Ggra6926.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6926.t1
Unique NameGgra6926.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length114
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:75421..75762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog33188.XP_002583876.1
Preferred namePOL2
PFAMsDNA_pol_B,DNA_pol_B_exo1,DUF1744
Max annot lvl4751|Fungi
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000726,GO:0000731,GO:0000781,GO:0000784,GO:0000819,GO:0001672,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003729,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006272,GO:0006279,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006301,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010638,GO:0010847,GO:0010948,GO:0010964,GO:0010972,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031573,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0032991,GO:0033043,GO:0033044,GO:0033260,GO:0033314,GO:0033554,GO:0034061,GO:0034401,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0040029,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043596,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0044818,GO:0045004,GO:0045005,GO:0045786,GO:0045814,GO:0045892,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090052,GO:0090053,GO:0090230,GO:0090304,GO:0090305,GO:0097159,GO:0097549,GO:0098687,GO:0098813,GO:0140014,GO:0140097,GO:1900049,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902275,GO:1902292,GO:1902296,GO:1902315,GO:1902319,GO:1902494,GO:1902679,GO:1902749,GO:1902750,GO:1902969,GO:1902975,GO:1902983,GO:1903046,GO:1903047,GO:1903097,GO:1903460,GO:1903506,GO:1903507,GO:1905269,GO:1990234,GO:2000112,GO:2000113,GO:2001141,GO:2001252
Evalue4.08e-30
EggNOG OGsCOG0417@1|root,KOG1798@2759|Eukaryota,38CFB@33154|Opisthokonta,3NV4K@4751|Fungi,3QNEF@4890|Ascomycota,20BR5@147545|Eurotiomycetes,3B23K@33183|Onygenales
EC2.7.7.7
DescriptionDNA polymerase epsilon catalytic subunit A
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6926Ggra6926Gracilaria gracilis GNS1m malegenetig00000115_pilon 75421..75762 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6926.t1.start1Ggra6926.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 75421..75423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6926.t1.CDS1Ggra6926.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 75421..75762 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6926.t1.exon1Ggra6926.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 75421..75762 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6926.t1.stop1Ggra6926.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 75760..75762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6926.t1Ggra6926.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 75421..75762 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6926.t1 ID=Ggra6926.t1|Name=Ggra6926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=114bp
MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGV
YRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRA
QILKELRELREKP*
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spliced messenger RNA

>Ggra6926.t1 ID=Ggra6926.t1|Name=Ggra6926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp|location=Sequence derived from alignment at tig00000115_pilon:75421..75762+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCTCATGTGCCAGGCTCGTGATAGGCATATCGTAGCCCCAAACAA
GCACAATGGCAGCGCAATTGGAAAGCTTACCGAAGATGGTCACGTTCTTG
AACCTGAGACCTACATTGGTGGGCACGTGGAAGCCATACGAACGGGTGTG
TACCGAAGTGACCTGCTACTCTCCTTTAACATCGATGTATCTGCTTTGGA
CGACCTGGAAAGGTCCTTGGATGATACTCTTTGGTTTGCGATTACCGTAG
AGAACAAGACGCCCATCGAAGACGTAACGAACTATGAAGATATCCGAGCG
CAAATTCTCAAAGAGCTACGGGAGCTACGCGAAAAGCCTTAG
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protein sequence of Ggra6926.t1

>Ggra6926.t1 ID=Ggra6926.t1|Name=Ggra6926.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=114bp
MLLMCQARDRHIVAPNKHNGSAIGKLTEDGHVLEPETYIGGHVEAIRTGV
YRSDLLLSFNIDVSALDDLERSLDDTLWFAITVENKTPIEDVTNYEDIRA
QILKELRELREKP*
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mRNA from alignment at tig00000115_pilon:75421..75762+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6926.t1 ID=Ggra6926.t1|Name=Ggra6926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp|location=Sequence derived from alignment at tig00000115_pilon:75421..75762+ (Gracilaria gracilis GNS1m male)
ATGTTGCTCATGTGCCAGGCTCGTGATAGGCATATCGTAGCCCCAAACAA
GCACAATGGCAGCGCAATTGGAAAGCTTACCGAAGATGGTCACGTTCTTG
AACCTGAGACCTACATTGGTGGGCACGTGGAAGCCATACGAACGGGTGTG
TACCGAAGTGACCTGCTACTCTCCTTTAACATCGATGTATCTGCTTTGGA
CGACCTGGAAAGGTCCTTGGATGATACTCTTTGGTTTGCGATTACCGTAG
AGAACAAGACGCCCATCGAAGACGTAACGAACTATGAAGATATCCGAGCG
CAAATTCTCAAAGAGCTACGGGAGCTACGCGAAAAGCCTTAG
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Coding sequence (CDS) from alignment at tig00000115_pilon:75421..75762+

>Ggra6926.t1 ID=Ggra6926.t1|Name=Ggra6926.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=342bp|location=Sequence derived from alignment at tig00000115_pilon:75421..75762+ (Gracilaria gracilis GNS1m male)
ATGTTGCTCATGTGCCAGGCTCGTGATAGGCATATCGTAGCCCCAAACAA
GCACAATGGCAGCGCAATTGGAAAGCTTACCGAAGATGGTCACGTTCTTG
AACCTGAGACCTACATTGGTGGGCACGTGGAAGCCATACGAACGGGTGTG
TACCGAAGTGACCTGCTACTCTCCTTTAACATCGATGTATCTGCTTTGGA
CGACCTGGAAAGGTCCTTGGATGATACTCTTTGGTTTGCGATTACCGTAG
AGAACAAGACGCCCATCGAAGACGTAACGAACTATGAAGATATCCGAGCG
CAAATTCTCAAAGAGCTACGGGAGCTACGCGAAAAGCCTTAG
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