Ggra6929.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6929.t1
Unique NameGgra6929.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:80036..80979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3988.XP_002529065.1
Preferred namePOLE
PFAMsDNA_pol_B,DNA_pol_B_exo1,DUF1744
Max annot lvl35493|Streptophyta
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
GOsGO:0000082,GO:0000228,GO:0000278,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903047,GO:1990234
Evalue1.25e-14
EggNOG OGsCOG0417@1|root,KOG1798@2759|Eukaryota,37RK5@33090|Viridiplantae,3GCMP@35493|Streptophyta,4JGWX@91835|fabids
EC2.7.7.7
DescriptionDNA polymerase epsilon catalytic subunit
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6929Ggra6929Gracilaria gracilis GNS1m malegenetig00000115_pilon 80036..80979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6929.t1Ggra6929.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 80036..80979 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6929.t1.start1Ggra6929.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 80036..80038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6929.t1.CDS1Ggra6929.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 80036..80081 +
Ggra6929.t1.CDS2Ggra6929.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000115_pilon 80165..80979 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6929.t1.exon1Ggra6929.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 80036..80081 +
Ggra6929.t1.exon2Ggra6929.t1.exon2Gracilaria gracilis GNS1m maleexontig00000115_pilon 80165..80979 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6929.t1.intron1Ggra6929.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000115_pilon 80082..80164 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6929.t1.stop1Ggra6929.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 80977..80979 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6929.t1 ID=Ggra6929.t1|Name=Ggra6929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=287bp
MFLGWLLKKVFRQLIVDGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAGL
LFVDRVNYGALPAPEKSSILTGEYVQTQTGSTSRKRTHASQDIPFARMEW
YFPRYHPLPIAVLWSQVVEEFIRRPIIQRCVSEESGSLEQIEDNTETIGE
NEDSIETEKRNKKKLLLRLRGDGFAEEVKSLVRGLTTQLLEKVHEIREKT
PSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRS
LLQLLGVRKFAAEAQFVNPAAPVLLQGVICNIVVLW*
back to top

spliced messenger RNA

>Ggra6929.t1 ID=Ggra6929.t1|Name=Ggra6929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000115_pilon:80036..80979+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTTAGGCTGGCTCCTTAAGAAGGTATTCCGACAACTGATAGTTGA
TGGACTGAGGTATGCTGGATTTCTTGAGAAAACTATCACTAAAAACCCTC
TTTCCCGATATATCCGTTTCCATCCTGTGATAGGCGTTTATGCAGGGCTC
TTGTTTGTAGACAGAGTTAACTACGGTGCTCTTCCGGCGCCAGAAAAATC
TTCAATTTTGACCGGGGAGTATGTCCAAACTCAAACGGGAAGCACGAGTC
GCAAGCGTACTCATGCAAGTCAGGACATCCCATTCGCTCGCATGGAGTGG
TACTTTCCGCGTTATCATCCGCTCCCGATTGCTGTTCTGTGGTCACAAGT
CGTGGAAGAATTTATTCGACGACCGATAATTCAAAGATGTGTTTCGGAAG
AGTCCGGGTCCTTGGAACAGATTGAGGACAACACGGAAACAATTGGCGAA
AACGAAGATTCCATAGAGACCGAGAAGAGAAATAAGAAGAAGCTTTTATT
AAGACTGAGAGGGGATGGGTTTGCCGAAGAAGTGAAATCGCTCGTTAGGG
GACTAACAACTCAGCTATTGGAGAAGGTGCACGAAATACGCGAGAAGACG
CCATCTTTGGTGTTTCCCCAAGTTCCCTCTGCCTTTTGTTCACTCAAGGA
AGGCAAACGAAACCCAGCTCTTGAATTTGTTCGTTCGATTTGTCACGTTC
TTTCTTTTGATACTTCATCATCTGAAGAAGTGGCGCACATGCCTCGAAGC
CTGTTGCAGCTTTTGGGAGTTCGGAAATTTGCTGCAGAAGCCCAGTTTGT
TAATCCGGCAGCGCCGGTGCTTCTTCAGGGCGTCATCTGTAATATTGTAG
TGCTGTGGTGA
back to top

protein sequence of Ggra6929.t1

>Ggra6929.t1 ID=Ggra6929.t1|Name=Ggra6929.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MFLGWLLKKVFRQLIVDGLRYAGFLEKTITKNPLSRYIRFHPVIGVYAGL
LFVDRVNYGALPAPEKSSILTGEYVQTQTGSTSRKRTHASQDIPFARMEW
YFPRYHPLPIAVLWSQVVEEFIRRPIIQRCVSEESGSLEQIEDNTETIGE
NEDSIETEKRNKKKLLLRLRGDGFAEEVKSLVRGLTTQLLEKVHEIREKT
PSLVFPQVPSAFCSLKEGKRNPALEFVRSICHVLSFDTSSSEEVAHMPRS
LLQLLGVRKFAAEAQFVNPAAPVLLQGVICNIVVLW*
back to top

mRNA from alignment at tig00000115_pilon:80036..80979+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6929.t1 ID=Ggra6929.t1|Name=Ggra6929.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=944bp|location=Sequence derived from alignment at tig00000115_pilon:80036..80979+ (Gracilaria gracilis GNS1m male)
ATGTTTTTAGGCTGGCTCCTTAAGAAGGTATTCCGACAACTGATAGGTGA
GTTGAGAAAAGCTGTGGAGCATCTGTCCTGTATGCTTCATCCTCTCGTCT
CATTCTTGCCACTCCCAAGACTCACACAGTTGATGGACTGAGGTATGCTG
GATTTCTTGAGAAAACTATCACTAAAAACCCTCTTTCCCGATATATCCGT
TTCCATCCTGTGATAGGCGTTTATGCAGGGCTCTTGTTTGTAGACAGAGT
TAACTACGGTGCTCTTCCGGCGCCAGAAAAATCTTCAATTTTGACCGGGG
AGTATGTCCAAACTCAAACGGGAAGCACGAGTCGCAAGCGTACTCATGCA
AGTCAGGACATCCCATTCGCTCGCATGGAGTGGTACTTTCCGCGTTATCA
TCCGCTCCCGATTGCTGTTCTGTGGTCACAAGTCGTGGAAGAATTTATTC
GACGACCGATAATTCAAAGATGTGTTTCGGAAGAGTCCGGGTCCTTGGAA
CAGATTGAGGACAACACGGAAACAATTGGCGAAAACGAAGATTCCATAGA
GACCGAGAAGAGAAATAAGAAGAAGCTTTTATTAAGACTGAGAGGGGATG
GGTTTGCCGAAGAAGTGAAATCGCTCGTTAGGGGACTAACAACTCAGCTA
TTGGAGAAGGTGCACGAAATACGCGAGAAGACGCCATCTTTGGTGTTTCC
CCAAGTTCCCTCTGCCTTTTGTTCACTCAAGGAAGGCAAACGAAACCCAG
CTCTTGAATTTGTTCGTTCGATTTGTCACGTTCTTTCTTTTGATACTTCA
TCATCTGAAGAAGTGGCGCACATGCCTCGAAGCCTGTTGCAGCTTTTGGG
AGTTCGGAAATTTGCTGCAGAAGCCCAGTTTGTTAATCCGGCAGCGCCGG
TGCTTCTTCAGGGCGTCATCTGTAATATTGTAGTGCTGTGGTGA
back to top

Coding sequence (CDS) from alignment at tig00000115_pilon:80036..80979+

>Ggra6929.t1 ID=Ggra6929.t1|Name=Ggra6929.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00000115_pilon:80036..80979+ (Gracilaria gracilis GNS1m male)
ATGTTTTTAGGCTGGCTCCTTAAGAAGGTATTCCGACAACTGATAGTTGA
TGGACTGAGGTATGCTGGATTTCTTGAGAAAACTATCACTAAAAACCCTC
TTTCCCGATATATCCGTTTCCATCCTGTGATAGGCGTTTATGCAGGGCTC
TTGTTTGTAGACAGAGTTAACTACGGTGCTCTTCCGGCGCCAGAAAAATC
TTCAATTTTGACCGGGGAGTATGTCCAAACTCAAACGGGAAGCACGAGTC
GCAAGCGTACTCATGCAAGTCAGGACATCCCATTCGCTCGCATGGAGTGG
TACTTTCCGCGTTATCATCCGCTCCCGATTGCTGTTCTGTGGTCACAAGT
CGTGGAAGAATTTATTCGACGACCGATAATTCAAAGATGTGTTTCGGAAG
AGTCCGGGTCCTTGGAACAGATTGAGGACAACACGGAAACAATTGGCGAA
AACGAAGATTCCATAGAGACCGAGAAGAGAAATAAGAAGAAGCTTTTATT
AAGACTGAGAGGGGATGGGTTTGCCGAAGAAGTGAAATCGCTCGTTAGGG
GACTAACAACTCAGCTATTGGAGAAGGTGCACGAAATACGCGAGAAGACG
CCATCTTTGGTGTTTCCCCAAGTTCCCTCTGCCTTTTGTTCACTCAAGGA
AGGCAAACGAAACCCAGCTCTTGAATTTGTTCGTTCGATTTGTCACGTTC
TTTCTTTTGATACTTCATCATCTGAAGAAGTGGCGCACATGCCTCGAAGC
CTGTTGCAGCTTTTGGGAGTTCGGAAATTTGCTGCAGAAGCCCAGTTTGT
TAATCCGGCAGCGCCGGTGCTTCTTCAGGGCGTCATCTGTAATATTGTAG
TGCTGTGGTGA
back to top