Ggra6926.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6926.t1
Unique NameGgra6926.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length114
Homology
BLAST of Ggra6926.t1 vs. uniprot
Match: A0A2V3IPH9 (DNA-directed DNA polymerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPH9_9FLOR)

HSP 1 Score: 175 bits (444), Expect = 1.240e-48
Identity = 83/113 (73.45%), Postives = 103/113 (91.15%), Query Frame = 0
Query:    1 MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGVYRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRAQILKELRELREKP 113
            MLLMCQAR++ IVAPNKHNGSAIGKLTEDGHVLE ETYIGGHVEA+RTGVYRSDL L F++DV AL+DLE++L++TL FAITVE+KT I+D+TNY+++R +I+++L  LREKP
Sbjct:  540 MLLMCQAREKRIVAPNKHNGSAIGKLTEDGHVLESETYIGGHVEALRTGVYRSDLPLCFDVDVDALEDLEKTLNETLRFAITVESKTNIDDITNYDEVRNEIVRQLHALREKP 652          
BLAST of Ggra6926.t1 vs. uniprot
Match: R7QE00 (DNA polymerase epsilon catalytic subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE00_CHOCR)

HSP 1 Score: 174 bits (440), Expect = 4.270e-48
Identity = 84/113 (74.34%), Postives = 100/113 (88.50%), Query Frame = 0
Query:    1 MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGVYRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRAQILKELRELREKP 113
            MLLMCQAR++ IVAPNK+NGSAIGKLT+DGHVLE ETYIGGHVEAIRTGVYRSDL L FNIDV+AL+DLE++LD+TL FAI VE K  ++DVTNY ++RA+I+K+L  LRE P
Sbjct:  510 MLLMCQAREKRIVAPNKYNGSAIGKLTDDGHVLESETYIGGHVEAIRTGVYRSDLPLQFNIDVTALEDLEKTLDETLRFAIEVEGKMSVDDVTNYAEVRAEIVKQLHRLRENP 622          
BLAST of Ggra6926.t1 vs. uniprot
Match: A0A2V3IHN6 (DNA polymerase epsilon catalytic subunit n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHN6_9FLOR)

HSP 1 Score: 169 bits (428), Expect = 1.710e-46
Identity = 80/113 (70.80%), Postives = 102/113 (90.27%), Query Frame = 0
Query:    1 MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGVYRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRAQILKELRELREKP 113
            MLLMCQAR++ I+APNKHNGSAIGKLTEDGHVLE ETYIGGHVEA+R+GVYRSDL L F++DV AL+DLE++L++TL FAITVE+KT I+D+TN +++R +I+++L  LREKP
Sbjct:  213 MLLMCQAREKRILAPNKHNGSAIGKLTEDGHVLESETYIGGHVEALRSGVYRSDLPLCFDVDVDALEDLEKTLNETLRFAITVESKTNIDDITNNDEVRNEIVRQLHALREKP 325          
BLAST of Ggra6926.t1 vs. uniprot
Match: C4JWA1 (DNA polymerase epsilon catalytic subunit n=1 Tax=Uncinocarpus reesii (strain UAMH 1704) TaxID=336963 RepID=C4JWA1_UNCRE)

HSP 1 Score: 120 bits (301), Expect = 2.340e-29
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 0
Query:    1 MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGVYRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRAQILKELRELREKP 113
            MLLM QA   +IV PNKH      +   DGH+L+ ETY+GGHVE+I  GV+RSD+ ++F+ID +A+D+L R LD  L F+ITVE K  +EDVTNYED++AQI + L  LR+ P
Sbjct:  437 MLLMVQAYKNNIVLPNKHKDPV--EAFWDGHLLDSETYVGGHVESIEAGVFRSDIPVNFSIDTTAVDELLRDLDAALTFSITVEEKKSLEDVTNYEDVKAQIAERLLNLRDTP 547          
BLAST of Ggra6926.t1 vs. uniprot
Match: A0A6A7C3Y8 (DNA polymerase epsilon catalytic subunit n=1 Tax=Piedraia hortae CBS 480.64 TaxID=1314780 RepID=A0A6A7C3Y8_9PEZI)

HSP 1 Score: 118 bits (295), Expect = 1.510e-28
Identity = 58/113 (51.33%), Postives = 81/113 (71.68%), Query Frame = 0
Query:    1 MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGVYRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRAQILKELRELREKP 113
            MLLM QA  ++IV PNKH      +   +GH+LE ETY+GGHVE+I  GV+RSD+   F+ID +A+D+L   LD  L F+ITVE K  +ED+ NYED++AQI++ L +L+E+P
Sbjct:  502 MLLMVQAYQKNIVLPNKHEQPQ--EAFWEGHLLESETYVGGHVESIEAGVFRSDIACDFSIDTTAVDELLNDLDAALTFSITVEEKKKMEDIANYEDVKAQIVERLMQLKEEP 612          
BLAST of Ggra6926.t1 vs. uniprot
Match: DPOE (DNA polymerase epsilon catalytic subunit A n=21 Tax=Aspergillus TaxID=5052 RepID=DPOE_ASPFU)

HSP 1 Score: 117 bits (294), Expect = 2.060e-28
Identity = 61/113 (53.98%), Postives = 79/113 (69.91%), Query Frame = 0
Query:    1 MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGVYRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRAQILKELRELREKP 113
            MLLM QA    IV PNKH      +   +GH+LE ETY+GGHVE+I  GV+RSD+ ++FNID +A+D+L R LD  L F+I VE K  ++DV NYED++AQI + L  LREKP
Sbjct:  514 MLLMVQAYKGEIVLPNKHKDPP--ESFYEGHLLESETYVGGHVESIEAGVFRSDIPVTFNIDTTAIDELLRDLDAALKFSIEVEEKKSMDDVVNYEDVKAQIAERLVNLREKP 624          
BLAST of Ggra6926.t1 vs. uniprot
Match: A0A2T2NAT2 (DNA polymerase epsilon catalytic subunit n=1 Tax=Corynespora cassiicola Philippines TaxID=1448308 RepID=A0A2T2NAT2_CORCC)

HSP 1 Score: 117 bits (293), Expect = 2.810e-28
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 0
Query:    1 MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGVYRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRAQILKELRELREKP 113
            MLLM QA  + IV PNKH   A  +   DGH+LE ETY+GGHVE+I  GV+RSD+   F +D  A+D+L R LD  L F+I VE K  +EDVTNYE+++AQI+++L EL+  P
Sbjct:  515 MLLMVQAYQKGIVLPNKHQ--APKEAFWDGHLLESETYVGGHVESIEAGVFRSDIAYDFAVDTGAVDELLRDLDAALQFSIVVEEKKKLEDVTNYEEVKAQIVEKLMELKATP 625          
BLAST of Ggra6926.t1 vs. uniprot
Match: A0A0D2I8N4 (DNA polymerase epsilon catalytic subunit n=1 Tax=Rhinocladiella mackenziei CBS 650.93 TaxID=1442369 RepID=A0A0D2I8N4_9EURO)

HSP 1 Score: 117 bits (293), Expect = 2.810e-28
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 0
Query:    1 MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGVYRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRAQILKELRELREKP 113
            MLLM QA  ++I+ PNKH      +   +GH+LE ETY+GGHVE+I  GV+R+D+ ++F ID +A+D+L R LD  L F ITVE K  ++DVTNYEDIRAQI + L  L++ P
Sbjct:  514 MLLMVQAYQKNIILPNKHQEPR--EAFWEGHLLESETYVGGHVESIEAGVFRADIPVNFAIDTTAIDELLRDLDAALKFCITVEEKKSLDDVTNYEDIRAQICERLNNLKDTP 624          
BLAST of Ggra6926.t1 vs. uniprot
Match: A0A6A6U6F7 (DNA polymerase epsilon catalytic subunit n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6U6F7_9PEZI)

HSP 1 Score: 117 bits (292), Expect = 3.830e-28
Identity = 56/113 (49.56%), Postives = 85/113 (75.22%), Query Frame = 0
Query:    1 MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGVYRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRAQILKELRELREKP 113
            MLLM QA +++I+ PNKH  S   +   DGH+LE ETY+GGHVE+I  GV+RSD+  +F +D +A+D+L   +D  L F+ITVE K  ++DV NYE+++A+I+++L++L+EKP
Sbjct:  509 MLLMVQAYEKNILLPNKH--SPPKEAFWDGHLLESETYVGGHVESIEAGVFRSDIPCNFALDTTAIDELINDMDAALKFSITVEEKKDLDDVVNYEEVKAEIIEKLQQLKEKP 619          
BLAST of Ggra6926.t1 vs. uniprot
Match: DNA polymeras-like protein epsilon n=1 Tax=Lindgomyces ingoldianus TaxID=673940 RepID=UPI00144AA13C (DNA polymeras-like protein epsilon n=1 Tax=Lindgomyces ingoldianus TaxID=673940 RepID=UPI00144AA13C)

HSP 1 Score: 117 bits (292), Expect = 3.830e-28
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 0
Query:    1 MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGVYRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRAQILKELRELREKP 113
            MLLM QA  + IV PNKH   A  +   DGH+LE ETY+GGHVE+I  GV+RSD+  +F +D +A+D+L   LD  L F+ITVE K  +EDV NY+D++AQI+++L +L+E P
Sbjct:  514 MLLMVQAYQKGIVLPNKHQ--APKEAFWDGHLLESETYVGGHVESIEAGVFRSDIPCNFAVDTTAIDELLEDLDAALKFSITVEEKKRLEDVANYDDVKAQIVEKLNQLKETP 624          
The following BLAST results are available for this feature:
BLAST of Ggra6926.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPH91.240e-4873.45DNA-directed DNA polymerase n=1 Tax=Gracilariopsis... [more]
R7QE004.270e-4874.34DNA polymerase epsilon catalytic subunit n=1 Tax=C... [more]
A0A2V3IHN61.710e-4670.80DNA polymerase epsilon catalytic subunit n=1 Tax=G... [more]
C4JWA12.340e-2953.98DNA polymerase epsilon catalytic subunit n=1 Tax=U... [more]
A0A6A7C3Y81.510e-2851.33DNA polymerase epsilon catalytic subunit n=1 Tax=P... [more]
DPOE2.060e-2853.98DNA polymerase epsilon catalytic subunit A n=21 Ta... [more]
A0A2T2NAT22.810e-2853.10DNA polymerase epsilon catalytic subunit n=1 Tax=C... [more]
A0A0D2I8N42.810e-2852.21DNA polymerase epsilon catalytic subunit n=1 Tax=R... [more]
A0A6A6U6F73.830e-2849.56DNA polymerase epsilon catalytic subunit n=1 Tax=M... [more]
DNA polymeras-like protein epsilon n=1 Tax=Lindgomyces ingoldianus TaxID=673940 RepID=UPI00144AA13C3.830e-2852.21DNA polymeras-like protein epsilon n=1 Tax=Lindgom... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..112
IPR029703DNA polymerase epsilon catalytic subunitPANTHERPTHR10670DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 1..113
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:75421..75762 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6926.t1Ggra6926.t1Gracilaria gracilis GNS1m malemRNAtig00000115_pilon 75421..75762 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6926.t1 ID=Ggra6926.t1|Name=Ggra6926.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=114bp
MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGV
YRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRA
QILKELRELREKP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029703POL2
IPR043502DNA/RNA_pol_sf