NameGgra6929.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length287
Homology
BLAST of Ggra6929.t1 vs. uniprot
Match: A0A2V3IPH9 (DNA-directed DNA polymerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPH9_9FLOR)

HSP 1 Score: 352 bits (902), Expect = 2.940e-107
Identity = 185/306 (60.46%), Postives = 226/306 (73.86%), Query Frame = 0
Query:    2 FLGWLLKKVFRQLI---------------------------VDGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAGLLFVDRVNYGALPAPEKSSILTGEYVQTQTGSTSRKRTHASQDIPFARMEWYFPRYHPLPIAVLWSQVVEEFIRRPIIQRCVSEESGSLEQIEDNTETIGENEDSIETEKRNKKKLLLRLRGDGFAEEVKSLVRGLTTQLLEKVHEIREKTPSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRSLLQLLGVRKFAAEAQFVNPAAPVLLQGVIC 280
            FLGWL+KKVFRQLI                           +DGLRYAGFLEKT+ + PL R++RFHPVIGVYAGLLFVDR NYGALPAPE+S IL G++ + Q  S++R+R +ASQDIP  RMEW FPRY PLPIAVLW+QVVEEFIRRP++QR  +EE  +  +++ + ++        E ++   KK  LR RGDGFAEEVKSLVR LTTQLL+KVHE+REK+PSL FP+VPSA  ++    RNPALEFVRS+CHVLS D++S+EEVA M R+LLQ+LGVR+FA EAQF +PA PVLLQ VIC
Sbjct: 2083 FLGWLVKKVFRQLIGELRNLGASVVYASSSRLLLATPKTQTIDGLRYAGFLEKTVKEKPLFRHLRFHPVIGVYAGLLFVDRFNYGALPAPEESLILNGDFAEAQALSSNRRRVYASQDIPLVRMEWDFPRYLPLPIAVLWTQVVEEFIRRPMVQRLRTEEMEASMELDCSEQS--------EHDEPKSKKRCLRPRGDGFAEEVKSLVRSLTTQLLQKVHEMREKSPSLTFPRVPSALTTVTARNRNPALEFVRSLCHVLSMDSTSTEEVADMRRNLLQMLGVREFATEAQFFDPALPVLLQDVIC 2380          
BLAST of Ggra6929.t1 vs. uniprot
Match: R7QE00 (DNA polymerase epsilon catalytic subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE00_CHOCR)

HSP 1 Score: 313 bits (802), Expect = 7.750e-94
Identity = 170/309 (55.02%), Postives = 212/309 (68.61%), Query Frame = 0
Query:    2 FLGWLLKKVFRQLI---------------------------VDGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAGLLFVDRVNYGALPAPEKSSILTGEYVQTQTGSTSRKRTHASQDIPFARMEWYFPRYHPLPIAVLWSQVVEEFIRRPIIQR--CVSEESGSLEQIEDNTETIGENEDSIETEKRNKKKLLLRLRGDGFAEEVKSLVRGLTTQLLEKVHEIREKTPSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRSLLQLLGVRKFAAEAQFVNPAAPVLLQGVICN 281
            FLGWL+ KVFRQL+                           VDGLRYAGFLEKT+   PL R++ F P+IGVY+GLLFVDR NYGALPAPE++SIL+GE+ QT + +   +RT AS++IP+ARM W   RY P+P+AVLW+QVVEEFIRRP++ R   +  E+GS+E + D   + G +E  I      KK    R RGDGFA+EV+   R LT QLLEK+HEIREKTP+LVFP VPS   +  +  RNPALEFVRS+C+VL  D ++SEEVA M RSLL+LLGVR+FA EAQF +PA PV L+ VIC 
Sbjct: 1880 FLGWLITKVFRQLVGELKDLGATVVFASMSRLILATPKTQTVDGLRYAGFLEKTVKSKPLFRHVHFEPLIGVYSGLLFVDRFNYGALPAPEEASILSGEFGQTVSKNAVTRRTCASREIPYARMMWDMARYLPIPVAVLWTQVVEEFIRRPMVVRLRAIENEAGSIEMVSDTPASDGLSEQQIRATDLQKKHF--RPRGDGFADEVQDFTRNLTGQLLEKIHEIREKTPTLVFPSVPSIL-NATDRHRNPALEFVRSLCYVLGLDPAASEEVAGMRRSLLRLLGVREFAKEAQFKDPALPVPLRDVICT 2185          
BLAST of Ggra6929.t1 vs. uniprot
Match: A0A7S3EEA9 (DNA polymerase epsilon catalytic subunit n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEA9_9RHOD)

HSP 1 Score: 150 bits (378), Expect = 4.100e-37
Identity = 97/267 (36.33%), Postives = 144/267 (53.93%), Query Frame = 0
Query:   17 DGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAGLLFVDRVNYGALPAPEKSSILTGEYVQTQTGSTSRKRTHASQDIPFARMEWYFPRYHPLPIAVLWSQVVEEFIRRPIIQRCVSEESGSLEQIEDNTETIGENEDSIETEKRNKKKLLLRLRGDGFAE--EVKSLVRGLTTQLLEKVHEIREKTPSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRSLLQLLGVRKFAAEAQFVNPAAPVLLQGVICN 281
            DGLRYA F+E T+ +  +   IRF P+IGVY  LLF D  NY  +PA E+SSIL G+ V+    +T   R + ++++P +RM W    Y P P+A LW Q V+ FIR P+ +  V  +                       E R K+K      GDG  +  EV++ ++ +T ++ E + +I+E+TPSL  P   SA   LK   + P LE+V ++    S D S   EV+++ RS L LL V +F+A A++ +P A   L  VIC+
Sbjct:  894 DGLRYAAFIESTLREKAMFGGIRFAPLIGVYQSLLFADPFNYSGVPALEESSILEGK-VKVFNSTT---RVYGARNLPPSRMSWEVVDYLPTPVASLWMQTVDAFIRHPLQELQVGNQ-----------------------ENRGKEK------GDGSKQISEVRNFLKSVTPEIFESIQQIQEQTPSLEIPT--SAI--LKRKLQPPVLEYVTALMRTFSLDDSVQGEVSNLRRSALLLLNVPEFSASAKYSSPKATFRLPNVICS 1123          
BLAST of Ggra6929.t1 vs. uniprot
Match: A0A0F7SGV6 (DNA polymerase epsilon catalytic subunit n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SGV6_PHARH)

HSP 1 Score: 82.8 bits (203), Expect = 5.440e-14
Identity = 78/270 (28.89%), Postives = 128/270 (47.41%), Query Frame = 0
Query:   16 VDGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAGLLFVDRVNYGALPA-PEKSSILTGEYVQTQTGSTSRKRTHASQDIPFARMEWYFPRYHPLPIAVLWSQVVEEFIRRPI-IQRCVSE-ESGSLEQIEDNTETIGENEDSIETEKRNKKKLLLRLRGDGFAEEVKSLVRG-LTTQLLEKVHEIREKTPSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRSLLQLLGVRKFAAEAQFVNPAAPVLLQGVICN 281
            ++ + YA +L      N L R++ F  ++  +  LL++D  N+G +P  PE+S+       + + GS      H         ++W    + P  +   +  +V  FI +    +R  S+ E   L  I++ T+  G   D I+T++    K ++         ++  LV+  L TQ     H   E   +L FP++P A   +     NPALEFV+++CHVL      S EV  + R+LL L+GVR+FA +A F NP   + L  VIC 
Sbjct: 1906 INTVAYAKYLLTAANSNELFRHLSFE-IVNFWELLLWMDVQNHGGIPVMPEESA------QEIEVGS------HVID------LDWNIRSFLPPALQHDFEIIVSTFIDQMYRAKRQASDNEREPLRAIQNLTQATGPILDPIKTKEVGYGKKII---SKNLTRKMLGLVQNILITQRQAATHP--EIVETLTFPKLPGAHLKVS----NPALEFVKTVCHVLGLARDLSIEVQVLKRNLLDLVGVREFADQAIFKNPCEVLKLPSVICT 2147          
BLAST of Ggra6929.t1 vs. uniprot
Match: hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064513CF (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064513CF)

HSP 1 Score: 80.9 bits (198), Expect = 2.420e-13
Identity = 73/284 (25.70%), Postives = 131/284 (46.13%), Query Frame = 0
Query:   15 IVDGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAGLLFVDRVNYGALPAPEKSSILTGEYV--QTQTGSTSRKRTHASQDIPFARMEWYFPRYHPLPIAVLWSQVVEEFIRRPIIQRCVSE-----ESGSLEQIEDNTETIGENEDSIETEKRNKKKLLLRLRGDGFAEEVKS--------LVRGLTTQLLE--KVHEIREKTPSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRSLLQLLGVRKFAAEAQFVNPAAPVLLQGVICN 281
            I D  +Y  ++   I K  L  ++   P    +  LL++D  NYG +        LTG     Q Q+ STS    +A      +   W   ++ P  I   +  V+ +FI +  + +  +        GS + ++     + +N D     K+  K + L +  +   EE K         +      Q+L+  K  E++++     FPQ+P +  +      NPALEFV+S+CHVLS D S  ++V  + ++L++++ VR+F+ EA+F +P    +L  +IC+
Sbjct: 1909 IDDARQYCNYVISVIKKKELFSWLTIKPS-RFWHNLLWMDISNYGGI-----CHQLTGGNANQQQQSSSTSPDVNNAIDGTLVSH--WNISKFLPQSIQSSFILVITDFIHKLYLHKERNRIQDVMNGGSGDVVDSTNSNVDDNNDKS---KKGDKSIDLTVSSNWTEEEDKPQSHKWSQVVDSNRIVQILQGLKYSELKDE-----FPQLPGSHLTFT----NPALEFVKSVCHVLSLDKSMQDQVHRLRKNLMKIINVREFSEEARFKDPCLSYVLPDLICS 2172          
BLAST of Ggra6929.t1 vs. uniprot
Match: A0A8C4TAB8 (DNA polymerase epsilon catalytic subunit n=4 Tax=Polypteridae TaxID=8289 RepID=A0A8C4TAB8_ERPCA)

HSP 1 Score: 78.6 bits (192), Expect = 1.440e-12
Identity = 73/276 (26.45%), Postives = 121/276 (43.84%), Query Frame = 0
Query:   12 RQLIVDGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAG----LLFVDRVNYGALPAPEKSSILTGEYVQTQTGSTSRKRTHASQDIP-FARMEWYFPRYHPLPIAVLWSQVVEEFIRRPIIQRCVSEESGSLEQIEDNTETIGENEDSIETEKRNKKKLLLRLRGDGFAEEVKSLVRGLTTQLLEKVHEIREKT-PSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRSLLQLLGVRKFAAEAQFVNPAAPVLLQGVICN 281
            ++ I D + Y  ++ K+I    +     FH +   ++     LL++D  NYG +     SS+L GE              +  Q +P  A  + YF       I  ++  + EE  R       +    GS  QI  + E +G+          N    ++    +    E+      +T ++ +KV   R  T PS +FP +P +   L     NPALEF++ +C VLS D + + +V  + R LL+L+ V +F+ EAQF +P    +L  VIC 
Sbjct: 1881 KRRIEDAIAYVEYITKSIHSREI-----FHSLSLSFSRCWEFLLWMDLANYGGIKGKLPSSVLYGETTDKPEEDLIESNWNIMQYLPQVASCQNYFLMIISAYIVAIYHSMKEELRRNAPGATPIKRRGGS--QI--SQEPLGD---------ANALPGMITFSQEYVCSELTQNFFTITQKIQKKVTGTRHATEPSELFPVLPGSHLPLS----NPALEFIKYVCKVLSLDANVTNQVNKLKRDLLRLIDVGEFSEEAQFKDPCQSYILAEVICR 2134          
BLAST of Ggra6929.t1 vs. uniprot
Match: A0A293N9H8 (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293N9H8_ORNER)

HSP 1 Score: 77.0 bits (188), Expect = 4.410e-12
Identity = 71/278 (25.54%), Postives = 121/278 (43.53%), Query Frame = 0
Query:   12 RQLIVDGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAGLLFVDRVNYGALPAPEKSSILTGEYVQTQTGSTSRKRTHASQDIPFARMEWYFPRYHP-LPIAVLWSQVVEEFIRRPIIQRCVSEESGSLEQIEDNTETIGENEDSIETEKRNKKKLLLRLRGDGFAEEVKSLVRGLTTQLLEKV-HEIREKTPSL------VFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRSLLQLLGVRKFAAEAQFVNPAAPVLLQGVICN 281
            R  + DGL +A ++  +I    L   ++   V   +  LL++D  N+G                    G   +K     +D     M W   R+ P   +   ++ V+  +I    +Q  +  E+  L Q++  T +    E S+  +                AE ++  V G   Q L  +  +I++K PS       VFP +P           NPALEFV+++C VLS DT+ +E+V  + R LL+L+GV +F+  A +++P    +L  VIC+
Sbjct:  933 RHRLDDGLAHAEYVINSIRNKELFHSLQIS-VQSTWELLLWLDSANHG--------------------GVRGKKSDDDPEDEAEVCMFWNLQRFLPETAVQDNFNAVIISYIEAVYLQ--MQREASQLSQVQRRTSSQAPKEQSVSKD---------------IAEYLQVFVGGELAQRLYGITQKIQQKMPSKIVNGENVFPSIPGHHLD----PSNPALEFVKAVCKVLSLDTNITEQVIKVRRDLLKLIGVGEFSDHATWIDPCLSFVLTEVICS 1168          
BLAST of Ggra6929.t1 vs. uniprot
Match: A0A6P8IMS9 (DNA polymerase epsilon catalytic subunit n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IMS9_ACTTE)

HSP 1 Score: 77.0 bits (188), Expect = 4.750e-12
Identity = 76/286 (26.57%), Postives = 121/286 (42.31%), Query Frame = 0
Query:   12 RQLIVDGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAGLLFVDRVNYGALPAPEKSSILTGEYVQTQTGSTSRKRTHAS------QDIPFARMEWYFPRYHPLPIAVLWSQVVEEFIRRPIIQRCVSEESGSLEQIEDNTETIGENEDSIETEKRNKKKLLLRLRGDGFAEEVKSLVRG-LTTQLLEKVHEIRE---------KTPSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRSLLQLLGVRKFAAEAQFVNPAAPVLLQGVICN 281
            ++ + D L Y  F+ K+I    L   I   P    +  L+++D+ N+G +    +  + TG      TG  S      +       + P   M W   +Y P   +    Q   + +    I       S     ++  T  I     S +++K  +      L    FA+E    ++G LT QL     +I+          K PS  FP +P ++  L     NPALEFV+ IC VLS D ++  +V  + R LL+L+GV +F+ EA F +P    +L  VIC 
Sbjct: 1855 KRSVSDALAYVEFILKSIQSKDLFHSIDIVPT-SCWEFLMWLDQANHGGV----RGKLPTGAEENGDTGGDSEDEIQGTPENNNVHEEPQIEMNWNIGKYLPSGAS---CQNFFQIVIAGHIHAMYKHSSEERRTVQPGTTPIRRRGGSSQSQKTVQSSATPSL--VTFAQE---RIQGELTQQLFSITQKIQHTLSGDRSSNKDPSSEFPVLPGSYLPLN----NPALEFVKYICKVLSLDPNTLHQVNKLRRDLLKLIGVGEFSEEAAFKDPCLSFVLPEVICQ 2123          
BLAST of Ggra6929.t1 vs. uniprot
Match: G3U301 (DNA polymerase epsilon catalytic subunit n=1 Tax=Loxodonta africana TaxID=9785 RepID=G3U301_LOXAF)

HSP 1 Score: 76.6 bits (187), Expect = 6.390e-12
Identity = 74/278 (26.62%), Postives = 123/278 (44.24%), Query Frame = 0
Query:   12 RQLIVDGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAG----LLFVDRVNYGALPAPEKSSILTGEYVQTQTGSTSRKRTHASQDIPFARMEWYFPRYHPLPIAV--LWSQVVEEFIRRPIIQRCVSEESGSLEQIEDNTETIGENEDSIETE-KRNKKKLLLRLRGDGFAEEVKSLVRGLTTQLLEKVHEIREKT-PSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRSLLQLLGVRKFAAEAQFVNPAAPVLLQGVICN 281
            ++ I D L Y  ++  +I    +     FH +   ++     LL++D  NYG +      SI  G+   T  G       H+  +       W   ++ P   +    +  +V  +I    +   + EE           +  G ++ S ETE         +    D  A E+      +T ++ +KV   R  T PS +FPQ+P +   L     NPALEF++ +C VLS DT+ + +V  + R LL+L+GV +F+ EAQF +P    +L  VIC+
Sbjct: 1878 KRRIEDALAYVEYITNSIHSKEI-----FHSLTISFSRCWEFLLWMDPSNYGGIKGKVSPSIHCGQVRGTSLGELKPHSEHSRLE-DLLENNWNILQFLPQAASCQSYFLMIVSAYI--VAVYHSMKEELRRNAPGSTPVKRRGASQFSQETEGAAGALPGTITFSQDYVANELTQNFFTITQKIQKKVTGFRNSTEPSEMFPQLPGSHLLLN----NPALEFIKYVCKVLSLDTNITNQVNKLRRDLLRLVGVGEFSPEAQFRDPCRSHVLSEVICH 2143          
BLAST of Ggra6929.t1 vs. uniprot
Match: DNA polymerase epsilon catalytic subunit A-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018858E87 (DNA polymerase epsilon catalytic subunit A-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018858E87)

HSP 1 Score: 76.3 bits (186), Expect = 8.600e-12
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 0
Query:  185 LTTQLLEKVHEIREKTPSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRSLLQLLGVRKFAAEAQFVNPAAPVLLQGVICN 281
            +T ++ +K+H  R   P+ +FPQ+  +   ++    NPALEFV++IC VLS D     EV+ + R LL+L+GV +FAAEA++V+P    +L  VIC 
Sbjct: 2045 ITQKMQKKLHTTRGSEPNALFPQLTGSHLLMQ----NPALEFVKAICKVLSLDQHVEAEVSKLRRDLLKLIGVGEFAAEAEWVDPCVSHVLPEVICK 2137          
The following BLAST results are available for this feature:
BLAST of Ggra6929.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPH92.940e-10760.46DNA-directed DNA polymerase n=1 Tax=Gracilariopsis... [more]
R7QE007.750e-9455.02DNA polymerase epsilon catalytic subunit n=1 Tax=C... [more]
A0A7S3EEA94.100e-3736.33DNA polymerase epsilon catalytic subunit n=1 Tax=R... [more]
A0A0F7SGV65.440e-1428.89DNA polymerase epsilon catalytic subunit n=1 Tax=P... [more]
hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064513CF2.420e-1325.70hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8C4TAB81.440e-1226.45DNA polymerase epsilon catalytic subunit n=4 Tax=P... [more]
A0A293N9H84.410e-1225.54DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A6P8IMS94.750e-1226.57DNA polymerase epsilon catalytic subunit n=1 Tax=A... [more]
G3U3016.390e-1226.62DNA polymerase epsilon catalytic subunit n=1 Tax=L... [more]
DNA polymerase epsilon catalytic subunit A-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018858E878.600e-1241.24DNA polymerase epsilon catalytic subunit A-like n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029703DNA polymerase epsilon catalytic subunitPANTHERPTHR10670DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 16..281

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:80036..80979 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6929.t1Ggra6929.t1Gracilaria gracilis GNS1m malemRNAtig00000115_pilon 80036..80979 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6929.t1 ID=Ggra6929.t1|Name=Ggra6929.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MFLGWLLKKVFRQLIVDGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAGL
LFVDRVNYGALPAPEKSSILTGEYVQTQTGSTSRKRTHASQDIPFARMEW
YFPRYHPLPIAVLWSQVVEEFIRRPIIQRCVSEESGSLEQIEDNTETIGE
NEDSIETEKRNKKKLLLRLRGDGFAEEVKSLVRGLTTQLLEKVHEIREKT
PSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRS
LLQLLGVRKFAAEAQFVNPAAPVLLQGVICNIVVLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029703POL2