Ggra6881.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6881.t1
Unique Name	Ggra6881.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:828120..829514 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9483.ENSCJAP00000009521
Preferred name	KLHL34
PFAMs	BACK,BTB,Kelch_1,Kelch_2
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10469
GOs	GO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0031461,GO:0031463,GO:0032991,GO:0044424,GO:0044464,GO:1902494,GO:1990234
Evalue	3.1e-08
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota,39TKD@33154\|Opisthokonta,3BD17@33208\|Metazoa,3CZY3@33213\|Bilateria,480IN@7711\|Chordata,492IX@7742\|Vertebrata,3J47N@40674\|Mammalia,35HTM@314146\|Euarchontoglires
Description	Kelch-like family member 34
COG category	T
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6881	Ggra6881	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 828120..829514 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6881.t1.start1	Ggra6881.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 828120..828122 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6881.t1.CDS1	Ggra6881.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 828120..829514 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6881.t1.exon1	Ggra6881.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 828120..829514 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6881.t1.stop1	Ggra6881.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 829512..829514 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6881.t1	Ggra6881.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 828120..829514 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:828120..829514+
coding sequence from alignment at tig00000056_pilon:828120..829514+

mRNA sequence

>Ggra6881.t1 ID=Ggra6881.t1|Name=Ggra6881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp
MDPPETNIYLSKQAPDSSPYVPSYKDFHAHITYSLLDSPTAGNLCDVVLE
TCDGHEVPACRALLASHSDYFRSIFFSEFQESTQKTIRVAMSKQVLRYVL
IFAYTGFCPLVESGLDCTDFTQIHAKHEELKLLVQLSAAADYCGFYLLHG
WCDSSLLSICNKFPVVSCTVLAAMNGEAAHRSLRAKLHDVIGIYYKNSFN
VPEGLGKRSYAETVELRSRRRKLNLPPFREELEEVEEEDSDMAYGYGAYP
RPSFPTSSYHRYPDGPVSYEPFTPRTPSYLRGFSRGGRGRGRGALHSSVY
HGNYEMATPISNYGKPVSHTEADSKTYGVLVLPPHELNDVLFHIEGYVCH
EYLVQCIFYWVTKGVRLNKKHRKLRSLKATDGDDVSVSEVGREKSTNESE
EGIINVEEDRFEWGKKLAAKLNPKLMRIRFVYDYVIPTGLLEDINAADLL
RDHMLSSTPVIQEI*

spliced messenger RNA

>Ggra6881.t1 ID=Ggra6881.t1|Name=Ggra6881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000056_pilon:828120..829514+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCGCCCGAAACCAACATATACTTATCCAAGCAAGCGCCCGACTC
GTCTCCGTACGTTCCAAGCTACAAAGATTTTCACGCACATATCACCTACT
CTCTTCTCGACTCTCCAACGGCGGGCAACCTTTGTGATGTAGTTCTTGAA
ACATGCGATGGTCATGAAGTACCAGCATGTCGAGCACTACTCGCATCACA
TAGTGATTATTTTCGCTCAATCTTTTTCTCGGAGTTCCAAGAATCTACGC
AGAAGACAATTAGAGTGGCAATGAGTAAGCAAGTTCTTCGTTACGTACTG
ATATTTGCTTATACCGGATTTTGCCCTCTTGTGGAGTCTGGCTTGGATTG
CACGGACTTTACACAAATACATGCAAAACATGAAGAACTCAAGCTTTTGG
TTCAGCTCAGTGCAGCCGCTGATTACTGCGGCTTCTATCTGCTGCATGGC
TGGTGCGACTCTTCCTTGCTTTCTATCTGTAACAAGTTTCCTGTTGTGTC
ATGCACCGTTCTAGCGGCAATGAATGGTGAAGCGGCACATCGTTCTTTAC
GCGCAAAGCTTCACGATGTTATTGGAATCTATTACAAGAATTCTTTCAAC
GTCCCAGAAGGCCTCGGGAAACGGTCCTATGCCGAAACTGTGGAGCTTCG
GTCTCGTCGTCGAAAACTTAATCTGCCTCCCTTTCGAGAGGAGCTCGAAG
AGGTTGAAGAAGAAGATTCTGATATGGCATATGGCTATGGAGCGTACCCA
AGACCCTCGTTTCCAACATCATCATACCACAGATATCCGGATGGACCGGT
TTCATATGAACCATTTACTCCACGTACCCCATCTTATCTAAGAGGCTTCA
GTCGAGGTGGCCGTGGTCGCGGAAGAGGAGCGTTGCATAGTTCGGTTTAT
CACGGAAATTATGAAATGGCTACACCGATTTCAAACTATGGTAAACCTGT
GTCTCACACTGAGGCTGATTCGAAGACGTATGGGGTGCTTGTTCTACCAC
CACATGAACTAAATGACGTGCTCTTTCATATCGAGGGGTATGTATGTCAC
GAGTATTTGGTGCAGTGTATCTTTTATTGGGTCACAAAGGGAGTTCGCCT
GAACAAAAAGCATCGTAAACTACGGTCATTGAAAGCAACCGATGGTGATG
ATGTGAGTGTCTCCGAGGTGGGTAGAGAAAAATCAACCAATGAATCCGAA
GAGGGTATCATTAATGTCGAAGAAGATCGTTTTGAGTGGGGGAAGAAGTT
AGCGGCCAAGCTGAACCCAAAGCTTATGCGCATTCGCTTTGTATATGACT
ACGTTATTCCCACAGGTTTGTTAGAGGATATCAACGCGGCCGATTTACTT
CGCGATCACATGCTCTCCTCAACTCCCGTTATACAAGAAATCTGA

protein sequence of Ggra6881.t1

>Ggra6881.t1 ID=Ggra6881.t1|Name=Ggra6881.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MDPPETNIYLSKQAPDSSPYVPSYKDFHAHITYSLLDSPTAGNLCDVVLE
TCDGHEVPACRALLASHSDYFRSIFFSEFQESTQKTIRVAMSKQVLRYVL
IFAYTGFCPLVESGLDCTDFTQIHAKHEELKLLVQLSAAADYCGFYLLHG
WCDSSLLSICNKFPVVSCTVLAAMNGEAAHRSLRAKLHDVIGIYYKNSFN
VPEGLGKRSYAETVELRSRRRKLNLPPFREELEEVEEEDSDMAYGYGAYP
RPSFPTSSYHRYPDGPVSYEPFTPRTPSYLRGFSRGGRGRGRGALHSSVY
HGNYEMATPISNYGKPVSHTEADSKTYGVLVLPPHELNDVLFHIEGYVCH
EYLVQCIFYWVTKGVRLNKKHRKLRSLKATDGDDVSVSEVGREKSTNESE
EGIINVEEDRFEWGKKLAAKLNPKLMRIRFVYDYVIPTGLLEDINAADLL
RDHMLSSTPVIQEI*

mRNA from alignment at tig00000056_pilon:828120..829514+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6881.t1 ID=Ggra6881.t1|Name=Ggra6881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000056_pilon:828120..829514+ (Gracilaria gracilis GNS1m male)
ATGGATCCGCCCGAAACCAACATATACTTATCCAAGCAAGCGCCCGACTC
GTCTCCGTACGTTCCAAGCTACAAAGATTTTCACGCACATATCACCTACT
CTCTTCTCGACTCTCCAACGGCGGGCAACCTTTGTGATGTAGTTCTTGAA
ACATGCGATGGTCATGAAGTACCAGCATGTCGAGCACTACTCGCATCACA
TAGTGATTATTTTCGCTCAATCTTTTTCTCGGAGTTCCAAGAATCTACGC
AGAAGACAATTAGAGTGGCAATGAGTAAGCAAGTTCTTCGTTACGTACTG
ATATTTGCTTATACCGGATTTTGCCCTCTTGTGGAGTCTGGCTTGGATTG
CACGGACTTTACACAAATACATGCAAAACATGAAGAACTCAAGCTTTTGG
TTCAGCTCAGTGCAGCCGCTGATTACTGCGGCTTCTATCTGCTGCATGGC
TGGTGCGACTCTTCCTTGCTTTCTATCTGTAACAAGTTTCCTGTTGTGTC
ATGCACCGTTCTAGCGGCAATGAATGGTGAAGCGGCACATCGTTCTTTAC
GCGCAAAGCTTCACGATGTTATTGGAATCTATTACAAGAATTCTTTCAAC
GTCCCAGAAGGCCTCGGGAAACGGTCCTATGCCGAAACTGTGGAGCTTCG
GTCTCGTCGTCGAAAACTTAATCTGCCTCCCTTTCGAGAGGAGCTCGAAG
AGGTTGAAGAAGAAGATTCTGATATGGCATATGGCTATGGAGCGTACCCA
AGACCCTCGTTTCCAACATCATCATACCACAGATATCCGGATGGACCGGT
TTCATATGAACCATTTACTCCACGTACCCCATCTTATCTAAGAGGCTTCA
GTCGAGGTGGCCGTGGTCGCGGAAGAGGAGCGTTGCATAGTTCGGTTTAT
CACGGAAATTATGAAATGGCTACACCGATTTCAAACTATGGTAAACCTGT
GTCTCACACTGAGGCTGATTCGAAGACGTATGGGGTGCTTGTTCTACCAC
CACATGAACTAAATGACGTGCTCTTTCATATCGAGGGGTATGTATGTCAC
GAGTATTTGGTGCAGTGTATCTTTTATTGGGTCACAAAGGGAGTTCGCCT
GAACAAAAAGCATCGTAAACTACGGTCATTGAAAGCAACCGATGGTGATG
ATGTGAGTGTCTCCGAGGTGGGTAGAGAAAAATCAACCAATGAATCCGAA
GAGGGTATCATTAATGTCGAAGAAGATCGTTTTGAGTGGGGGAAGAAGTT
AGCGGCCAAGCTGAACCCAAAGCTTATGCGCATTCGCTTTGTATATGACT
ACGTTATTCCCACAGGTTTGTTAGAGGATATCAACGCGGCCGATTTACTT
CGCGATCACATGCTCTCCTCAACTCCCGTTATACAAGAAATCTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:828120..829514+

>Ggra6881.t1 ID=Ggra6881.t1|Name=Ggra6881.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00000056_pilon:828120..829514+ (Gracilaria gracilis GNS1m male)
ATGGATCCGCCCGAAACCAACATATACTTATCCAAGCAAGCGCCCGACTC
GTCTCCGTACGTTCCAAGCTACAAAGATTTTCACGCACATATCACCTACT
CTCTTCTCGACTCTCCAACGGCGGGCAACCTTTGTGATGTAGTTCTTGAA
ACATGCGATGGTCATGAAGTACCAGCATGTCGAGCACTACTCGCATCACA
TAGTGATTATTTTCGCTCAATCTTTTTCTCGGAGTTCCAAGAATCTACGC
AGAAGACAATTAGAGTGGCAATGAGTAAGCAAGTTCTTCGTTACGTACTG
ATATTTGCTTATACCGGATTTTGCCCTCTTGTGGAGTCTGGCTTGGATTG
CACGGACTTTACACAAATACATGCAAAACATGAAGAACTCAAGCTTTTGG
TTCAGCTCAGTGCAGCCGCTGATTACTGCGGCTTCTATCTGCTGCATGGC
TGGTGCGACTCTTCCTTGCTTTCTATCTGTAACAAGTTTCCTGTTGTGTC
ATGCACCGTTCTAGCGGCAATGAATGGTGAAGCGGCACATCGTTCTTTAC
GCGCAAAGCTTCACGATGTTATTGGAATCTATTACAAGAATTCTTTCAAC
GTCCCAGAAGGCCTCGGGAAACGGTCCTATGCCGAAACTGTGGAGCTTCG
GTCTCGTCGTCGAAAACTTAATCTGCCTCCCTTTCGAGAGGAGCTCGAAG
AGGTTGAAGAAGAAGATTCTGATATGGCATATGGCTATGGAGCGTACCCA
AGACCCTCGTTTCCAACATCATCATACCACAGATATCCGGATGGACCGGT
TTCATATGAACCATTTACTCCACGTACCCCATCTTATCTAAGAGGCTTCA
GTCGAGGTGGCCGTGGTCGCGGAAGAGGAGCGTTGCATAGTTCGGTTTAT
CACGGAAATTATGAAATGGCTACACCGATTTCAAACTATGGTAAACCTGT
GTCTCACACTGAGGCTGATTCGAAGACGTATGGGGTGCTTGTTCTACCAC
CACATGAACTAAATGACGTGCTCTTTCATATCGAGGGGTATGTATGTCAC
GAGTATTTGGTGCAGTGTATCTTTTATTGGGTCACAAAGGGAGTTCGCCT
GAACAAAAAGCATCGTAAACTACGGTCATTGAAAGCAACCGATGGTGATG
ATGTGAGTGTCTCCGAGGTGGGTAGAGAAAAATCAACCAATGAATCCGAA
GAGGGTATCATTAATGTCGAAGAAGATCGTTTTGAGTGGGGGAAGAAGTT
AGCGGCCAAGCTGAACCCAAAGCTTATGCGCATTCGCTTTGTATATGACT
ACGTTATTCCCACAGGTTTGTTAGAGGATATCAACGCGGCCGATTTACTT
CGCGATCACATGCTCTCCTCAACTCCCGTTATACAAGAAATCTGA