Ggra6881.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra6881.t1
Unique Name	Ggra6881.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	465

Homology

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BLAST of Ggra6881.t1 vs. uniprot
Match: A0A2V3IRH5 (BTB domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRH5_9FLOR)

HSP 1 Score: 295 bits (755), Expect = 2.260e-92
Identity = 186/476 (39.08%), Postives = 264/476 (55.46%), Query Frame = 0

Query:    1 MDPPETNIYLSKQAPDSSPYVPSYKDFHAHITYSLLDSPT-AGNLCDVVLETCDGHEVPACRALLASHSDYFRSIFFSEFQESTQKTIRVAMSKQVLRYVLIFAYTGFCPLVESGLDCTDFTQIHAKHEELKLLVQLSAAADYCGFYLLHGWCDSSLLSICNKFPVVSCTVLAAMNGEAAHRSLRAKLHDVIGIYYKNSFNVPEGLGKRSYAETVELRSRRRKLNLPPFREELEEVEEEDSDMAYGYGAYPRPSFPTSSYHRYPDGPVSYEP-FTPRTPSYLRGFSRGGRGRGRGA-LHSSVYHGNYEMATPISNYGK--PVSHTEADSKTYGVLVLPPHELNDVLFHIEGYVCHEYLVQCIFYWVTKGVRLNKKHRKLRSLKATDG-------DDVSVSEVGREKSTNESEEGIINVEEDRFEWGKKLAAKLNPKLMRIRFVYDYVIPTGLLEDINAADLLRDHMLSSTPVIQEI 464
            M P   N+Y     P+   Y PS   F +H+  +LL SPT A  +CDVVL T D H+VPACRALLA HS+YFR++FFSEF++S    I++ M   VL +VL FAYTG C LV   LD   F+    KH+EL+LLV+L+AAADY GF LLH WCDS+L  IC +F   +CTV+ AM+   A    RA L  +I    K +FNVP+ +   S                                           +F ++++  +   P + +P F PRT  +             GA L S     N  + TP S+  +  PV    +D  TYG+L L P  L++VL        HEYLVQCIFYWVT+G  L +K+ KL+ +K++          + +V++   + ST +S++ +I V++DRFEWGKK  ++L+ K MRIRFV+D+VIPTGL+E+++  D+L +++LS+T  I E+
Sbjct:    1 MAPSTDNMYALTDFPEKYSYNPSDDQFRSHLLSTLLHSPTTAHKICDVVLITSDHHKVPACRALLAVHSEYFRTLFFSEFKQSEPDAIQLTMRSSVLHHVLTFAYTGHCALVRDMLDSPHFSHFFRKHDELRLLVELAAAADYYGFVLLHRWCDSALHRICTRFHAAACTVVQAMSDNDASHPSRALLVKLIRSNCKTAFNVPQSVSDDS-------------------------------------------TFMSNAFMSFGQTPSTPQPVFVPRTDVF-------------GAPLQSRRSEKN--VITPFSSMPQTNPVQQVLSDPNTYGILELSPQVLDEVLSDSLASNTHEYLVQCIFYWVTRGSILRRKNCKLKPVKSSSTKREAACKSENTVNKKESKHSTCDSQQ-LILVDDDRFEWGKKFVSRLDLKAMRIRFVHDFVIPTGLVENVDLLDMLWNYVLSTTCAIAEL 417

The following BLAST results are available for this feature:

BLAST of Ggra6881.t1 vs. uniprot

BLAST of Ggra6881.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IRH5	2.260e-92	39.08	BTB domain-containing protein n=1 Tax=Gracilariops...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000210	BTB/POZ domain	SMART	SM00225	BTB_4	coord: 45..151 e-value: 1.4E-8 score: 44.5
IPR000210	BTB/POZ domain	PFAM	PF00651	BTB	coord: 41..110 e-value: 2.9E-13 score: 50.0
IPR000210	BTB/POZ domain	PROSITE	PS50097	BTB	coord: 45..112 score: 15.431817
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 19..191 e-value: 1.3E-18 score: 69.3
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 23..156
None	No IPR available	CDD	cd18186	BTB_POZ_ZBTB_KLHL-like	coord: 44..110 e-value: 3.23647E-16 score: 71.4309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:828120..829514 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6881.t1	Ggra6881.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000056_pilon 828120..829514 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra6881.t1 ID=Ggra6881.t1|Name=Ggra6881.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MDPPETNIYLSKQAPDSSPYVPSYKDFHAHITYSLLDSPTAGNLCDVVLE
TCDGHEVPACRALLASHSDYFRSIFFSEFQESTQKTIRVAMSKQVLRYVL
IFAYTGFCPLVESGLDCTDFTQIHAKHEELKLLVQLSAAADYCGFYLLHG
WCDSSLLSICNKFPVVSCTVLAAMNGEAAHRSLRAKLHDVIGIYYKNSFN
VPEGLGKRSYAETVELRSRRRKLNLPPFREELEEVEEEDSDMAYGYGAYP
RPSFPTSSYHRYPDGPVSYEPFTPRTPSYLRGFSRGGRGRGRGALHSSVY
HGNYEMATPISNYGKPVSHTEADSKTYGVLVLPPHELNDVLFHIEGYVCH
EYLVQCIFYWVTKGVRLNKKHRKLRSLKATDGDDVSVSEVGREKSTNESE
EGIINVEEDRFEWGKKLAAKLNPKLMRIRFVYDYVIPTGLLEDINAADLL
RDHMLSSTPVIQEI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000210	BTB/POZ_dom
IPR011333	SKP1/BTB/POZ_sf